data_NGF
#

_chem_comp.id                                   NGF
_chem_comp.name                                 "3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-D-galacto-non-2-ulosonic acid"
_chem_comp.type                                 D-SACCHARIDE
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H19 N O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-glycolylneuraminic acid, ketone form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-01-04
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       325.269
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NGF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4IMG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NGF  O10  O10  O  0  1  N  N  N  28.943  30.744  21.256  -0.036   2.380  -1.056  O10  NGF   1  
NGF  C10  C10  C  0  1  N  N  N  28.375  29.703  20.921  -0.044   2.236   0.148  C10  NGF   2  
NGF  C11  C11  C  0  1  N  N  N  27.705  29.654  19.551  -0.199   3.434   1.049  C11  NGF   3  
NGF  N5   N5   N  0  1  N  N  N  28.397  28.604  21.692   0.082   1.004   0.681  N5   NGF   4  
NGF  C5   C5   C  0  1  N  N  R  28.006  27.255  21.185   0.117  -0.171  -0.193  C5   NGF   5  
NGF  C4   C4   C  0  1  N  N  S  27.137  26.377  22.094  -1.117  -1.038   0.068  C4   NGF   6  
NGF  O4   O4   O  0  1  N  N  N  27.610  26.466  23.466  -1.109  -1.481   1.427  O4   NGF   7  
NGF  C3   C3   C  0  1  N  N  N  25.613  26.419  21.713  -2.381  -0.217  -0.193  C3   NGF   8  
NGF  C6   C6   C  0  1  N  N  R  29.116  26.304  20.748   1.381  -0.983   0.096  C6   NGF   9  
NGF  O6   O6   O  0  1  N  N  N  28.414  25.083  20.349   1.416  -2.130  -0.756  O6   NGF  10  
NGF  C2   C2   C  0  1  N  N  N  24.932  27.326  22.671  -3.592  -1.103  -0.056  C2   NGF  11  
NGF  O2   O2   O  0  1  N  N  N  25.529  27.545  23.607  -3.458  -2.270   0.222  O2   NGF  12  
NGF  C1   C1   C  0  1  N  N  N  23.665  27.961  22.558  -4.956  -0.538  -0.264  C1   NGF  13  
NGF  O1   O1   O  0  1  N  N  N  22.843  27.716  21.676  -5.091   0.635  -0.543  O1   NGF  14  
NGF  O3   O3   O  0  1  N  N  N  23.394  28.762  23.457  -6.038  -1.329  -0.141  O3   NGF  15  
NGF  C7   C7   C  0  1  N  N  S  29.839  26.864  19.534   2.615  -0.117  -0.164  C7   NGF  16  
NGF  O7   O7   O  0  1  N  N  N  28.812  27.258  18.592   2.561   0.400  -1.496  O7   NGF  17  
NGF  C8   C8   C  0  1  N  N  R  30.813  25.880  18.874   3.878  -0.964   0.004  C8   NGF  18  
NGF  O8   O8   O  0  1  N  N  N  31.590  25.213  19.889   3.931  -1.480   1.335  O8   NGF  19  
NGF  C9   C9   C  0  1  N  N  N  31.729  26.577  17.870   5.111  -0.097  -0.257  C9   NGF  20  
NGF  O9   O9   O  0  1  N  N  N  32.316  27.676  18.559   6.284  -0.913  -0.215  O9   NGF  21  
NGF  O5   O5   O  0  1  N  N  N  26.262  29.520  19.551  -0.319   4.616   0.254  O5   NGF  22  
NGF  H1   H1   H  0  1  N  N  N  28.122  28.796  19.003  -1.094   3.316   1.661  H1   NGF  23  
NGF  H2   H2   H  0  1  N  N  N  27.956  30.584  19.021   0.674   3.519   1.696  H2   NGF  24  
NGF  H3   H3   H  0  1  N  N  N  28.687  28.693  22.645   0.148   0.896   1.643  H3   NGF  25  
NGF  H4   H4   H  0  1  N  N  N  27.400  27.435  20.285   0.122   0.150  -1.234  H4   NGF  26  
NGF  H5   H5   H  0  1  N  N  N  27.426  25.359  21.792  -1.101  -1.902  -0.596  H5   NGF  27  
NGF  H6   H6   H  0  1  N  N  N  26.963  26.917  23.996  -1.048  -0.765   2.074  H6   NGF  28  
NGF  H7   H7   H  0  1  N  N  N  25.494  26.799  20.688  -2.442   0.597   0.530  H7   NGF  29  
NGF  H8   H8   H  0  1  N  N  N  25.182  25.409  21.782  -2.345   0.195  -1.202  H8   NGF  30  
NGF  H9   H9   H  0  1  N  N  N  29.820  26.119  21.573   1.376  -1.305   1.138  H9   NGF  31  
NGF  H10  H10  H  0  1  N  N  N  27.957  24.721  21.099   1.422  -1.919  -1.699  H10  NGF  32  
NGF  H11  H11  H  0  1  N  N  N  22.516  29.101  23.326  -6.901  -0.918  -0.285  H11  NGF  33  
NGF  H12  H12  H  0  1  N  N  N  30.407  27.753  19.847   2.635   0.710   0.545  H12  NGF  34  
NGF  H13  H13  H  0  1  N  N  N  28.215  27.867  19.010   2.541  -0.282  -2.181  H13  NGF  35  
NGF  H14  H14  H  0  1  N  N  N  30.219  25.132  18.328   3.858  -1.791  -0.706  H14  NGF  36  
NGF  H15  H15  H  0  1  N  N  N  31.007  24.785  20.505   3.951  -0.799   2.021  H15  NGF  37  
NGF  H16  H16  H  0  1  N  N  N  31.147  26.935  17.008   5.028   0.368  -1.240  H16  NGF  38  
NGF  H17  H17  H  0  1  N  N  N  32.510  25.885  17.523   5.180   0.677   0.507  H17  NGF  39  
NGF  H18  H18  H  0  1  N  N  N  32.898  28.144  17.972   7.106  -0.429  -0.372  H18  NGF  40  
NGF  H19  H19  H  0  1  N  N  N  25.945  29.499  18.656  -0.423   5.427   0.769  H19  NGF  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NGF  C9   O9   SING  N  N   1  
NGF  C9   C8   SING  N  N   2  
NGF  O7   C7   SING  N  N   3  
NGF  C8   C7   SING  N  N   4  
NGF  C8   O8   SING  N  N   5  
NGF  C7   C6   SING  N  N   6  
NGF  O5   C11  SING  N  N   7  
NGF  C11  C10  SING  N  N   8  
NGF  O6   C6   SING  N  N   9  
NGF  C6   C5   SING  N  N  10  
NGF  C10  O10  DOUB  N  N  11  
NGF  C10  N5   SING  N  N  12  
NGF  C5   N5   SING  N  N  13  
NGF  C5   C4   SING  N  N  14  
NGF  O1   C1   DOUB  N  N  15  
NGF  C3   C4   SING  N  N  16  
NGF  C3   C2   SING  N  N  17  
NGF  C4   O4   SING  N  N  18  
NGF  C1   C2   SING  N  N  19  
NGF  C1   O3   SING  N  N  20  
NGF  C2   O2   DOUB  N  N  21  
NGF  C11  H1   SING  N  N  22  
NGF  C11  H2   SING  N  N  23  
NGF  N5   H3   SING  N  N  24  
NGF  C5   H4   SING  N  N  25  
NGF  C4   H5   SING  N  N  26  
NGF  O4   H6   SING  N  N  27  
NGF  C3   H7   SING  N  N  28  
NGF  C3   H8   SING  N  N  29  
NGF  C6   H9   SING  N  N  30  
NGF  O6   H10  SING  N  N  31  
NGF  O3   H11  SING  N  N  32  
NGF  C7   H12  SING  N  N  33  
NGF  O7   H13  SING  N  N  34  
NGF  C8   H14  SING  N  N  35  
NGF  O8   H15  SING  N  N  36  
NGF  C9   H16  SING  N  N  37  
NGF  C9   H17  SING  N  N  38  
NGF  O9   H18  SING  N  N  39  
NGF  O5   H19  SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NGF  SMILES            ACDLabs               12.01  "O=C(O)C(=O)CC(O)C(NC(=O)CO)C(O)C(O)C(O)CO"  
NGF  InChI             InChI                 1.03   "InChI=1S/C11H19NO10/c13-2-6(17)9(19)10(20)8(12-7(18)3-14)4(15)1-5(16)11(21)22/h4,6,8-10,13-15,17,19-20H,1-3H2,(H,12,18)(H,21,22)/t4-,6+,8+,9+,10+/m0/s1"  
NGF  InChIKey          InChI                 1.03   SUHQNCLNRUAGOO-KQCZLNONSA-N  
NGF  SMILES_CANONICAL  CACTVS                3.370  "OC[C@@H](O)[C@@H](O)[C@H](O)[C@H](NC(=O)CO)[C@@H](O)CC(=O)C(O)=O"  
NGF  SMILES            CACTVS                3.370  "OC[CH](O)[CH](O)[CH](O)[CH](NC(=O)CO)[CH](O)CC(=O)C(O)=O"  
NGF  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]([C@H]([C@H]([C@@H]([C@@H](CO)O)O)O)NC(=O)CO)O)C(=O)C(=O)O"  
NGF  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C(C(C(C(C(CO)O)O)O)NC(=O)CO)O)C(=O)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NGF  "SYSTEMATIC NAME"  ACDLabs               12.01  "3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-D-galacto-non-2-ulosonic acid"  
NGF  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(4S,5R,6R,7S,8R)-4,6,7,8,9-pentakis(oxidanyl)-5-(2-oxidanylethanoylamino)-2-oxidanylidene-nonanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NGF  "Create component"  2013-01-04  RCSB  
NGF  "Initial release"   2013-11-06  RCSB  
NGF  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     NGF
_pdbx_chem_comp_synonyms.name        "N-glycolylneuraminic acid, ketone form"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
