data_MXF
# 
_chem_comp.id                                    MXF 
_chem_comp.name                                  "(2S,3R)-4-(2-aminoethylcarbamoyloxy)-2-[(2-methanoylindolizin-3-yl)amino]-3-methyl-3-sulfino-butanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H22 N4 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "penam sulfone SA3-53, open form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-01-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        426.444 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MXF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3FZC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MXF C1   C1   C 0 1 Y N N N N N 107.237 32.541 26.776 -4.337 3.129  -1.337 C1   MXF 1  
MXF C2   C2   C 0 1 Y N N N N N 106.534 31.267 26.847 -5.170 2.070  -1.186 C2   MXF 2  
MXF C3   C3   C 0 1 Y N N N N N 105.352 31.193 27.702 -4.671 0.866  -0.631 C3   MXF 3  
MXF C4   C4   C 0 1 Y N N N N N 104.445 30.097 27.992 -5.272 -0.331 -0.369 C4   MXF 4  
MXF C5   C5   C 0 1 Y N N N N N 103.507 30.556 28.861 -4.285 -1.184 0.191  C5   MXF 5  
MXF C6   C6   C 0 1 Y N N N N N 103.745 32.023 29.203 -3.098 -0.453 0.247  C6   MXF 6  
MXF C7   C7   C 0 1 Y N N N N N 105.610 33.595 28.364 -2.514 1.879  -0.419 C7   MXF 7  
MXF C8   C8   C 0 1 Y N N N N N 106.778 33.705 27.533 -2.986 3.022  -0.944 C8   MXF 8  
MXF C10  C10  C 0 1 N N N N N N 102.385 29.709 29.402 -4.471 -2.523 0.613  C10  MXF 9  
MXF C11  C11  C 0 1 N N S N N N 102.992 33.148 31.497 -0.811 0.050  0.448  C11  MXF 10 
MXF C12  C12  C 0 1 N N N N N N 103.815 34.439 31.644 -0.788 1.105  1.524  C12  MXF 11 
MXF C13  C13  C 0 1 N N R N N N 101.506 33.242 32.047 0.533  -0.681 0.421  C13  MXF 12 
MXF C14  C14  C 0 1 N N N N N N 100.801 34.524 31.475 0.725  -1.444 1.733  C14  MXF 13 
MXF C15  C15  C 0 1 N N N N N N 101.585 33.221 33.611 1.664  0.337  0.254  C15  MXF 14 
MXF C16  C16  C 0 1 N N N N N N 101.328 35.327 34.724 4.044  0.400  0.086  C16  MXF 15 
MXF N1   N1   N 0 1 Y N N N N N 104.973 32.341 28.395 -3.340 0.787  -0.252 N1   MXF 16 
MXF N3   N3   N 0 1 N N N N N N 102.971 32.808 30.057 -1.885 -0.911 0.728  N3   MXF 17 
MXF N4   N4   N 0 1 N N N N N N 102.574 35.218 35.347 5.259  -0.181 0.054  N4   MXF 18 
MXF O1   O1   O 0 1 N N N N N N 101.209 29.954 28.625 -5.561 -3.047 0.510  O1   MXF 19 
MXF O3   O3   O 0 1 N N N N N N 104.321 35.037 30.701 -1.584 1.061  2.431  O3   MXF 20 
MXF O4   O4   O 0 1 N N N N N N 104.040 35.060 32.992 0.119  2.094  1.474  O4   MXF 21 
MXF O5   O5   O 0 1 N N N N N N 99.100  32.059 32.119 1.881  -2.338 -1.149 O5   MXF 22 
MXF O6   O6   O 0 1 N N N N N N 101.097 30.408 32.104 0.360  -0.946 -2.177 O6   MXF 23 
MXF O7   O7   O 0 1 N N N N N N 100.762 34.182 34.239 2.939  -0.357 0.228  O7   MXF 24 
MXF O8   O8   O 0 1 N N N N N N 100.777 36.408 34.598 3.944  1.607  -0.015 O8   MXF 25 
MXF S1   S1   S 0 1 N N N N N N 100.455 31.847 31.537 0.559  -1.848 -0.967 S1   MXF 26 
MXF C17  C17  C 0 1 N N N N N N 102.686 34.751 36.654 6.461  0.642  -0.101 C17  MXF 27 
MXF C18  C18  C 0 1 N N N N N N 103.335 34.122 37.892 7.699  -0.258 -0.105 C18  MXF 28 
MXF N5   N5   N 0 1 N N N N N N 102.969 34.830 39.165 8.903  0.568  -0.261 N5   MXF 29 
MXF H1   H1   H 0 1 N N N N N N 108.114 32.628 26.152 -4.705 4.051  -1.763 H1   MXF 30 
MXF H2   H2   H 0 1 N N N N N N 106.875 30.408 26.288 -6.206 2.145  -1.485 H2   MXF 31 
MXF H4   H4   H 0 1 N N N N N N 104.505 29.097 27.589 -6.306 -0.583 -0.553 H4   MXF 32 
MXF H7   H7   H 0 1 N N N N N N 105.240 34.433 28.936 -1.478 1.815  -0.123 H7   MXF 33 
MXF H8   H8   H 0 1 N N N N N N 107.313 34.641 27.468 -2.325 3.867  -1.066 H8   MXF 34 
MXF H10  H10  H 0 1 N N N N N N 102.456 29.029 30.238 -3.642 -3.078 1.027  H10  MXF 35 
MXF H11  H11  H 0 1 N N N N N N 103.504 32.346 32.049 -0.988 0.521  -0.519 H11  MXF 36 
MXF H14  H14  H 0 1 N N N N N N 99.773  34.581 31.861 -0.081 -2.169 1.852  H14  MXF 37 
MXF H14A H14A H 0 0 N N N N N N 101.359 35.419 31.786 1.682  -1.965 1.714  H14A MXF 38 
MXF H14B H14B H 0 0 N N N N N N 100.778 34.470 30.377 0.709  -0.743 2.567  H14B MXF 39 
MXF H15  H15  H 0 1 N N N N N N 101.280 32.223 33.960 1.527  0.881  -0.681 H15  MXF 40 
MXF H15A H15A H 0 0 N N N N N N 102.627 33.411 33.908 1.648  1.038  1.088  H15A MXF 41 
MXF HN3  HN3  H 0 1 N N N N N N 103.011 33.707 29.621 -1.941 -1.114 1.715  HN3  MXF 42 
MXF HN4  HN4  H 0 1 N N N N N N 103.399 35.480 34.846 5.338  -1.145 0.135  HN4  MXF 43 
MXF HO4  HO4  H 0 1 N N N N N N 104.560 35.849 32.895 0.094  2.748  2.186  HO4  MXF 44 
MXF HO6  HO6  H 0 1 N N N N N N 100.477 29.994 32.692 0.348  -1.417 -3.021 HO6  MXF 45 
MXF H17  H17  H 0 1 N N N N N N 102.384 35.689 37.142 6.407  1.190  -1.041 H17  MXF 46 
MXF H17A H17A H 0 0 N N N N N N 101.826 34.067 36.610 6.528  1.347  0.727  H17A MXF 47 
MXF H18  H18  H 0 1 N N N N N N 103.008 33.074 37.966 7.753  -0.806 0.835  H18  MXF 48 
MXF H18A H18A H 0 0 N N N N N N 104.428 34.157 37.772 7.632  -0.963 -0.933 H18A MXF 49 
MXF HN5  HN5  H 0 1 N N N N N N 103.417 34.381 39.938 9.735  -0.004 -0.267 HN5  MXF 50 
MXF HN5A HN5A H 0 0 N N N N N N 103.268 35.783 39.114 8.848  1.135  -1.094 HN5A MXF 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MXF C1  C2   DOUB Y N 1  
MXF C1  C8   SING Y N 2  
MXF C2  C3   SING Y N 3  
MXF C3  C4   DOUB Y N 4  
MXF C3  N1   SING Y N 5  
MXF C4  C5   SING Y N 6  
MXF C5  C6   DOUB Y N 7  
MXF C5  C10  SING N N 8  
MXF C6  N1   SING Y N 9  
MXF C6  N3   SING N N 10 
MXF C7  C8   DOUB Y N 11 
MXF C7  N1   SING Y N 12 
MXF C10 O1   DOUB N N 13 
MXF C11 C12  SING N N 14 
MXF C11 C13  SING N N 15 
MXF C11 N3   SING N N 16 
MXF C12 O3   DOUB N N 17 
MXF C12 O4   SING N N 18 
MXF C13 C14  SING N N 19 
MXF C13 C15  SING N N 20 
MXF C13 S1   SING N N 21 
MXF C15 O7   SING N N 22 
MXF C16 N4   SING N N 23 
MXF C16 O7   SING N N 24 
MXF C16 O8   DOUB N N 25 
MXF N4  C17  SING N N 26 
MXF O5  S1   DOUB N N 27 
MXF O6  S1   SING N N 28 
MXF C17 C18  SING N N 29 
MXF C18 N5   SING N N 30 
MXF C1  H1   SING N N 31 
MXF C2  H2   SING N N 32 
MXF C4  H4   SING N N 33 
MXF C7  H7   SING N N 34 
MXF C8  H8   SING N N 35 
MXF C10 H10  SING N N 36 
MXF C11 H11  SING N N 37 
MXF C14 H14  SING N N 38 
MXF C14 H14A SING N N 39 
MXF C14 H14B SING N N 40 
MXF C15 H15  SING N N 41 
MXF C15 H15A SING N N 42 
MXF N3  HN3  SING N N 43 
MXF N4  HN4  SING N N 44 
MXF O4  HO4  SING N N 45 
MXF O6  HO6  SING N N 46 
MXF C17 H17  SING N N 47 
MXF C17 H17A SING N N 48 
MXF C18 H18  SING N N 49 
MXF C18 H18A SING N N 50 
MXF N5  HN5  SING N N 51 
MXF N5  HN5A SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MXF SMILES           ACDLabs              12.01 "O=C(O)C(Nc2c(cc1ccccn12)C=O)C(S(=O)O)(C)COC(=O)NCCN"                                                                                                                                  
MXF InChI            InChI                1.03  "InChI=1S/C17H22N4O7S/c1-17(29(26)27,10-28-16(25)19-6-5-18)13(15(23)24)20-14-11(9-22)8-12-4-2-3-7-21(12)14/h2-4,7-9,13,20H,5-6,10,18H2,1H3,(H,19,25)(H,23,24)(H,26,27)/t13-,17-/m0/s1" 
MXF InChIKey         InChI                1.03  UGXGYKKZKHIUJW-GUYCJALGSA-N                                                                                                                                                            
MXF SMILES_CANONICAL CACTVS               3.370 "C[C@](COC(=O)NCCN)([C@@H](Nc1n2ccccc2cc1C=O)C(O)=O)[S](O)=O"                                                                                                                          
MXF SMILES           CACTVS               3.370 "C[C](COC(=O)NCCN)([CH](Nc1n2ccccc2cc1C=O)C(O)=O)[S](O)=O"                                                                                                                             
MXF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@](COC(=O)NCCN)([C@H](C(=O)O)Nc1c(cc2n1cccc2)C=O)[S@](=O)O"                                                                                                                        
MXF SMILES           "OpenEye OEToolkits" 1.7.6 "CC(COC(=O)NCCN)(C(C(=O)O)Nc1c(cc2n1cccc2)C=O)S(=O)O"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MXF "SYSTEMATIC NAME" ACDLabs              12.01 "(3R)-4-{[(2-aminoethyl)carbamoyl]oxy}-N-(2-formylindolizin-3-yl)-3-sulfino-D-valine"                                       
MXF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R)-4-(2-azanylethylcarbamoyloxy)-2-[(2-methanoylindolizin-3-yl)amino]-3-methyl-3-[(R)-oxidanylsulfinyl]butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MXF "Create component"     2009-01-28 PDBJ 
MXF "Modify aromatic_flag" 2011-06-04 RCSB 
MXF "Modify descriptor"    2011-06-04 RCSB 
MXF "Modify synonyms"      2012-10-26 RCSB 
MXF "Modify synonyms"      2021-03-13 RCSB 
MXF "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      MXF 
_pdbx_chem_comp_synonyms.name         "penam sulfone SA3-53, open form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            MXF 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C10 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
