data_JDF
#

_chem_comp.id                                   JDF
_chem_comp.name                                 steviol-19-o-glucoside
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H40 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-21
_chem_comp.pdbx_modified_date                   2021-12-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       480.591
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JDF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ES1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JDF  C1   C1   C  0  1  N  N  S  13.140   0.733  30.139   3.283  -0.431   0.455  C1   JDF   1  
JDF  C2   C2   C  0  1  N  N  R  13.279   2.226  29.868   4.716  -0.940   0.278  C2   JDF   2  
JDF  C3   C3   C  0  1  N  N  S  14.679   2.551  29.361   5.696   0.162   0.692  C3   JDF   3  
JDF  O3   O1   O  0  1  N  N  N  14.836   3.962  29.186   7.036  -0.278   0.461  O3   JDF   4  
JDF  C4   C4   C  0  1  N  N  S  15.720   2.011  30.321   5.418   1.417  -0.141  C4   JDF   5  
JDF  C5   C5   C  0  1  N  N  R  15.527   0.508  30.456   3.958   1.835   0.052  C5   JDF   6  
JDF  C6   C6   C  0  1  N  N  N  16.494  -0.129  31.429   3.656   3.052  -0.824  C6   JDF   7  
JDF  CAH  C7   C  0  1  N  N  S  10.213  -2.318  32.444  -1.400  -1.770   0.040  CAH  JDF   8  
JDF  CAI  C8   C  0  1  N  N  N  10.339  -3.626  31.664  -1.615  -1.321   1.484  CAI  JDF   9  
JDF  CAJ  C9   C  0  1  N  N  N   9.940  -4.805  32.535  -3.125  -1.360   1.767  CAJ  JDF  10  
JDF  CAK  C10  C  0  1  N  N  R  10.807  -4.955  33.775  -3.857  -0.440   0.811  CAK  JDF  11  
JDF  CAN  C11  C  0  1  N  N  N  12.200  -5.534  33.451  -3.711   1.026   1.260  CAN  JDF  12  
JDF  CAL  C12  C  0  1  N  N  N  10.253  -6.062  34.721  -5.390  -0.657   0.913  CAL  JDF  13  
JDF  CAM  C13  C  0  1  N  N  N  11.465  -6.675  35.392  -6.007   0.691   0.584  CAM  JDF  14  
JDF  CAA  C14  C  0  1  N  N  N  11.486  -7.645  36.290  -7.283   0.952   0.446  CAA  JDF  15  
JDF  CAO  C15  C  0  1  N  N  S  12.695  -5.962  34.839  -4.862   1.684   0.452  CAO  JDF  16  
JDF  OAW  O2   O  0  1  N  N  N  13.829  -6.823  34.748  -5.212   2.977   0.952  OAW  JDF  17  
JDF  CAP  C16  C  0  1  N  N  N  13.009  -4.703  35.661  -4.398   1.727  -1.007  CAP  JDF  18  
JDF  CAQ  C17  C  0  1  N  N  N  11.797  -3.765  35.794  -4.200   0.329  -1.571  CAQ  JDF  19  
JDF  CAR  C18  C  0  1  N  N  R  10.903  -3.607  34.537  -3.483  -0.636  -0.645  CAR  JDF  20  
JDF  CAS  C19  C  0  1  N  N  S  11.174  -2.315  33.674  -1.986  -0.740  -0.919  CAS  JDF  21  
JDF  CAT  C20  C  0  1  N  N  N  12.655  -2.169  33.280  -1.323   0.627  -0.792  CAT  JDF  22  
JDF  CAU  C21  C  0  1  N  N  N  10.774  -1.097  34.531  -1.793  -1.236  -2.361  CAU  JDF  23  
JDF  CAV  C22  C  0  1  N  N  N  10.764   0.223  33.773  -0.309  -1.471  -2.632  CAV  JDF  24  
JDF  CAF  C23  C  0  1  N  N  N   9.851   0.172  32.566   0.219  -2.566  -1.714  CAF  JDF  25  
JDF  CAE  C24  C  0  1  N  N  R  10.158  -0.990  31.604   0.017  -2.211  -0.241  CAE  JDF  26  
JDF  CAG  C25  C  0  1  N  N  N   9.007  -1.060  30.578   0.291  -3.508   0.558  CAG  JDF  27  
JDF  CAC  C26  C  0  1  N  N  N  11.410  -0.756  30.744   1.043  -1.202   0.194  CAC  JDF  28  
JDF  OAD  O3   O  0  1  N  N  N  11.900  -1.616  30.071   0.692  -0.166   0.709  OAD  JDF  29  
JDF  O1   O4   O  0  1  N  N  N  11.894   0.499  30.794   2.349  -1.450   0.010  O1   JDF  30  
JDF  O5   O5   O  0  1  N  N  N  14.194   0.257  30.963   3.101   0.754  -0.322  O5   JDF  31  
JDF  O6   O6   O  0  1  N  N  N  16.366  -1.552  31.440   2.329   3.513  -0.558  O6   JDF  32  
JDF  O4   O7   O  0  1  N  N  N  17.033   2.305  29.859   6.278   2.475   0.287  O4   JDF  33  
JDF  O2   O8   O  0  1  N  N  N  12.316   2.627  28.899   4.918  -2.093   1.098  O2   JDF  34  
JDF  H1   H1   H  0  1  N  N  N  13.155   0.204  29.175   3.104  -0.207   1.506  H1   JDF  35  
JDF  H2   H2   H  0  1  N  N  N  13.112   2.770  30.809   4.884  -1.203  -0.767  H2   JDF  36  
JDF  H3   H3   H  0  1  N  N  N  14.815   2.049  28.392   5.563   0.390   1.750  H3   JDF  37  
JDF  H4   H4   H  0  1  N  N  N  15.713   4.147  28.870   7.279  -1.074   0.953  H4   JDF  38  
JDF  H5   H5   H  0  1  N  N  N  15.560   2.473  31.306   5.599   1.202  -1.194  H5   JDF  39  
JDF  H6   H6   H  0  1  N  N  N  15.649   0.040  29.468   3.787   2.088   1.098  H6   JDF  40  
JDF  H7   H7   H  0  1  N  N  N  17.521   0.135  31.137   4.368   3.846  -0.601  H7   JDF  41  
JDF  H8   H8   H  0  1  N  N  N  16.290   0.256  32.439   3.739   2.774  -1.875  H8   JDF  42  
JDF  H9   H9   H  0  1  N  N  N   9.213  -2.376  32.898  -2.038  -2.685  -0.081  H9   JDF  43  
JDF  H10  H10  H  0  1  N  N  N   9.681  -3.587  30.783  -1.112  -1.996   2.174  H10  JDF  44  
JDF  H11  H11  H  0  1  N  N  N  11.382  -3.754  31.337  -1.247  -0.314   1.640  H11  JDF  45  
JDF  H12  H12  H  0  1  N  N  N   8.896  -4.667  32.853  -3.488  -2.381   1.644  H12  JDF  46  
JDF  H13  H13  H  0  1  N  N  N  10.023  -5.725  31.937  -3.308  -1.028   2.790  H13  JDF  47  
JDF  H14  H14  H  0  1  N  N  N  12.127  -6.394  32.769  -3.915   1.110   2.340  H14  JDF  48  
JDF  H15  H15  H  0  1  N  N  N  12.858  -4.771  33.009  -2.755   1.475   1.045  H15  JDF  49  
JDF  H16  H16  H  0  1  N  N  N   9.580  -5.623  35.472  -5.700  -1.405   0.190  H16  JDF  50  
JDF  H17  H17  H  0  1  N  N  N   9.709  -6.823  34.143  -5.641  -0.965   1.924  H17  JDF  51  
JDF  H18  H18  H  0  1  N  N  N  12.428  -7.990  36.690  -8.012   0.165   0.567  H18  JDF  52  
JDF  H19  H19  H  0  1  N  N  N  10.561  -8.092  36.624  -7.606   1.956   0.210  H19  JDF  53  
JDF  H20  H20  H  0  1  N  N  N  14.111  -7.070  35.621  -5.928   3.407   0.464  H20  JDF  54  
JDF  H21  H21  H  0  1  N  N  N  13.329  -5.010  36.668  -5.158   2.243  -1.605  H21  JDF  55  
JDF  H22  H22  H  0  1  N  N  N  13.826  -4.155  35.168  -3.473   2.297  -1.083  H22  JDF  56  
JDF  H23  H23  H  0  1  N  N  N  12.174  -2.767  36.063  -5.187  -0.089  -1.811  H23  JDF  57  
JDF  H24  H24  H  0  1  N  N  N  11.165  -4.150  36.608  -3.650   0.399  -2.513  H24  JDF  58  
JDF  H25  H25  H  0  1  N  N  N   9.892  -3.451  34.941  -3.887  -1.646  -0.919  H25  JDF  59  
JDF  H26  H26  H  0  1  N  N  N  13.278  -2.174  34.186  -0.288   0.562  -1.129  H26  JDF  60  
JDF  H27  H27  H  0  1  N  N  N  12.946  -3.008  32.631  -1.860   1.350  -1.406  H27  JDF  61  
JDF  H28  H28  H  0  1  N  N  N  12.799  -1.221  32.741  -1.346   0.948   0.250  H28  JDF  62  
JDF  H29  H29  H  0  1  N  N  N   9.764  -1.273  34.931  -2.343  -2.164  -2.493  H29  JDF  63  
JDF  H30  H30  H  0  1  N  N  N  11.488  -1.011  35.363  -2.168  -0.484  -3.054  H30  JDF  64  
JDF  H31  H31  H  0  1  N  N  N  11.787   0.448  33.436  -0.194  -1.802  -3.675  H31  JDF  65  
JDF  H32  H32  H  0  1  N  N  N  10.417   1.019  34.448   0.266  -0.558  -2.510  H32  JDF  66  
JDF  H33  H33  H  0  1  N  N  N   9.954   1.117  32.013  -0.312  -3.500  -1.927  H33  JDF  67  
JDF  H34  H34  H  0  1  N  N  N   8.815   0.065  32.919   1.282  -2.723  -1.909  H34  JDF  68  
JDF  H35  H35  H  0  1  N  N  N   8.056  -1.228  31.104  -0.410  -4.282   0.245  H35  JDF  69  
JDF  H36  H36  H  0  1  N  N  N   8.955  -0.113  30.020   1.311  -3.843   0.368  H36  JDF  70  
JDF  H37  H37  H  0  1  N  N  N   9.190  -1.889  29.878   0.165  -3.313   1.623  H37  JDF  71  
JDF  H38  H38  H  0  1  N  N  N  16.985  -1.921  32.059   2.069   4.285  -1.079  H38  JDF  72  
JDF  H39  H39  H  0  1  N  N  N  17.670   1.959  30.473   7.220   2.276   0.197  H39  JDF  73  
JDF  H40  H40  H  0  1  N  N  N  11.444   2.424  29.216   4.327  -2.830   0.893  H40  JDF  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JDF  O2   C2   SING  N  N   1  
JDF  O3   C3   SING  N  N   2  
JDF  C3   C2   SING  N  N   3  
JDF  C3   C4   SING  N  N   4  
JDF  O4   C4   SING  N  N   5  
JDF  C2   C1   SING  N  N   6  
JDF  OAD  CAC  DOUB  N  N   7  
JDF  C1   O1   SING  N  N   8  
JDF  C1   O5   SING  N  N   9  
JDF  C4   C5   SING  N  N  10  
JDF  C5   O5   SING  N  N  11  
JDF  C5   C6   SING  N  N  12  
JDF  CAG  CAE  SING  N  N  13  
JDF  CAC  O1   SING  N  N  14  
JDF  CAC  CAE  SING  N  N  15  
JDF  C6   O6   SING  N  N  16  
JDF  CAE  CAH  SING  N  N  17  
JDF  CAE  CAF  SING  N  N  18  
JDF  CAI  CAH  SING  N  N  19  
JDF  CAI  CAJ  SING  N  N  20  
JDF  CAH  CAS  SING  N  N  21  
JDF  CAJ  CAK  SING  N  N  22  
JDF  CAF  CAV  SING  N  N  23  
JDF  CAT  CAS  SING  N  N  24  
JDF  CAN  CAK  SING  N  N  25  
JDF  CAN  CAO  SING  N  N  26  
JDF  CAS  CAU  SING  N  N  27  
JDF  CAS  CAR  SING  N  N  28  
JDF  CAV  CAU  SING  N  N  29  
JDF  CAK  CAR  SING  N  N  30  
JDF  CAK  CAL  SING  N  N  31  
JDF  CAR  CAQ  SING  N  N  32  
JDF  CAL  CAM  SING  N  N  33  
JDF  OAW  CAO  SING  N  N  34  
JDF  CAO  CAM  SING  N  N  35  
JDF  CAO  CAP  SING  N  N  36  
JDF  CAM  CAA  DOUB  N  N  37  
JDF  CAP  CAQ  SING  N  N  38  
JDF  C1   H1   SING  N  N  39  
JDF  C2   H2   SING  N  N  40  
JDF  C3   H3   SING  N  N  41  
JDF  O3   H4   SING  N  N  42  
JDF  C4   H5   SING  N  N  43  
JDF  C5   H6   SING  N  N  44  
JDF  C6   H7   SING  N  N  45  
JDF  C6   H8   SING  N  N  46  
JDF  CAH  H9   SING  N  N  47  
JDF  CAI  H10  SING  N  N  48  
JDF  CAI  H11  SING  N  N  49  
JDF  CAJ  H12  SING  N  N  50  
JDF  CAJ  H13  SING  N  N  51  
JDF  CAN  H14  SING  N  N  52  
JDF  CAN  H15  SING  N  N  53  
JDF  CAL  H16  SING  N  N  54  
JDF  CAL  H17  SING  N  N  55  
JDF  CAA  H18  SING  N  N  56  
JDF  CAA  H19  SING  N  N  57  
JDF  OAW  H20  SING  N  N  58  
JDF  CAP  H21  SING  N  N  59  
JDF  CAP  H22  SING  N  N  60  
JDF  CAQ  H23  SING  N  N  61  
JDF  CAQ  H24  SING  N  N  62  
JDF  CAR  H25  SING  N  N  63  
JDF  CAT  H26  SING  N  N  64  
JDF  CAT  H27  SING  N  N  65  
JDF  CAT  H28  SING  N  N  66  
JDF  CAU  H29  SING  N  N  67  
JDF  CAU  H30  SING  N  N  68  
JDF  CAV  H31  SING  N  N  69  
JDF  CAV  H32  SING  N  N  70  
JDF  CAF  H33  SING  N  N  71  
JDF  CAF  H34  SING  N  N  72  
JDF  CAG  H35  SING  N  N  73  
JDF  CAG  H36  SING  N  N  74  
JDF  CAG  H37  SING  N  N  75  
JDF  O6   H38  SING  N  N  76  
JDF  O4   H39  SING  N  N  77  
JDF  O2   H40  SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JDF  InChI             InChI                 1.03   "InChI=1S/C26H40O8/c1-14-11-25-9-5-16-23(2,17(25)6-10-26(14,32)13-25)7-4-8-24(16,3)22(31)34-21-20(30)19(29)18(28)15(12-27)33-21/h15-21,27-30,32H,1,4-13H2,2-3H3/t15-,16+,17+,18-,19+,20-,21+,23-,24-,25-,26+/m1/s1"  
JDF  InChIKey          InChI                 1.03   OQPOFZJZPYRNFF-CULFPKEHSA-N  
JDF  SMILES_CANONICAL  CACTVS                3.385  "C[C@@]12CCC[C@](C)([C@H]1CC[C@]34CC(=C)[C@](O)(CC[C@@H]23)C4)C(=O)O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5O"  
JDF  SMILES            CACTVS                3.385  "C[C]12CCC[C](C)([CH]1CC[C]34CC(=C)[C](O)(CC[CH]23)C4)C(=O)O[CH]5O[CH](CO)[CH](O)[CH](O)[CH]5O"  
JDF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@]12CCC[C@@]([C@H]1CC[C@]34[C@H]2CC[C@](C3)(C(=C)C4)O)(C)C(=O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O"  
JDF  SMILES            "OpenEye OEToolkits"  2.0.7  "CC12CCCC(C1CCC34C2CCC(C3)(C(=C)C4)O)(C)C(=O)OC5C(C(C(C(O5)CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JDF  "Create component"  2021-05-21  PDBJ  
JDF  "Initial release"   2021-12-08  RCSB  
##
