data_ODF
# 
_chem_comp.id                                    ODF 
_chem_comp.name                                  "5-oxidanyl-1~{H}-pyrimidine-2,4-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C4 H4 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "5-Hydroxy-2,4(1H,3H)-pyrimidinedion" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-31 
_chem_comp.pdbx_modified_date                    2023-07-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        128.086 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ODF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8I6B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ODF O3 O1 O 0 1 N N N 28.181 -11.485 43.286 -2.739 0.240  -0.002 O3 ODF 1  
ODF C4 C1 C 0 1 N N N 27.386 -10.856 42.681 -1.542 0.025  -0.002 C4 ODF 2  
ODF N1 N1 N 0 1 N N N 27.723 -9.706  41.998 -0.683 1.061  0.000  N1 ODF 3  
ODF C2 C2 C 0 1 N N N 26.852 -8.887  41.332 0.647  0.842  0.000  C2 ODF 4  
ODF O2 O2 O 0 1 N N N 27.193 -7.847  40.813 1.424  1.780  0.002  O2 ODF 5  
ODF N2 N2 N 0 1 N N N 26.105 -11.317 42.526 -1.097 -1.245 0.002  N2 ODF 6  
ODF C3 C3 C 0 1 N N N 25.084 -10.535 41.816 0.249  -1.513 0.002  C3 ODF 7  
ODF C1 C4 C 0 1 N N N 25.501 -9.409  41.192 1.134  -0.492 -0.002 C1 ODF 8  
ODF O1 O3 O 0 1 N N N 24.592 -8.626  40.550 2.474  -0.738 -0.002 O1 ODF 9  
ODF H1 H1 H 0 1 N N N 28.689 -9.448  41.989 -1.023 1.969  0.002  H1 ODF 10 
ODF H2 H2 H 0 1 N N N 24.049 -10.844 41.793 0.599  -2.535 0.006  H2 ODF 11 
ODF H4 H4 H 0 1 N N N 25.016 -7.832  40.245 2.701  -1.678 -0.003 H4 ODF 12 
ODF H5 H5 H 0 1 N N N 25.859 -12.209 42.906 -1.734 -1.977 0.004  H5 ODF 13 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ODF O1 C1 SING N N 1  
ODF O2 C2 DOUB N N 2  
ODF C1 C2 SING N N 3  
ODF C1 C3 DOUB N N 4  
ODF C2 N1 SING N N 5  
ODF C3 N2 SING N N 6  
ODF N1 C4 SING N N 7  
ODF N2 C4 SING N N 8  
ODF C4 O3 DOUB N N 9  
ODF N1 H1 SING N N 10 
ODF C3 H2 SING N N 11 
ODF O1 H4 SING N N 12 
ODF N2 H5 SING N N 13 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ODF InChI            InChI                1.06  "InChI=1S/C4H4N2O3/c7-2-1-5-4(9)6-3(2)8/h1,7H,(H2,5,6,8,9)" 
ODF InChIKey         InChI                1.06  OFJNVANOCZHTMW-UHFFFAOYSA-N                                 
ODF SMILES_CANONICAL CACTVS               3.385 "OC1=CNC(=O)NC1=O"                                          
ODF SMILES           CACTVS               3.385 "OC1=CNC(=O)NC1=O"                                          
ODF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C(C(=O)NC(=O)N1)O"                                      
ODF SMILES           "OpenEye OEToolkits" 2.0.7 "C1=C(C(=O)NC(=O)N1)O"                                      
# 
_pdbx_chem_comp_identifier.comp_id           ODF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-oxidanyl-1~{H}-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ODF "Create component"  2023-01-31 PDBJ 
ODF "Modify descriptor" 2023-03-07 PDBJ 
ODF "Initial release"   2023-07-12 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      ODF 
_pdbx_chem_comp_synonyms.name         "5-Hydroxy-2,4(1H,3H)-pyrimidinedion" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
