data_IRF
#

_chem_comp.id                                   IRF
_chem_comp.name                                 "1-DEOXY-1-(8-IODO-7-METHYL-2,4-DIOXO-3,4-DIHYDROBENZO[G]PTERIDIN-10(2H)-YL)-D-RIBITOL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H17 I N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "8-IODO-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-08-01
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       488.234
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    IRF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IRF  N1      N1    N  0  1  Y  N  N  45.763  11.821  29.724  -5.999  -5.582  -3.312  N1      IRF   1  
IRF  C2      C2    C  0  1  Y  N  N  46.748  11.192  28.981  -6.921  -5.995  -4.250  C2      IRF   2  
IRF  O2      O2    O  0  1  N  N  N  47.141  11.777  27.941  -7.750  -6.870  -3.988  O2      IRF   3  
IRF  N3      N3    N  0  1  Y  N  N  47.278   9.978  29.301  -6.922  -5.414  -5.519  N3      IRF   4  
IRF  C4      C4    C  0  1  Y  N  N  46.846   9.328  30.386  -6.067  -4.431  -5.958  C4      IRF   5  
IRF  O4      O4    O  0  1  N  N  N  47.298   8.183  30.679  -6.043  -3.905  -7.058  O4      IRF   6  
IRF  C4A     C4A   C  0  1  Y  N  N  45.795   9.981  31.223  -5.094  -4.025  -4.900  C4A     IRF   7  
IRF  N5      N5    N  0  1  Y  N  N  45.256   9.360  32.258  -4.244  -3.103  -5.216  N5      IRF   8  
IRF  C5A     C5A   C  0  1  Y  N  N  44.292   9.906  33.044  -3.300  -2.674  -4.269  C5A     IRF   9  
IRF  C6      C6    C  0  1  Y  N  N  43.827   9.203  34.130  -2.399  -1.671  -4.659  C6      IRF  10  
IRF  C7      C7    C  0  1  Y  N  N  42.870   9.748  34.946  -1.436  -1.196  -3.774  C7      IRF  11  
IRF  C7M     C7M   C  0  1  N  N  N  42.333   8.947  36.129  -0.510  -0.129  -4.260  C7M     IRF  12  
IRF  C8      C8    C  0  1  Y  N  N  42.394  11.136  34.645  -1.366  -1.721  -2.491  C8      IRF  13  
IRF  C9      C9    C  0  1  Y  N  N  42.885  11.868  33.585  -2.258  -2.719  -2.092  C9      IRF  14  
IRF  C9A     C9A   C  0  1  Y  N  N  43.859  11.288  32.813  -3.241  -3.216  -2.969  C9A     IRF  15  
IRF  N10     N10   N  0  1  Y  N  N  44.294  11.923  31.626  -4.166  -4.224  -2.615  N10     IRF  16  
IRF  C10     C10   C  0  1  Y  N  N  45.328  11.326  30.887  -5.108  -4.662  -3.538  C10     IRF  17  
IRF  "C1'"   C1*   C  0  1  N  N  N  44.008  13.349  31.578  -4.098  -4.781  -1.264  "C1'"   IRF  18  
IRF  "C2'"   C2*   C  0  1  N  N  S  45.162  14.124  32.103  -3.152  -5.988  -1.242  "C2'"   IRF  19  
IRF  "O2'"   O2*   O  0  1  N  N  N  44.796  14.580  33.432  -3.637  -6.962  -2.167  "O2'"   IRF  20  
IRF  "C3'"   C3*   C  0  1  N  N  S  45.501  15.182  31.039  -3.039  -6.627   0.157  "C3'"   IRF  21  
IRF  "O3'"   O3*   O  0  1  N  N  N  46.859  15.624  31.040  -2.576  -5.654   1.093  "O3'"   IRF  22  
IRF  "C4'"   C4*   C  0  1  N  N  R  44.691  16.438  31.131  -2.086  -7.836   0.191  "C4'"   IRF  23  
IRF  "O4'"   O4*   O  0  1  N  N  N  43.646  16.194  30.171  -2.026  -8.345   1.525  "O4'"   IRF  24  
IRF  "C5'"   C5*   C  0  1  N  N  N  45.554  17.537  30.531  -0.670  -7.474  -0.253  "C5'"   IRF  25  
IRF  I8      I8    I  0  1  N  N  N  40.961  12.013  35.952   0.055  -1.057  -1.102  I8      IRF  26  
IRF  "O5'"   O5*   O  0  1  N  N  N  45.154  17.562  29.131   0.134  -8.649  -0.225  "O5'"   IRF  27  
IRF  H3      H3    H  0  1  N  N  N  48.003   9.566  28.714  -7.619  -5.749  -6.177  H3      IRF  28  
IRF  H6      H6    H  0  1  N  N  N  44.225   8.197  34.345  -2.457  -1.262  -5.666  H6      IRF  29  
IRF  H7M1    1H7M  H  0  0  N  N  N  41.555   9.390  36.793  -1.050   0.580  -4.898  H7M1    IRF  30  
IRF  H7M2    2H7M  H  0  0  N  N  N  43.195   8.628  36.760  -0.067   0.422  -3.421  H7M2    IRF  31  
IRF  H7M3    3H7M  H  0  0  N  N  N  41.959   7.967  35.751   0.320  -0.557  -4.836  H7M3    IRF  32  
IRF  H9      H9    H  0  1  N  N  N  42.509  12.882  33.366  -2.181  -3.112  -1.081  H9      IRF  33  
IRF  "H1'1"  1H1*  H  0  0  N  N  N  43.061  13.601  32.110  -5.108  -5.074  -0.960  "H1'1"  IRF  34  
IRF  "H1'2"  2H1*  H  0  0  N  N  N  43.716  13.680  30.554  -3.751  -3.994  -0.589  "H1'2"  IRF  35  
IRF  "H2'"   H2*   H  0  1  N  N  N  46.032  13.433  32.198  -2.162  -5.666  -1.585  "H2'"   IRF  36  
IRF  HA      HA    H  0  1  N  N  N  45.534  15.075  33.768  -3.356  -6.667  -3.046  HA      IRF  37  
IRF  "H3'"   H3*   H  0  1  N  N  N  45.299  14.728  30.041  -4.028  -6.970   0.488  "H3'"   IRF  38  
IRF  HB      HB    H  0  1  N  N  N  47.068  16.277  30.383  -1.812  -6.046   1.541  HB      IRF  39  
IRF  "H4'"   H4*   H  0  1  N  N  N  44.319  16.663  32.158  -2.476  -8.643  -0.441  "H4'"   IRF  40  
IRF  HC      HC    H  0  1  N  N  N  43.132  16.991  30.229  -1.823  -9.289   1.448  HC      IRF  41  
IRF  "H5'1"  1H5*  H  0  0  N  N  N  46.649  17.405  30.695  -0.658  -7.088  -1.278  "H5'1"  IRF  42  
IRF  "H5'2"  2H5*  H  0  0  N  N  N  45.475  18.520  31.051  -0.222  -6.739   0.423  "H5'2"  IRF  43  
IRF  "H5'"   H5*   H  0  1  N  N  N  45.693  18.249  28.756  -0.474  -9.399  -0.143  "H5'"   IRF  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IRF  N1     C2      SING  Y  N   1  
IRF  N1     C10     DOUB  Y  N   2  
IRF  C2     O2      DOUB  N  N   3  
IRF  C2     N3      SING  Y  N   4  
IRF  N3     C4      SING  Y  N   5  
IRF  N3     H3      SING  N  N   6  
IRF  C4     O4      DOUB  N  N   7  
IRF  C4     C4A     SING  Y  N   8  
IRF  C4A    N5      DOUB  Y  N   9  
IRF  C4A    C10     SING  Y  N  10  
IRF  N5     C5A     SING  Y  N  11  
IRF  C5A    C6      SING  Y  N  12  
IRF  C5A    C9A     DOUB  Y  N  13  
IRF  C6     C7      DOUB  Y  N  14  
IRF  C6     H6      SING  N  N  15  
IRF  C7     C7M     SING  N  N  16  
IRF  C7     C8      SING  Y  N  17  
IRF  C7M    H7M1    SING  N  N  18  
IRF  C7M    H7M2    SING  N  N  19  
IRF  C7M    H7M3    SING  N  N  20  
IRF  C8     C9      DOUB  Y  N  21  
IRF  C8     I8      SING  N  N  22  
IRF  C9     C9A     SING  Y  N  23  
IRF  C9     H9      SING  N  N  24  
IRF  C9A    N10     SING  Y  N  25  
IRF  N10    C10     SING  Y  N  26  
IRF  N10    "C1'"   SING  N  N  27  
IRF  "C1'"  "C2'"   SING  N  N  28  
IRF  "C1'"  "H1'1"  SING  N  N  29  
IRF  "C1'"  "H1'2"  SING  N  N  30  
IRF  "C2'"  "O2'"   SING  N  N  31  
IRF  "C2'"  "C3'"   SING  N  N  32  
IRF  "C2'"  "H2'"   SING  N  N  33  
IRF  "O2'"  HA      SING  N  N  34  
IRF  "C3'"  "O3'"   SING  N  N  35  
IRF  "C3'"  "C4'"   SING  N  N  36  
IRF  "C3'"  "H3'"   SING  N  N  37  
IRF  "O3'"  HB      SING  N  N  38  
IRF  "C4'"  "O4'"   SING  N  N  39  
IRF  "C4'"  "C5'"   SING  N  N  40  
IRF  "C4'"  "H4'"   SING  N  N  41  
IRF  "O4'"  HC      SING  N  N  42  
IRF  "C5'"  "O5'"   SING  N  N  43  
IRF  "C5'"  "H5'1"  SING  N  N  44  
IRF  "C5'"  "H5'2"  SING  N  N  45  
IRF  "O5'"  "H5'"   SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IRF  SMILES            ACDLabs               10.04  "Ic2cc1N(C3=NC(=O)NC(=O)C3=Nc1cc2C)CC(O)C(O)C(O)CO"  
IRF  SMILES_CANONICAL  CACTVS                3.341  "Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO)c2cc1I"  
IRF  SMILES            CACTVS                3.341  "Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO)c2cc1I"  
IRF  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1cc2c(cc1I)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO)O)O)O"  
IRF  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1cc2c(cc1I)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(CO)O)O)O"  
IRF  InChI             InChI                 1.03   "InChI=1S/C16H17IN4O6/c1-6-2-8-9(3-7(6)17)21(4-10(23)13(25)11(24)5-22)14-12(18-8)15(26)20-16(27)19-14/h2-3,10-11,13,22-25H,4-5H2,1H3,(H,20,26,27)/t10-,11+,13-/m0/s1"  
IRF  InChIKey          InChI                 1.03   GXUZMSUHTJJUNU-LOWVWBTDSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IRF  "SYSTEMATIC NAME"  ACDLabs               10.04  "1-deoxy-1-(8-iodo-7-methyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-D-ribitol"  
IRF  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "8-iodo-7-methyl-10-[(2S,3S,4R)-2,3,4,5-tetrahydroxypentyl]benzo[g]pteridine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IRF  "Create component"      2006-08-01  EBI   
IRF  "Modify aromatic_flag"  2011-06-04  RCSB  
IRF  "Modify descriptor"     2011-06-04  RCSB  
IRF  "Modify synonyms"       2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     IRF
_pdbx_chem_comp_synonyms.name        "8-IODO-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
