data_MMF
# 
_chem_comp.id                                    MMF 
_chem_comp.name                                  dTDP-3-N-methylamino-3,6-dideoxygalactose 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H29 N3 O14 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-02-17 
_chem_comp.pdbx_modified_date                    2014-02-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        561.371 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MMF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4OQE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MMF O2B   O2B   O 0 1 N N N 7.225  10.220 12.178 4.036  2.927  0.552  O2B   MMF 1  
MMF PB    PB    P 0 1 N N N 7.272  11.633 12.638 3.099  1.633  0.755  PB    MMF 2  
MMF O1B   O1B   O 0 1 N N N 6.760  12.847 11.917 2.910  1.383  2.201  O1B   MMF 3  
MMF O3B   O3B   O 0 1 N N N 8.855  11.823 12.582 3.798  0.352  0.075  O3B   MMF 4  
MMF C1Q   C1Q   C 0 1 N N R 9.477  12.924 13.194 5.033  -0.198 0.539  C1Q   MMF 5  
MMF O5Q   O5Q   O 0 1 N N N 10.629 12.418 13.844 4.768  -1.194 1.530  O5Q   MMF 6  
MMF C5Q   C5Q   C 0 1 N N R 11.489 11.722 12.947 3.949  -2.271 1.071  C5Q   MMF 7  
MMF C6Q   C6Q   C 0 1 N N N 12.711 11.280 13.757 3.711  -3.255 2.217  C6Q   MMF 8  
MMF C4Q   C4Q   C 0 1 N N R 11.898 12.620 11.784 4.654  -2.990 -0.082 C4Q   MMF 9  
MMF O4Q   O4Q   O 0 1 N N N 12.766 13.643 12.296 5.883  -3.551 0.385  O4Q   MMF 10 
MMF C3Q   C3Q   C 0 1 N N S 10.717 13.281 11.079 4.943  -1.985 -1.201 C3Q   MMF 11 
MMF N3Q   N3Q   N 0 1 N N N 11.190 14.270 10.135 5.687  -2.650 -2.280 N3Q   MMF 12 
MMF C2M   C2M   C 0 1 N N N 12.279 13.951 9.223  5.479  -1.965 -3.562 C2M   MMF 13 
MMF C2Q   C2Q   C 0 1 N N R 9.844  13.939 12.119 5.781  -0.835 -0.635 C2Q   MMF 14 
MMF O2Q   O2Q   O 0 1 N N N 8.670  14.536 11.541 5.996  0.146  -1.652 O2Q   MMF 15 
MMF O3A   O3A   O 0 1 N N N 6.898  11.756 14.221 1.668  1.893  0.064  O3A   MMF 16 
MMF PA    PA    P 0 1 N N N 6.027  10.703 15.121 0.380  2.776  0.457  PA    MMF 17 
MMF O2A   O2A   O 0 1 N N N 6.849  9.572  15.613 0.644  4.315  0.063  O2A   MMF 18 
MMF O1A   O1A   O 0 1 N N N 4.734  10.446 14.350 0.138  2.674  1.913  O1A   MMF 19 
MMF "O5'" "O5'" O 0 1 N N N 5.648  11.673 16.323 -0.907 2.231  -0.342 "O5'" MMF 20 
MMF "C5'" "C5'" C 0 1 N N N 4.928  12.895 16.080 -2.226 2.739  -0.130 "C5'" MMF 21 
MMF "C4'" "C4'" C 0 1 N N R 5.722  14.109 16.549 -3.208 2.005  -1.046 "C4'" MMF 22 
MMF "O4'" "O4'" O 0 1 N N N 4.959  15.297 16.353 -3.367 0.635  -0.618 "O4'" MMF 23 
MMF "C1'" "C1'" C 0 1 N N R 4.705  15.937 17.598 -4.620 0.201  -1.189 "C1'" MMF 24 
MMF "C2'" "C2'" C 0 1 N N N 4.916  14.886 18.639 -5.569 1.408  -1.023 "C2'" MMF 25 
MMF "C3'" "C3'" C 0 1 N N S 5.994  14.050 18.023 -4.619 2.623  -0.926 "C3'" MMF 26 
MMF "O3'" "O3'" O 0 1 N N N 7.230  14.669 18.268 -4.860 3.533  -2.001 "O3'" MMF 27 
MMF N1    N1    N 0 1 N N N 3.350  16.538 17.582 -5.139 -0.959 -0.460 N1    MMF 28 
MMF C2    C2    C 0 1 N N N 3.163  17.780 18.087 -5.287 -0.895 0.876  C2    MMF 29 
MMF O2    O2    O 0 1 N N N 4.193  18.470 18.646 -4.989 0.127  1.463  O2    MMF 30 
MMF N3    N3    N 0 1 N N N 1.958  18.366 18.062 -5.761 -1.946 1.570  N3    MMF 31 
MMF C4    C4    C 0 1 N N N 0.898  17.733 17.547 -6.096 -3.086 0.933  C4    MMF 32 
MMF O4    O4    O 0 1 N N N -0.287 18.382 17.544 -6.525 -4.038 1.561  O4    MMF 33 
MMF C5    C5    C 0 1 N N N 1.043  16.472 17.013 -5.944 -3.167 -0.472 C5    MMF 34 
MMF C5M   C5M   C 0 1 N N N -0.133 15.746 16.398 -6.317 -4.428 -1.209 C5M   MMF 35 
MMF C6    C6    C 0 1 N N N 2.308  15.871 17.046 -5.472 -2.096 -1.145 C6    MMF 36 
MMF H1    H1    H 0 1 N N N 6.808  10.178 11.325 4.203  3.150  -0.374 H1    MMF 37 
MMF H2    H2    H 0 1 N N N 8.801  13.399 13.920 5.643  0.594  0.974  H2    MMF 38 
MMF H3    H3    H 0 1 N N N 10.984 10.829 12.549 2.993  -1.878 0.724  H3    MMF 39 
MMF H4    H4    H 0 1 N N N 12.387 10.635 14.587 3.210  -2.743 3.038  H4    MMF 40 
MMF H5    H5    H 0 1 N N N 13.400 10.722 13.106 3.086  -4.077 1.866  H5    MMF 41 
MMF H6    H6    H 0 1 N N N 13.224 12.166 14.159 4.667  -3.648 2.563  H6    MMF 42 
MMF H7    H7    H 0 1 N N N 12.442 12.009 11.049 4.012  -3.785 -0.462 H7    MMF 43 
MMF H8    H8    H 0 1 N N N 13.505 13.240 12.737 5.775  -4.194 1.099  H8    MMF 44 
MMF H9    H9    H 0 1 N N N 10.135 12.508 10.555 4.004  -1.594 -1.592 H9    MMF 45 
MMF H10   H10   H 0 1 N N N 11.486 15.061 10.671 5.434  -3.625 -2.345 H10   MMF 46 
MMF H12   H12   H 0 1 N N N 12.494 14.823 8.588  6.040  -2.478 -4.343 H12   MMF 47 
MMF H13   H13   H 0 1 N N N 13.177 13.689 9.802  4.418  -1.974 -3.812 H13   MMF 48 
MMF H14   H14   H 0 1 N N N 11.989 13.100 8.590  5.824  -0.934 -3.484 H14   MMF 49 
MMF H15   H15   H 0 1 N N N 10.438 14.730 12.601 6.741  -1.219 -0.290 H15   MMF 50 
MMF H16   H16   H 0 1 N N N 7.929  13.951 11.652 6.521  0.905  -1.363 H16   MMF 51 
MMF H17   H17   H 0 1 N N N 6.438  8.751  15.369 0.811  4.457  -0.878 H17   MMF 52 
MMF H18   H18   H 0 1 N N N 4.735  12.988 15.001 -2.513 2.584  0.910  H18   MMF 53 
MMF H19   H19   H 0 1 N N N 3.972  12.861 16.622 -2.246 3.805  -0.357 H19   MMF 54 
MMF H20   H20   H 0 1 N N N 6.672  14.159 15.998 -2.863 2.044  -2.079 H20   MMF 55 
MMF H21   H21   H 0 1 N N N 5.443  16.737 17.756 -4.493 -0.039 -2.245 H21   MMF 56 
MMF H22   H22   H 0 1 N N N 5.247  15.327 19.591 -6.223 1.503  -1.890 H22   MMF 57 
MMF H23   H23   H 0 1 N N N 4.001  14.299 18.805 -6.158 1.309  -0.111 H23   MMF 58 
MMF H24   H24   H 0 1 N N N 5.956  13.015 18.393 -4.735 3.126  0.033  H24   MMF 59 
MMF H25   H25   H 0 1 N N N 7.420  14.641 19.198 -5.732 3.951  -1.975 H25   MMF 60 
MMF H26   H26   H 0 1 N N N 1.850  19.288 18.433 -5.861 -1.883 2.533  H26   MMF 61 
MMF H27   H27   H 0 1 N N N -1.031 16.377 16.468 -5.448 -5.083 -1.271 H27   MMF 62 
MMF H28   H28   H 0 1 N N N 0.082  15.529 15.341 -7.118 -4.938 -0.674 H28   MMF 63 
MMF H29   H29   H 0 1 N N N -0.305 14.803 16.938 -6.655 -4.175 -2.214 H29   MMF 64 
MMF H30   H30   H 0 1 N N N 2.448  14.878 16.644 -5.350 -2.139 -2.217 H30   MMF 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MMF C2M   N3Q   SING N N 1  
MMF N3Q   C3Q   SING N N 2  
MMF C3Q   C4Q   SING N N 3  
MMF C3Q   C2Q   SING N N 4  
MMF O2Q   C2Q   SING N N 5  
MMF C4Q   O4Q   SING N N 6  
MMF C4Q   C5Q   SING N N 7  
MMF O1B   PB    DOUB N N 8  
MMF C2Q   C1Q   SING N N 9  
MMF O2B   PB    SING N N 10 
MMF O3B   PB    SING N N 11 
MMF O3B   C1Q   SING N N 12 
MMF PB    O3A   SING N N 13 
MMF C5Q   C6Q   SING N N 14 
MMF C5Q   O5Q   SING N N 15 
MMF C1Q   O5Q   SING N N 16 
MMF O3A   PA    SING N N 17 
MMF O1A   PA    DOUB N N 18 
MMF PA    O2A   SING N N 19 
MMF PA    "O5'" SING N N 20 
MMF "C5'" "O5'" SING N N 21 
MMF "C5'" "C4'" SING N N 22 
MMF "O4'" "C4'" SING N N 23 
MMF "O4'" "C1'" SING N N 24 
MMF C5M   C5    SING N N 25 
MMF "C4'" "C3'" SING N N 26 
MMF C5    C6    DOUB N N 27 
MMF C5    C4    SING N N 28 
MMF C6    N1    SING N N 29 
MMF O4    C4    DOUB N N 30 
MMF C4    N3    SING N N 31 
MMF N1    "C1'" SING N N 32 
MMF N1    C2    SING N N 33 
MMF "C1'" "C2'" SING N N 34 
MMF "C3'" "O3'" SING N N 35 
MMF "C3'" "C2'" SING N N 36 
MMF N3    C2    SING N N 37 
MMF C2    O2    DOUB N N 38 
MMF O2B   H1    SING N N 39 
MMF C1Q   H2    SING N N 40 
MMF C5Q   H3    SING N N 41 
MMF C6Q   H4    SING N N 42 
MMF C6Q   H5    SING N N 43 
MMF C6Q   H6    SING N N 44 
MMF C4Q   H7    SING N N 45 
MMF O4Q   H8    SING N N 46 
MMF C3Q   H9    SING N N 47 
MMF N3Q   H10   SING N N 48 
MMF C2M   H12   SING N N 49 
MMF C2M   H13   SING N N 50 
MMF C2M   H14   SING N N 51 
MMF C2Q   H15   SING N N 52 
MMF O2Q   H16   SING N N 53 
MMF O2A   H17   SING N N 54 
MMF "C5'" H18   SING N N 55 
MMF "C5'" H19   SING N N 56 
MMF "C4'" H20   SING N N 57 
MMF "C1'" H21   SING N N 58 
MMF "C2'" H22   SING N N 59 
MMF "C2'" H23   SING N N 60 
MMF "C3'" H24   SING N N 61 
MMF "O3'" H25   SING N N 62 
MMF N3    H26   SING N N 63 
MMF C5M   H27   SING N N 64 
MMF C5M   H28   SING N N 65 
MMF C5M   H29   SING N N 66 
MMF C6    H30   SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MMF SMILES           ACDLabs              12.01 "O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(O)C(NC)C3O)C)O)O)C" 
MMF InChI            InChI                1.03  
"InChI=1S/C17H29N3O14P2/c1-7-5-20(17(25)19-15(7)24)11-4-9(21)10(32-11)6-30-35(26,27)34-36(28,29)33-16-14(23)12(18-3)13(22)8(2)31-16/h5,8-14,16,18,21-23H,4,6H2,1-3H3,(H,26,27)(H,28,29)(H,19,24,25)/t8-,9+,10-,11-,12+,13+,14-,16-/m1/s1" 
MMF InChIKey         InChI                1.03  CDWXXXLIBVLVLM-KYQZRJCOSA-N 
MMF SMILES_CANONICAL CACTVS               3.385 "CN[C@H]1[C@@H](O)[C@@H](C)O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@@H]1O" 
MMF SMILES           CACTVS               3.385 "CN[CH]1[CH](O)[CH](C)O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH]1O" 
MMF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)NC)O" 
MMF SMILES           "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)O)NC)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MMF "SYSTEMATIC NAME" ACDLabs              12.01 
"(2R,3R,4S,5R,6R)-3,5-dihydroxy-6-methyl-4-(methylamino)tetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
MMF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
"[[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4S,5R,6R)-6-methyl-4-(methylamino)-3,5-bis(oxidanyl)oxan-2-yl] hydrogen phosphate"                      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MMF "Create component" 2014-02-17 RCSB 
MMF "Initial release"  2014-02-26 RCSB 
# 
