data_NPF
#

_chem_comp.id                                   NPF
_chem_comp.name                                 "2-nitrophenyl beta-D-fucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H15 N O7"
_chem_comp.mon_nstd_parent_comp_id              FCB
_chem_comp.pdbx_synonyms                        
;ORTHONITROPHENYL-BETA-D-FUCOPYRANOSIDE; 2-nitrophenyl 6-deoxy-beta-D-galactopyranoside; 2-nitrophenyl beta-D-fucoside;
2-nitrophenyl D-fucoside; 2-nitrophenyl fucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2000-02-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       285.250
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NPF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1EFA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  NPF  ORTHONITROPHENYL-BETA-D-FUCOPYRANOSIDE            PDB  ?  
2  NPF  "2-nitrophenyl 6-deoxy-beta-D-galactopyranoside"  PDB  ?  
3  NPF  "2-nitrophenyl beta-D-fucoside"                   PDB  ?  
4  NPF  "2-nitrophenyl D-fucoside"                        PDB  ?  
5  NPF  "2-nitrophenyl fucoside"                          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NPF  C1A  C1      C   0  1  Y  N  N   5.785  81.059  25.467   1.508   0.236  -0.220  C1A  NPF   1  
NPF  C2A  C2      C   0  1  Y  N  N   5.025  80.907  24.263   1.118   1.482  -0.692  C2A  NPF   2  
NPF  C3A  C3      C   0  1  Y  N  N   3.776  80.274  24.186   2.062   2.468  -0.899  C3A  NPF   3  
NPF  C4A  C4      C   0  1  Y  N  N   3.230  79.772  25.385   3.396   2.214  -0.638  C4A  NPF   4  
NPF  C5A  C5      C   0  1  Y  N  N   3.942  79.886  26.602   3.788   0.975  -0.168  C5A  NPF   5  
NPF  C6A  C6      C   0  1  Y  N  N   5.216  80.508  26.651   2.846  -0.013   0.047  C6A  NPF   6  
NPF  N6   N6      N   1  1  N  N  N   5.844  80.577  27.913   3.266  -1.340   0.550  N6   NPF   7  
NPF  O6A  O6A     O  -1  1  N  N  N   6.943  81.116  28.090   4.442  -1.562   0.775  O6A  NPF   8  
NPF  O6B  O6B     O   0  1  N  N  N   5.231  80.067  28.853   2.435  -2.210   0.739  O6B  NPF   9  
NPF  O1   "O1'"   O   0  1  N  N  N   6.596  82.220  25.697   0.580  -0.735  -0.015  O1   NPF  10  
NPF  C1   "C1'"   C   0  1  N  N  S   7.885  82.626  25.166  -0.687  -0.178  -0.370  C1   NPF  11  
NPF  C2   "C2'"   C   0  1  N  N  R   8.033  82.971  23.645  -1.760  -1.265  -0.286  C2   NPF  12  
NPF  O2   "O2'"   O   0  1  N  N  N   8.094  81.803  22.797  -1.422  -2.340  -1.165  O2   NPF  13  
NPF  C3   "C3'"   C   0  1  N  N  S   9.238  83.851  23.356  -3.110  -0.668  -0.700  C3   NPF  14  
NPF  O3   "O3'"   O   0  1  N  N  N   9.193  84.176  21.959  -4.146  -1.628  -0.486  O3   NPF  15  
NPF  C4   "C4'"   C   0  1  N  N  R   9.141  85.138  24.158  -3.375   0.578   0.152  C4   NPF  16  
NPF  O4   "O4'"   O   0  1  N  N  N   7.980  85.826  23.646  -3.553   0.195   1.517  O4   NPF  17  
NPF  C5   "C5'"   C   0  1  N  N  R   9.053  84.810  25.659  -2.180   1.527   0.034  C5   NPF  18  
NPF  C6   "C6'"   C   0  1  N  N  N   8.846  86.079  26.452  -2.451   2.790   0.854  C6   NPF  19  
NPF  O5   "O5'"   O   0  1  N  N  N   7.990  83.866  25.921  -1.005   0.885   0.526  O5   NPF  20  
NPF  H2A  H2      H   0  1  N  N  N   5.433  81.309  23.320   0.076   1.680  -0.897  H2A  NPF  21  
NPF  H3A  H3      H   0  1  N  N  N   3.245  80.175  23.223   1.759   3.437  -1.267  H3A  NPF  22  
NPF  H4A  H4      H   0  1  N  N  N   2.239  79.287  25.370   4.134   2.986  -0.802  H4A  NPF  23  
NPF  H5A  H5      H   0  1  N  N  N   3.496  79.483  27.527   4.831   0.780   0.035  H5A  NPF  24  
NPF  H1   "H1'"   H   0  1  N  N  N   8.633  81.804  25.255  -0.640   0.208  -1.388  H1   NPF  25  
NPF  H2   "H2'"   H   0  1  N  N  N   7.102  83.535  23.401  -1.825  -1.637   0.737  H2   NPF  26  
NPF  HO2  "HO'2"  H   0  1  N  Y  N   8.183  82.012  21.874  -0.565  -2.681  -0.872  HO2  NPF  27  
NPF  H3   "H3'"   H   0  1  N  N  N  10.182  83.325  23.627  -3.080  -0.391  -1.754  H3   NPF  28  
NPF  HO3  "HO'3"  H   0  1  N  Y  N   9.946  84.726  21.778  -3.931  -2.398  -1.031  HO3  NPF  29  
NPF  H4   "H4'"   H   0  1  N  N  N  10.037  85.793  24.053  -4.274   1.080  -0.206  H4   NPF  30  
NPF  HO4  "HO'4"  H   0  1  N  Y  N   7.919  86.630  24.147  -3.717   1.006   2.017  HO4  NPF  31  
NPF  H5   "H5'"   H   0  1  N  N  N  10.012  84.338  25.975  -2.034   1.798  -1.011  H5   NPF  32  
NPF  H61  "H6'1"  H   0  1  N  N  N   8.782  85.841  27.539  -1.601   3.468   0.769  H61  NPF  33  
NPF  H62  "H6'2"  H   0  1  N  N  N   9.631  86.840  26.235  -3.347   3.283   0.477  H62  NPF  34  
NPF  H63  "H6'3"  H   0  1  N  N  N   7.959  86.654  26.096  -2.597   2.520   1.900  H63  NPF  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NPF  C1A  C2A  DOUB  Y  N   1  
NPF  C1A  C6A  SING  Y  N   2  
NPF  C1A  O1   SING  N  N   3  
NPF  C2A  C3A  SING  Y  N   4  
NPF  C2A  H2A  SING  N  N   5  
NPF  C3A  C4A  DOUB  Y  N   6  
NPF  C3A  H3A  SING  N  N   7  
NPF  C4A  C5A  SING  Y  N   8  
NPF  C4A  H4A  SING  N  N   9  
NPF  C5A  C6A  DOUB  Y  N  10  
NPF  C5A  H5A  SING  N  N  11  
NPF  C6A  N6   SING  N  N  12  
NPF  N6   O6A  SING  N  N  13  
NPF  N6   O6B  DOUB  N  N  14  
NPF  O1   C1   SING  N  N  15  
NPF  C1   C2   SING  N  N  16  
NPF  C1   O5   SING  N  N  17  
NPF  C1   H1   SING  N  N  18  
NPF  C2   O2   SING  N  N  19  
NPF  C2   C3   SING  N  N  20  
NPF  C2   H2   SING  N  N  21  
NPF  O2   HO2  SING  N  N  22  
NPF  C3   O3   SING  N  N  23  
NPF  C3   C4   SING  N  N  24  
NPF  C3   H3   SING  N  N  25  
NPF  O3   HO3  SING  N  N  26  
NPF  C4   O4   SING  N  N  27  
NPF  C4   C5   SING  N  N  28  
NPF  C4   H4   SING  N  N  29  
NPF  O4   HO4  SING  N  N  30  
NPF  C5   C6   SING  N  N  31  
NPF  C5   O5   SING  N  N  32  
NPF  C5   H5   SING  N  N  33  
NPF  C6   H61  SING  N  N  34  
NPF  C6   H62  SING  N  N  35  
NPF  C6   H63  SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NPF  SMILES            ACDLabs               10.04  "[O-][N+](=O)c2c(OC1OC(C(O)C(O)C1O)C)cccc2"  
NPF  SMILES_CANONICAL  CACTVS                3.341  "C[C@H]1O[C@@H](Oc2ccccc2[N+]([O-])=O)[C@H](O)[C@@H](O)[C@H]1O"  
NPF  SMILES            CACTVS                3.341  "C[CH]1O[CH](Oc2ccccc2[N+]([O-])=O)[CH](O)[CH](O)[CH]1O"  
NPF  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)Oc2ccccc2[N+](=O)[O-])O)O)O"  
NPF  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(C(C(O1)Oc2ccccc2[N+](=O)[O-])O)O)O"  
NPF  InChI             InChI                 1.03   "InChI=1S/C12H15NO7/c1-6-9(14)10(15)11(16)12(19-6)20-8-5-3-2-4-7(8)13(17)18/h2-6,9-12,14-16H,1H3/t6-,9+,10+,11-,12+/m1/s1"  
NPF  InChIKey          InChI                 1.03   SWRPIVXPHLYETN-BVWHHUJWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NPF  "SYSTEMATIC NAME"            ACDLabs               10.04  "2-nitrophenyl 6-deoxy-beta-D-galactopyranoside"  
NPF  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "(2R,3R,4S,5R,6S)-2-methyl-6-(2-nitrophenoxy)oxane-3,4,5-triol"  
NPF  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    orthonitrophenyl-b-D-fucopyranoside  
#
_pdbx_chem_comp_related.comp_id            NPF
_pdbx_chem_comp_related.related_comp_id    FCB
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  NPF  C1   FCB  C1   "Carbohydrate core"  
 2  NPF  C2   FCB  C2   "Carbohydrate core"  
 3  NPF  C3   FCB  C3   "Carbohydrate core"  
 4  NPF  C4   FCB  C4   "Carbohydrate core"  
 5  NPF  C5   FCB  C5   "Carbohydrate core"  
 6  NPF  C6   FCB  C6   "Carbohydrate core"  
 7  NPF  O1   FCB  O1   "Carbohydrate core"  
 8  NPF  O2   FCB  O2   "Carbohydrate core"  
 9  NPF  O3   FCB  O3   "Carbohydrate core"  
10  NPF  O4   FCB  O4   "Carbohydrate core"  
11  NPF  O5   FCB  O5   "Carbohydrate core"  
12  NPF  H1   FCB  H1   "Carbohydrate core"  
13  NPF  H2   FCB  H2   "Carbohydrate core"  
14  NPF  H3   FCB  H3   "Carbohydrate core"  
15  NPF  H4   FCB  H4   "Carbohydrate core"  
16  NPF  H5   FCB  H5   "Carbohydrate core"  
17  NPF  H61  FCB  H61  "Carbohydrate core"  
18  NPF  H62  FCB  H62  "Carbohydrate core"  
19  NPF  H63  FCB  H63  "Carbohydrate core"  
20  NPF  HO2  FCB  HO2  "Carbohydrate core"  
21  NPF  HO3  FCB  HO3  "Carbohydrate core"  
22  NPF  HO4  FCB  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
NPF  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
NPF  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
NPF  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
NPF  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NPF  "Create component"          2000-02-08  RCSB  
NPF  "Modify descriptor"         2011-06-04  RCSB  
NPF  "Other modification"        2020-07-03  RCSB  
NPF  "Modify parent residue"     2020-07-17  RCSB  
NPF  "Modify name"               2020-07-17  RCSB  
NPF  "Modify synonyms"           2020-07-17  RCSB  
NPF  "Modify internal type"      2020-07-17  RCSB  
NPF  "Modify linking type"       2020-07-17  RCSB  
NPF  "Modify atom id"            2020-07-17  RCSB  
NPF  "Modify component atom id"  2020-07-17  RCSB  
NPF  "Modify leaving atom flag"  2020-07-17  RCSB  
##
