data_IVF
# 
_chem_comp.id                                    IVF 
_chem_comp.name                                  "N-(iodoacetyl)-L-valyl-L-phenylalaninamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H22 I N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         iodoacetyl-valyl-phenylalanyl-amide 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-05-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        431.269 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IVF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1QA7 
_chem_comp.pdbx_subcomponent_list                "04E VAL PHE NH2" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IVF C1  C1  C 0 1 N N N N N N 0.611  -3.233 22.249 2.004  0.369  -0.131 C1   04E 1  
IVF O1  O1  O 0 1 N N N N N N 0.312  -2.156 22.745 2.133  -0.197 0.934  O1   04E 2  
IVF CH3 CH3 C 0 1 N N N N N N 1.967  -3.397 21.593 3.164  0.446  -1.089 CH3  04E 3  
IVF I1  I1  I 0 1 N Y N N N N ?      ?      ?      4.877  -0.556 -0.229 I1   04E 4  
IVF N2  N2  N 0 1 N N N N N N -0.227 -4.281 22.244 0.821  0.924  -0.460 N    VAL 5  
IVF CA2 CA2 C 0 1 N N S N N N -1.643 -4.233 22.664 -0.309 0.845  0.469  CA   VAL 6  
IVF C2  C2  C 0 1 N N N N N N -1.912 -4.677 24.103 -1.600 0.955  -0.300 C    VAL 7  
IVF O2  O2  O 0 1 N N N N N N -1.717 -5.860 24.383 -1.584 1.266  -1.472 O    VAL 8  
IVF CB2 CB2 C 0 1 N N N N N N -2.516 -5.131 21.741 -0.220 1.989  1.481  CB   VAL 9  
IVF CG1 CG1 C 0 1 N N N N N N -4.000 -4.860 22.007 1.014  1.793  2.364  CG1  VAL 10 
IVF CG2 CG2 C 0 1 N N N N N N -2.151 -4.950 20.245 -0.107 3.321  0.736  CG2  VAL 11 
IVF N   N   N 0 1 N N N N N N -2.451 -3.777 24.955 -2.774 0.706  0.314  N    PHE 12 
IVF CA  CA  C 0 1 N N S N N N -2.705 -4.024 26.402 -4.020 0.712  -0.456 CA   PHE 13 
IVF C   C   C 0 1 N N N N N N -3.104 -5.446 26.745 -4.539 2.123  -0.562 C    PHE 14 
IVF O   O   O 0 1 N N N N N N -4.032 -5.959 26.100 -3.928 3.034  -0.044 O    PHE 15 
IVF CB  CB  C 0 1 N N N N N N -3.769 -3.080 26.993 -5.059 -0.163 0.248  CB   PHE 16 
IVF CG  CG  C 0 1 Y N N N N N -3.380 -1.617 27.002 -4.595 -1.596 0.245  CG   PHE 17 
IVF CD1 CD1 C 0 1 Y N N N N N -2.144 -1.204 27.468 -3.824 -2.076 1.288  CD1  PHE 18 
IVF CD2 CD2 C 0 1 Y N N N N N -4.301 -0.642 26.618 -4.944 -2.434 -0.798 CD2  PHE 19 
IVF CE1 CE1 C 0 1 Y N N N N N -1.797 0.139  27.460 -3.398 -3.390 1.284  CE1  PHE 20 
IVF CE2 CE2 C 0 1 Y N N N N N -3.969 0.702  26.649 -4.518 -3.749 -0.801 CE2  PHE 21 
IVF CZ  CZ  C 0 1 Y N N N N N -2.723 1.091  27.083 -3.742 -4.226 0.238  CZ   PHE 22 
IVF NXT NXT N 0 1 N N N N N N -2.329 -6.181 27.718 -5.682 2.372  -1.231 N    NH2 23 
IVF H1  H1  H 0 1 N N N N N N 2.672  -2.667 22.018 2.894  -0.039 -2.027 H1   04E 24 
IVF H2  H2  H 0 1 N N N N N N 2.342  -4.416 21.773 3.412  1.490  -1.278 H2   04E 25 
IVF H4  H4  H 0 1 N N N N N N 0.134  -5.160 21.933 0.717  1.377  -1.311 H    VAL 26 
IVF H5  H5  H 0 1 N N N N N N -2.003 -3.199 22.557 -0.280 -0.109 0.996  HA   VAL 27 
IVF H6  H6  H 0 1 N N N N N N -2.312 -6.178 22.009 -1.115 1.995  2.103  HB   VAL 28 
IVF H7  H7  H 0 1 N N N N N N -4.213 -5.000 23.077 1.907  1.759  1.740  HG11 VAL 29 
IVF H8  H8  H 0 1 N N N N N N -4.242 -3.827 21.717 1.094  2.623  3.067  HG12 VAL 30 
IVF H9  H9  H 0 1 N N N N N N -4.612 -5.559 21.417 0.921  0.858  2.916  HG13 VAL 31 
IVF H10 H10 H 0 1 N N N N N N -1.080 -5.154 20.101 0.788  3.315  0.114  HG21 VAL 32 
IVF H11 H11 H 0 1 N N N N N N -2.742 -5.650 19.636 -0.986 3.460  0.106  HG22 VAL 33 
IVF H12 H12 H 0 1 N N N N N N -2.372 -3.918 19.936 -0.043 4.136  1.457  HG23 VAL 34 
IVF H13 H13 H 0 1 N N N N N N -2.697 -2.880 24.587 -2.794 0.524  1.267  H    PHE 35 
IVF H14 H14 H 0 1 N N N N N N -1.767 -3.816 26.938 -3.831 0.318  -1.455 HA   PHE 36 
IVF H15 H15 H 0 1 N N N N N N -4.689 -3.186 26.400 -5.183 0.177  1.277  HB2  PHE 37 
IVF H16 H16 H 0 1 N N N N N N -3.964 -3.389 28.030 -6.012 -0.088 -0.276 HB3  PHE 38 
IVF H17 H17 H 0 1 N N N N N N -1.442 -1.935 27.842 -3.555 -1.423 2.105  HD1  PHE 39 
IVF H18 H18 H 0 1 N N N N N N -5.287 -0.940 26.292 -5.550 -2.060 -1.610 HD2  PHE 40 
IVF H19 H19 H 0 1 N N N N N N -0.801 0.440  27.749 -2.795 -3.765 2.099  HE1  PHE 41 
IVF H20 H20 H 0 1 N N N N N N -4.687 1.444  26.333 -4.792 -4.403 -1.615 HE2  PHE 42 
IVF H21 H21 H 0 1 N N N N N N -2.469 2.140  27.129 -3.409 -5.253 0.236  HZ   PHE 43 
IVF H22 H22 H 0 1 N N N N N N -2.532 -7.144 27.895 -6.170 1.643  -1.645 HN1  NH2 44 
IVF H23 H23 H 0 1 N N N N N N -1.590 -5.727 28.215 -6.016 3.280  -1.299 HN2  NH2 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IVF CG2 CB2 SING N N 1  
IVF CH3 C1  SING N N 2  
IVF CB2 CG1 SING N N 3  
IVF CB2 CA2 SING N N 4  
IVF N2  C1  SING N N 5  
IVF N2  CA2 SING N N 6  
IVF C1  O1  DOUB N N 7  
IVF CA2 C2  SING N N 8  
IVF C2  O2  DOUB N N 9  
IVF C2  N   SING N N 10 
IVF N   CA  SING N N 11 
IVF O   C   DOUB N N 12 
IVF CA  C   SING N N 13 
IVF CA  CB  SING N N 14 
IVF CD2 CE2 DOUB Y N 15 
IVF CD2 CG  SING Y N 16 
IVF CE2 CZ  SING Y N 17 
IVF C   NXT SING N N 18 
IVF CB  CG  SING N N 19 
IVF CG  CD1 DOUB Y N 20 
IVF CZ  CE1 DOUB Y N 21 
IVF CE1 CD1 SING Y N 22 
IVF CH3 H1  SING N N 23 
IVF CH3 H2  SING N N 24 
IVF N2  H4  SING N N 25 
IVF CA2 H5  SING N N 26 
IVF CB2 H6  SING N N 27 
IVF CG1 H7  SING N N 28 
IVF CG1 H8  SING N N 29 
IVF CG1 H9  SING N N 30 
IVF CG2 H10 SING N N 31 
IVF CG2 H11 SING N N 32 
IVF CG2 H12 SING N N 33 
IVF N   H13 SING N N 34 
IVF CA  H14 SING N N 35 
IVF CB  H15 SING N N 36 
IVF CB  H16 SING N N 37 
IVF CD1 H17 SING N N 38 
IVF CD2 H18 SING N N 39 
IVF CE1 H19 SING N N 40 
IVF CE2 H20 SING N N 41 
IVF CZ  H21 SING N N 42 
IVF NXT H22 SING N N 43 
IVF NXT H23 SING N N 44 
IVF CH3 I1  SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IVF SMILES           ACDLabs              12.01 "ICC(=O)NC(C(=O)NC(C(=O)N)Cc1ccccc1)C(C)C"                                                                                                                    
IVF InChI            InChI                1.03  "InChI=1S/C16H22IN3O3/c1-10(2)14(20-13(21)9-17)16(23)19-12(15(18)22)8-11-6-4-3-5-7-11/h3-7,10,12,14H,8-9H2,1-2H3,(H2,18,22)(H,19,23)(H,20,21)/t12-,14-/m0/s1" 
IVF InChIKey         InChI                1.03  IBXSBHDYMGMZJA-JSGCOSHPSA-N                                                                                                                                   
IVF SMILES_CANONICAL CACTVS               3.370 "CC(C)[C@H](NC(=O)CI)C(=O)N[C@@H](Cc1ccccc1)C(N)=O"                                                                                                           
IVF SMILES           CACTVS               3.370 "CC(C)[CH](NC(=O)CI)C(=O)N[CH](Cc1ccccc1)C(N)=O"                                                                                                              
IVF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)[C@@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N)NC(=O)CI"                                                                                                          
IVF SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)C(C(=O)NC(Cc1ccccc1)C(=O)N)NC(=O)CI"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
IVF "SYSTEMATIC NAME" ACDLabs              12.01 "N-(iodoacetyl)-L-valyl-L-phenylalaninamide"                                                                 
IVF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-N-[(2S)-1-azanyl-1-oxidanylidene-3-phenyl-propan-2-yl]-2-(2-iodanylethanoylamino)-3-methyl-butanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IVF "Create component" 2012-05-07 RCSB 
IVF "Modify synonyms"  2021-03-01 PDBE 
IVF "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      IVF 
_pdbx_chem_comp_synonyms.name         iodoacetyl-valyl-phenylalanyl-amide 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            IVF 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CH3 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
