data_PIF
# 
_chem_comp.id                                    PIF 
_chem_comp.name                                  "(2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H48 O16 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "L-ALPHA-D-MYOPHOSPHATIDYLINOSITOL 4-PHOSPHATE; D(+)SN1,2DI-O-OCTANOYLGLYCERYL" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-05-11 
_chem_comp.pdbx_modified_date                    2020-05-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        666.587 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PIF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3MTC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PIF C1   C1   C 0 1 N N N 54.854 9.202  57.126 4.272   1.061   -0.422 C1   PIF 1  
PIF O1   O1   O 0 1 N N N 56.212 9.355  57.521 2.865   0.828   -0.335 O1   PIF 2  
PIF P1   P1   P 0 1 N N N 57.010 8.770  58.791 1.772   1.802   -1.003 P1   PIF 3  
PIF C2   C2   C 0 1 N N R 54.472 7.765  56.774 4.943   -0.123  -1.120 C2   PIF 4  
PIF O2   O2   O 0 1 N N N 55.401 7.188  55.834 4.704   -1.316  -0.371 O2   PIF 5  
PIF C3   C3   C 0 1 N N S 53.022 7.766  56.245 6.450   0.127   -1.214 C3   PIF 6  
PIF O3   O3   O 0 1 N N N 52.647 6.446  55.850 7.077   -0.979  -1.866 O3   PIF 7  
PIF C4   C4   C 0 1 N N N 52.772 8.722  55.070 7.029   0.284   0.194  C4   PIF 8  
PIF O4   O4   O 0 1 N N N 51.373 8.978  54.908 8.436   0.517   0.107  O4   PIF 9  
PIF P4   P4   P 0 1 N N N 50.519 8.296  53.716 9.530   -0.457  0.775  P4   PIF 10 
PIF C5   C5   C 0 1 N N R 53.369 10.105 55.227 6.358   1.468   0.893  C5   PIF 11 
PIF O5   O5   O 0 1 N N N 53.501 10.678 53.906 6.899   1.614   2.207  O5   PIF 12 
PIF C6   C6   C 0 1 N N R 54.728 10.116 55.914 4.851   1.218   0.986  C6   PIF 13 
PIF O6   O6   O 0 1 N N N 54.999 11.460 56.314 4.225   2.324   1.638  O6   PIF 14 
PIF C7   C7   C 0 1 N N N 58.497 6.516  58.648 -0.890  2.028   -0.948 C7   PIF 15 
PIF C8   C8   C 0 1 N N R 59.947 6.873  58.325 -2.115  1.286   -0.409 C8   PIF 16 
PIF C9   C9   C 0 1 N N N 60.897 6.174  59.278 -3.372  2.117   -0.675 C9   PIF 17 
PIF C10  C10  C 0 1 N N N 61.392 3.839  59.892 -5.708  2.077   -0.203 C10  PIF 18 
PIF C11  C11  C 0 1 N N N 62.452 4.104  60.945 -6.943  1.466   0.408  C11  PIF 19 
PIF O11  O11  O 0 1 N N N 58.073 9.810  59.063 1.981   3.185   -0.518 O11  PIF 20 
PIF C12  C12  C 0 1 N N N 63.542 3.026  61.007 -8.154  2.348   0.101  C12  PIF 21 
PIF O12  O12  O 0 1 N N N 56.105 8.329  59.911 1.928   1.766   -2.605 O12  PIF 22 
PIF C13  C13  C 0 1 N N N 64.259 2.989  62.362 -9.408  1.728   0.720  C13  PIF 23 
PIF O13  O13  O 0 1 N N N 57.632 7.470  58.043 0.294   1.309   -0.597 O13  PIF 24 
PIF C14  C14  C 0 1 N N N 65.708 3.481  62.319 -10.619 2.610   0.413  C14  PIF 25 
PIF O14  O14  O 0 1 N N N 60.313 6.477  57.007 -2.235  0.001   -1.074 O14  PIF 26 
PIF C15  C15  C 0 1 N N N 66.201 3.861  63.720 -11.873 1.990   1.033  C15  PIF 27 
PIF O15  O15  O 0 1 N N N 60.429 4.864  59.546 -4.519  1.471   -0.061 O15  PIF 28 
PIF C16  C16  C 0 1 N N N 67.605 4.463  63.700 -13.084 2.872   0.726  C16  PIF 29 
PIF O16  O16  O 0 1 N N N 61.292 2.778  59.295 -5.789  3.113   -0.820 O16  PIF 30 
PIF C17  C17  C 0 1 N N N 67.791 5.524  64.765 -14.337 2.251   1.346  C17  PIF 31 
PIF O17  O17  O 0 1 N N N 61.664 8.359  56.916 -3.175  -0.804  0.757  O17  PIF 32 
PIF C18  C18  C 0 1 N N N 61.371 7.288  56.416 -2.796  -0.997  -0.374 C18  PIF 33 
PIF C19  C19  C 0 1 N N N 62.095 6.797  55.183 -2.953  -2.360  -0.999 C19  PIF 34 
PIF C20  C20  C 0 1 N N N 63.571 6.555  55.510 -3.616  -3.307  0.003  C20  PIF 35 
PIF C21  C21  C 0 1 N N N 63.769 5.463  56.564 -3.775  -4.690  -0.631 C21  PIF 36 
PIF C22  C22  C 0 1 N N N 65.027 4.645  56.272 -4.438  -5.637  0.371  C22  PIF 37 
PIF C23  C23  C 0 1 N N N 65.465 3.760  57.436 -4.597  -7.021  -0.263 C23  PIF 38 
PIF C24  C24  C 0 1 N N N 65.290 2.275  57.139 -5.260  -7.968  0.739  C24  PIF 39 
PIF C25  C25  C 0 1 N N N 66.008 1.430  58.168 -5.420  -9.351  0.105  C25  PIF 40 
PIF O41  O41  O 0 1 N N N 50.843 6.811  53.884 11.007  0.036   0.369  O41  PIF 41 
PIF O42  O42  O 0 1 N N N 49.120 8.732  54.083 9.373   -0.421  2.377  O42  PIF 42 
PIF O43  O43  O 0 1 N N N 51.050 8.956  52.463 9.320   -1.840  0.290  O43  PIF 43 
PIF H1   H1   H 0 1 N N N 54.170 9.458  57.949 4.455   1.972   -0.993 H1   PIF 44 
PIF H2   H2   H 0 1 N N N 54.525 7.130  57.671 4.531   -0.234  -2.123 H2   PIF 45 
PIF HO2  HO2  H 0 1 N N N 55.138 6.297  55.635 5.102   -2.109  -0.757 HO2  PIF 46 
PIF H3   H3   H 0 1 N N N 52.407 8.128  57.082 6.633   1.037   -1.785 H3   PIF 47 
PIF HO3  HO3  H 0 1 N N N 51.754 6.454  55.526 6.758   -1.137  -2.765 HO3  PIF 48 
PIF H4   H4   H 0 1 N N N 53.242 8.197  54.225 6.846   -0.626  0.765  H4   PIF 49 
PIF H5   H5   H 0 1 N N N 52.696 10.687 55.874 6.541   2.378   0.321  H5   PIF 50 
PIF HO5  HO5  H 0 1 N N N 53.874 11.549 53.974 6.518   2.348   2.710  HO5  PIF 51 
PIF H6   H6   H 0 1 N N N 55.453 9.726  55.184 4.669   0.308   1.557  H6   PIF 52 
PIF HO6  HO6  H 0 1 N N N 54.922 12.036 55.563 4.543   2.483   2.537  HO6  PIF 53 
PIF H7   H7   H 0 1 N N N 58.350 6.526  59.738 -0.961  2.105   -2.033 H7   PIF 54 
PIF H7A  H7A  H 0 1 N N N 58.269 5.513  58.257 -0.851  3.027   -0.514 H7A  PIF 55 
PIF H8   H8   H 0 1 N N N 60.021 7.966  58.421 -2.003  1.131   0.664  H8   PIF 56 
PIF H9   H9   H 0 1 N N N 61.896 6.118  58.822 -3.246  3.113   -0.252 H9   PIF 57 
PIF H9A  H9A  H 0 1 N N N 60.953 6.741  60.219 -3.534  2.197   -1.750 H9A  PIF 58 
PIF H11  H11  H 0 1 N N N 62.934 5.064  60.710 -7.102  0.472   -0.012 H11  PIF 59 
PIF H11A H11A H 0 0 N N N 61.956 4.145  61.926 -6.814  1.388   1.487  H11A PIF 60 
PIF H12  H12  H 0 1 N N N 63.072 2.046  60.835 -7.995  3.342   0.520  H12  PIF 61 
PIF H12A H12A H 0 0 N N N 64.286 3.239  60.225 -8.283  2.426   -0.979 H12A PIF 62 
PIF HO12 HO12 H 0 0 N N N 56.334 8.795  60.706 1.803   0.889   -2.992 HO12 PIF 63 
PIF H13  H13  H 0 1 N N N 63.703 3.635  63.057 -9.566  0.734   0.301  H13  PIF 64 
PIF H13A H13A H 0 0 N N N 64.266 1.947  62.713 -9.279  1.650   1.800  H13A PIF 65 
PIF H14  H14  H 0 1 N N N 66.346 2.679  61.921 -10.460 3.604   0.832  H14  PIF 66 
PIF H14A H14A H 0 0 N N N 65.766 4.365  61.668 -10.748 2.688   -0.666 H14A PIF 67 
PIF H15  H15  H 0 1 N N N 65.509 4.603  64.144 -12.031 0.996   0.614  H15  PIF 68 
PIF H15A H15A H 0 0 N N N 66.219 2.954  64.342 -11.744 1.912   2.113  H15A PIF 69 
PIF H16  H16  H 0 1 N N N 68.333 3.658  63.878 -12.925 3.866   1.145  H16  PIF 70 
PIF H16A H16A H 0 0 N N N 67.774 4.923  62.715 -13.213 2.950   -0.354 H16A PIF 71 
PIF H17  H17  H 0 1 N N N 68.814 5.925  64.709 -15.201 2.880   1.127  H17  PIF 72 
PIF H17A H17A H 0 0 N N N 67.069 6.338  64.602 -14.496 1.258   0.927  H17A PIF 73 
PIF H17B H17B H 0 0 N N N 67.625 5.080  65.758 -14.209 2.174   2.425  H17B PIF 74 
PIF H19  H19  H 0 1 N N N 61.638 5.856  54.842 -3.575  -2.281  -1.890 H19  PIF 75 
PIF H19A H19A H 0 0 N N N 62.017 7.554  54.389 -1.972  -2.749  -1.273 H19A PIF 76 
PIF H20  H20  H 0 1 N N N 64.085 6.246  54.588 -2.993  -3.386  0.895  H20  PIF 77 
PIF H20A H20A H 0 0 N N N 64.000 7.492  55.895 -4.596  -2.918  0.278  H20A PIF 78 
PIF H21  H21  H 0 1 N N N 63.870 5.934  57.553 -4.397  -4.611  -1.523 H21  PIF 79 
PIF H21A H21A H 0 0 N N N 62.896 4.794  56.554 -2.795  -5.079  -0.905 H21A PIF 80 
PIF H22  H22  H 0 1 N N N 64.820 3.996  55.408 -3.816  -5.716  1.263  H22  PIF 81 
PIF H22A H22A H 0 0 N N N 65.845 5.345  56.048 -5.418  -5.248  0.646  H22A PIF 82 
PIF H23  H23  H 0 1 N N N 66.529 3.952  57.638 -5.220  -6.942  -1.155 H23  PIF 83 
PIF H23A H23A H 0 0 N N N 64.855 4.014  58.315 -3.617  -7.410  -0.537 H23A PIF 84 
PIF H24  H24  H 0 1 N N N 64.218 2.030  57.160 -4.638  -8.047  1.631  H24  PIF 85 
PIF H24A H24A H 0 0 N N N 65.706 2.058  56.144 -6.240  -7.579  1.013  H24A PIF 86 
PIF H25  H25  H 0 1 N N N 65.867 0.365  57.932 -6.042  -9.272  -0.787 H25  PIF 87 
PIF H25A H25A H 0 0 N N N 67.082 1.669  58.154 -4.439  -9.740  -0.169 H25A PIF 88 
PIF H25B H25B H 0 0 N N N 65.598 1.642  59.167 -5.892  -10.026 0.819  H25B PIF 89 
PIF HO41 HO41 H 0 0 N N N 51.353 6.512  53.141 11.718  -0.506  0.737  HO41 PIF 90 
PIF HO42 HO42 H 0 0 N N N 48.807 9.363  53.445 9.498   0.456   2.764  HO42 PIF 91 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PIF C6  C1   SING N N 1  
PIF C2  C1   SING N N 2  
PIF C1  O1   SING N N 3  
PIF C1  H1   SING N N 4  
PIF O1  P1   SING N N 5  
PIF O13 P1   SING N N 6  
PIF P1  O11  DOUB N N 7  
PIF P1  O12  SING N N 8  
PIF O2  C2   SING N N 9  
PIF C3  C2   SING N N 10 
PIF C2  H2   SING N N 11 
PIF O2  HO2  SING N N 12 
PIF C4  C3   SING N N 13 
PIF O3  C3   SING N N 14 
PIF C3  H3   SING N N 15 
PIF O3  HO3  SING N N 16 
PIF O4  C4   SING N N 17 
PIF C4  C5   SING N N 18 
PIF C4  H4   SING N N 19 
PIF P4  O4   SING N N 20 
PIF O43 P4   DOUB N N 21 
PIF P4  O41  SING N N 22 
PIF P4  O42  SING N N 23 
PIF O5  C5   SING N N 24 
PIF C5  C6   SING N N 25 
PIF C5  H5   SING N N 26 
PIF O5  HO5  SING N N 27 
PIF C6  O6   SING N N 28 
PIF C6  H6   SING N N 29 
PIF O6  HO6  SING N N 30 
PIF O13 C7   SING N N 31 
PIF C8  C7   SING N N 32 
PIF C7  H7   SING N N 33 
PIF C7  H7A  SING N N 34 
PIF O14 C8   SING N N 35 
PIF C8  C9   SING N N 36 
PIF C8  H8   SING N N 37 
PIF C9  O15  SING N N 38 
PIF C9  H9   SING N N 39 
PIF C9  H9A  SING N N 40 
PIF O16 C10  DOUB N N 41 
PIF O15 C10  SING N N 42 
PIF C10 C11  SING N N 43 
PIF C11 C12  SING N N 44 
PIF C11 H11  SING N N 45 
PIF C11 H11A SING N N 46 
PIF C12 C13  SING N N 47 
PIF C12 H12  SING N N 48 
PIF C12 H12A SING N N 49 
PIF O12 HO12 SING N N 50 
PIF C14 C13  SING N N 51 
PIF C13 H13  SING N N 52 
PIF C13 H13A SING N N 53 
PIF C14 C15  SING N N 54 
PIF C14 H14  SING N N 55 
PIF C14 H14A SING N N 56 
PIF C18 O14  SING N N 57 
PIF C16 C15  SING N N 58 
PIF C15 H15  SING N N 59 
PIF C15 H15A SING N N 60 
PIF C16 C17  SING N N 61 
PIF C16 H16  SING N N 62 
PIF C16 H16A SING N N 63 
PIF C17 H17  SING N N 64 
PIF C17 H17A SING N N 65 
PIF C17 H17B SING N N 66 
PIF C18 O17  DOUB N N 67 
PIF C19 C18  SING N N 68 
PIF C19 C20  SING N N 69 
PIF C19 H19  SING N N 70 
PIF C19 H19A SING N N 71 
PIF C20 C21  SING N N 72 
PIF C20 H20  SING N N 73 
PIF C20 H20A SING N N 74 
PIF C22 C21  SING N N 75 
PIF C21 H21  SING N N 76 
PIF C21 H21A SING N N 77 
PIF C22 C23  SING N N 78 
PIF C22 H22  SING N N 79 
PIF C22 H22A SING N N 80 
PIF C24 C23  SING N N 81 
PIF C23 H23  SING N N 82 
PIF C23 H23A SING N N 83 
PIF C24 C25  SING N N 84 
PIF C24 H24  SING N N 85 
PIF C24 H24A SING N N 86 
PIF C25 H25  SING N N 87 
PIF C25 H25A SING N N 88 
PIF C25 H25B SING N N 89 
PIF O41 HO41 SING N N 90 
PIF O42 HO42 SING N N 91 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PIF SMILES           ACDLabs              12.01 "O=C(OCC(OC(=O)CCCCCCC)COP(=O)(O)OC1C(O)C(O)C(OP(=O)(O)O)C(O)C1O)CCCCCCC"                                                                                                                                                                  
PIF SMILES_CANONICAL CACTVS               3.370 "CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](O[P](O)(O)=O)[C@H](O)[C@H]1O)OC(=O)CCCCCCC"                                                                                                                                
PIF SMILES           CACTVS               3.370 "CCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O[P](O)(O)=O)[CH](O)[CH]1O)OC(=O)CCCCCCC"                                                                                                                                         
PIF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CCCCCCCC(=O)OC[C@H](CO[P@](=O)(O)OC1[C@@H]([C@H](C([C@H]([C@H]1O)O)OP(=O)(O)O)O)O)OC(=O)CCCCCCC"                                                                                                                                          
PIF SMILES           "OpenEye OEToolkits" 1.7.0 "CCCCCCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)O)OP(=O)(O)O)O)O)OC(=O)CCCCCCC"                                                                                                                                                                  
PIF InChI            InChI                1.03  "InChI=1S/C25H48O16P2/c1-3-5-7-9-11-13-18(26)37-15-17(39-19(27)14-12-10-8-6-4-2)16-38-43(35,36)41-25-22(30)20(28)24(21(29)23(25)31)40-42(32,33)34/h17,20-25,28-31H,3-16H2,1-2H3,(H,35,36)(H2,32,33,34)/t17-,20-,21+,22-,23-,24+,25+/m1/s1" 
PIF InChIKey         InChI                1.03  SNIQYSSXZJPPEL-LKTRINTESA-N                                                                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PIF "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate" 
PIF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R)-3-[hydroxy-[(2R,3R,5S,6R)-2,3,5,6-tetrahydroxy-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-2-octanoyloxy-propyl] octanoate"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PIF "Create component"  2010-05-11 RCSB 
PIF "Modify descriptor" 2011-06-04 RCSB 
PIF "Modify synonyms"   2020-05-27 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 PIF "L-ALPHA-D-MYOPHOSPHATIDYLINOSITOL 4-PHOSPHATE" ? ? 
2 PIF "D(+)SN1,2DI-O-OCTANOYLGLYCERYL"                ? ? 
# 
