data_P9F
# 
_chem_comp.id                                    P9F 
_chem_comp.name                                  "(2S)-2-[[(2S)-2-[(4-chloranylphenoxy)carbonylamino]-3-cyclohexyl-propanoyl]amino]-3-phenyl-propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H29 Cl N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2~{S})-2-[[(2~{S})-2-[(4-chloranylphenoxy)carbonylamino]-3-cyclohexyl-propanoyl]amino]-3-phenyl-propanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        472.961 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     P9F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8B4T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
P9F C1  C1  C  0 1 N N N N N N 12.921 5.618 -18.617 -4.585 0.424  -1.971 C1  P9F 1  
P9F C3  C2  C  0 1 N N N N N N 12.181 3.980 -20.460 -4.779 -1.128 -0.047 C3  P9F 2  
P9F C5  C3  C  0 1 Y N N N N N 10.350 5.046 -21.848 -3.306 -1.980 1.789  C5  P9F 3  
P9F C6  C4  C  0 1 Y N N N N N 9.927  6.126 -22.664 -2.686 -3.013 2.468  C6  P9F 4  
P9F N2  N1  N  0 1 N N N N N N 8.418  3.206 -15.951 0.897  0.217  -1.469 N2  P9F 5  
P9F C13 C5  C  0 1 N N N N N N 8.682  6.175 -15.484 -1.447 2.402  0.550  C13 P9F 6  
P9F C12 C6  C  0 1 N N N N N N 8.145  5.523 -16.749 -0.343 2.065  -0.454 C12 P9F 7  
P9F C9  C7  C  0 1 Y N N N N N 12.539 6.113 -21.726 -4.267 -3.558 0.266  C9  P9F 8  
P9F O4  O1  O  0 1 N N N N N N 12.347 6.654 -18.210 -5.720 0.103  -2.612 O4  P9F 9  
P9F O1  O2  O  0 1 N N N N N N 14.166 5.420 -18.713 -4.149 1.549  -2.042 O1  P9F 10 
P9F C2  C8  C  0 1 N N S N N N 12.033 4.386 -18.942 -3.859 -0.616 -1.157 C2  P9F 11 
P9F C4  C9  C  0 1 Y N N N N N 11.671 5.052 -21.391 -4.098 -2.253 0.690  C4  P9F 12 
P9F C8  C10 C  0 1 Y N N N N N 12.117 7.163 -22.540 -3.652 -4.591 0.948  C8  P9F 13 
P9F C7  C11 C  0 1 Y N N N N N 10.814 7.168 -23.003 -2.860 -4.318 2.048  C7  P9F 14 
P9F N1  N2  N  0 1 N N N N N N 10.626 4.561 -18.528 -2.660 -0.021 -0.563 N1  P9F 15 
P9F C10 C12 C  0 1 N N N N N N 10.222 4.091 -17.353 -1.515 0.038  -1.271 C10 P9F 16 
P9F O3  O3  O  0 1 N N N N N N 11.032 3.571 -16.562 -1.500 -0.319 -2.431 O3  P9F 17 
P9F C11 C13 C  0 1 N N S N N N 8.676  4.141 -17.056 -0.253 0.547  -0.623 C11 P9F 18 
P9F C19 C14 C  0 1 N N N N N N 8.321  1.932 -16.273 2.133  0.165  -0.934 C19 P9F 19 
P9F O2  O4  O  0 1 N N N N N N 8.528  1.461 -17.358 2.283  0.300  0.264  O2  P9F 20 
P9F C18 C15 C  0 1 N N N N N N 7.716  7.326 -15.099 -1.646 3.918  0.600  C18 P9F 21 
P9F C17 C16 C  0 1 N N N N N N 8.337  8.339 -14.175 -2.751 4.254  1.604  C17 P9F 22 
P9F C16 C17 C  0 1 N N N N N N 9.558  8.944 -14.862 -2.352 3.746  2.991  C16 P9F 23 
P9F C15 C18 C  0 1 N N N N N N 10.596 7.835 -14.901 -2.153 2.230  2.940  C15 P9F 24 
P9F C14 C19 C  0 1 N N N N N N 10.086 6.719 -15.811 -1.048 1.893  1.936  C14 P9F 25 
P9F H1  H1  H  0 1 N N N N N N 11.610 3.057 -20.637 -4.995 -0.317 0.649  H1  P9F 26 
P9F H2  H2  H  0 1 N N N N N N 13.244 3.800 -20.676 -5.709 -1.490 -0.483 H2  P9F 27 
P9F H3  H3  H  0 1 N N N N N N 9.674  4.245 -21.588 -3.173 -0.961 2.120  H3  P9F 28 
P9F H4  H4  H  0 1 N N N N N N 8.911  6.151 -23.031 -2.067 -2.800 3.327  H4  P9F 29 
P9F H5  H5  H  0 1 N N N N N N 8.321  3.520 -15.006 0.769  0.037  -2.413 H5  P9F 30 
P9F H6  H6  H  0 1 N N N N N N 8.739  5.441 -14.667 -2.377 1.923  0.241  H6  P9F 31 
P9F H7  H7  H  0 1 N N N N N N 8.396  6.177 -17.598 -0.573 2.525  -1.415 H7  P9F 32 
P9F H8  H8  H  0 1 N N N N N N 7.052  5.450 -16.653 0.610  2.447  -0.087 H8  P9F 33 
P9F H9  H9  H  0 1 N N N N N N 13.549 6.111 -21.345 -4.887 -3.771 -0.592 H9  P9F 34 
P9F H10 H10 H  0 1 N N N N N N 12.997 7.304 -17.971 -6.153 0.805  -3.117 H10 P9F 35 
P9F H11 H11 H  0 1 N N N N N N 12.442 3.547 -18.360 -3.572 -1.446 -1.802 H11 P9F 36 
P9F H12 H12 H  0 1 N N N N N N 12.797 7.960 -22.805 -3.784 -5.611 0.618  H12 P9F 37 
P9F H13 H13 H  0 1 N N N N N N 10.473 7.978 -23.630 -2.375 -5.125 2.578  H13 P9F 38 
P9F H14 H14 H  0 1 N N N N N N 9.980  5.031 -19.130 -2.690 0.331  0.341  H14 P9F 39 
P9F H15 H15 H  0 1 N N N N N N 8.160  3.771 -17.954 -0.132 0.079  0.354  H15 P9F 40 
P9F H17 H17 H  0 1 N N N N N N 7.400  7.840 -16.019 -0.717 4.396  0.909  H17 P9F 41 
P9F H18 H18 H  0 1 N N N N N N 6.836  6.892 -14.601 -1.931 4.280  -0.388 H18 P9F 42 
P9F H19 H19 H  0 1 N N N N N N 7.608  9.131 -13.951 -2.892 5.334  1.640  H19 P9F 43 
P9F H20 H20 H  0 1 N N N N N N 8.644  7.848 -13.240 -3.680 3.776  1.295  H20 P9F 44 
P9F H21 H21 H  0 1 N N N N N N 9.935  9.803 -14.288 -1.422 4.224  3.299  H21 P9F 45 
P9F H22 H22 H  0 1 N N N N N N 9.304  9.268 -15.882 -3.139 3.986  3.706  H22 P9F 46 
P9F H23 H23 H  0 1 N N N N N N 10.756 7.441 -13.886 -1.869 1.867  3.928  H23 P9F 47 
P9F H24 H24 H  0 1 N N N N N N 11.544 8.229 -15.295 -3.083 1.751  2.632  H24 P9F 48 
P9F H25 H25 H  0 1 N N N N N N 10.796 5.881 -15.747 -0.907 0.813  1.901  H25 P9F 49 
P9F H26 H26 H  0 1 N N N N N N 10.067 7.106 -16.841 -0.119 2.371  2.245  H26 P9F 50 
P9F O5  O5  O  0 1 N Y N N N N ?      ?     ?       3.202  -0.038 -1.728 O5  P9F 51 
P9F C20 C20 C  0 1 Y Y N N N N ?      ?     ?       4.406  -0.189 -1.115 C20 P9F 52 
P9F C21 C21 C  0 1 Y Y N N N N ?      ?     ?       4.718  -1.383 -0.481 C21 P9F 53 
P9F C22 C22 C  0 1 Y Y N N N N ?      ?     ?       5.942  -1.535 0.141  C22 P9F 54 
P9F C23 C23 C  0 1 Y Y N N N N ?      ?     ?       6.857  -0.497 0.132  C23 P9F 55 
P9F C24 C24 C  0 1 Y Y N N N N ?      ?     ?       6.548  0.695  -0.501 C24 P9F 56 
P9F C25 C25 C  0 1 Y Y N N N N ?      ?     ?       5.327  0.848  -1.128 C25 P9F 57 
P9F CL1 CL1 CL 0 0 N Y N N N N ?      ?     ?       8.394  -0.690 0.915  CL1 P9F 58 
P9F H16 H16 H  0 1 N Y N N N N ?      ?     ?       4.003  -2.193 -0.473 H16 P9F 59 
P9F H27 H27 H  0 1 N Y N N N N ?      ?     ?       6.185  -2.464 0.635  H27 P9F 60 
P9F H28 H28 H  0 1 N Y N N N N ?      ?     ?       7.264  1.503  -0.507 H28 P9F 61 
P9F H29 H29 H  0 1 N Y N N N N ?      ?     ?       5.087  1.778  -1.621 H29 P9F 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
P9F C7  C6  DOUB Y N 1  
P9F C7  C8  SING Y N 2  
P9F C6  C5  SING Y N 3  
P9F C8  C9  DOUB Y N 4  
P9F C5  C4  DOUB Y N 5  
P9F C9  C4  SING Y N 6  
P9F C4  C3  SING N N 7  
P9F C3  C2  SING N N 8  
P9F C2  C1  SING N N 9  
P9F C2  N1  SING N N 10 
P9F O1  C1  DOUB N N 11 
P9F C1  O4  SING N N 12 
P9F N1  C10 SING N N 13 
P9F O2  C19 DOUB N N 14 
P9F C10 C11 SING N N 15 
P9F C10 O3  DOUB N N 16 
P9F C11 C12 SING N N 17 
P9F C11 N2  SING N N 18 
P9F C12 C13 SING N N 19 
P9F C19 N2  SING N N 20 
P9F C14 C13 SING N N 21 
P9F C14 C15 SING N N 22 
P9F C13 C18 SING N N 23 
P9F C18 C17 SING N N 24 
P9F C15 C16 SING N N 25 
P9F C16 C17 SING N N 26 
P9F C3  H1  SING N N 27 
P9F C3  H2  SING N N 28 
P9F C5  H3  SING N N 29 
P9F C6  H4  SING N N 30 
P9F N2  H5  SING N N 31 
P9F C13 H6  SING N N 32 
P9F C12 H7  SING N N 33 
P9F C12 H8  SING N N 34 
P9F C9  H9  SING N N 35 
P9F O4  H10 SING N N 36 
P9F C2  H11 SING N N 37 
P9F C8  H12 SING N N 38 
P9F C7  H13 SING N N 39 
P9F N1  H14 SING N N 40 
P9F C11 H15 SING N N 41 
P9F C18 H17 SING N N 42 
P9F C18 H18 SING N N 43 
P9F C17 H19 SING N N 44 
P9F C17 H20 SING N N 45 
P9F C16 H21 SING N N 46 
P9F C16 H22 SING N N 47 
P9F C15 H23 SING N N 48 
P9F C15 H24 SING N N 49 
P9F C14 H25 SING N N 50 
P9F C14 H26 SING N N 51 
P9F C19 O5  SING N N 52 
P9F O5  C20 SING N N 53 
P9F C20 C21 SING Y N 54 
P9F C21 C22 DOUB Y N 55 
P9F C22 C23 SING Y N 56 
P9F C23 C24 DOUB Y N 57 
P9F C24 C25 SING Y N 58 
P9F C25 C20 DOUB Y N 59 
P9F C23 CL1 SING N N 60 
P9F C21 H16 SING N N 61 
P9F C22 H27 SING N N 62 
P9F C24 H28 SING N N 63 
P9F C25 H29 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
P9F InChI            InChI                1.06    "InChI=1S/C25H29ClN2O5/c26-19-11-13-20(14-12-19)33-25(32)28-21(15-17-7-3-1-4-8-17)23(29)27-22(24(30)31)16-18-9-5-2-6-10-18/h2,5-6,9-14,17,21-22H,1,3-4,7-8,15-16H2,(H,27,29)(H,28,32)(H,30,31)/t21-,22-/m0/s1" 
P9F InChIKey         InChI                1.06    XQAHEQBJBQAMLZ-VXKWHMMOSA-N                                                                                                                                                                                    
P9F SMILES_CANONICAL CACTVS               3.385   "OC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC2CCCCC2)NC(=O)Oc3ccc(Cl)cc3"                                                                                                                                              
P9F SMILES           CACTVS               3.385   "OC(=O)[CH](Cc1ccccc1)NC(=O)[CH](CC2CCCCC2)NC(=O)Oc3ccc(Cl)cc3"                                                                                                                                                
P9F SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C[C@@H](C(=O)O)NC(=O)[C@H](CC2CCCCC2)NC(=O)Oc3ccc(cc3)Cl"                                                                                                                                           
P9F SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CC(C(=O)O)NC(=O)C(CC2CCCCC2)NC(=O)Oc3ccc(cc3)Cl"                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           P9F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[[(2~{S})-2-[(4-chloranylphenoxy)carbonylamino]-3-cyclohexyl-propanoyl]amino]-3-phenyl-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
P9F "Create component" 2022-10-04 PDBE 
P9F "Initial release"  2023-10-04 RCSB 
P9F "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      P9F 
_pdbx_chem_comp_synonyms.name         "(2~{S})-2-[[(2~{S})-2-[(4-chloranylphenoxy)carbonylamino]-3-cyclohexyl-propanoyl]amino]-3-phenyl-propanoic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            P9F 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
