data_R4F
# 
_chem_comp.id                                    R4F 
_chem_comp.name                                  " 1-(2-methylprop-2-enoyl)-1H-indole-3-carbaldehyde, bound form" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H13 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        215.248 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R4F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DC6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R4F C13 C1  C 0 1 Y N N N N N -4.346 17.257 -7.082  -3.287 -1.754 0.084  C13 R4F 1  
R4F C15 C2  C 0 1 Y N N N N N -3.237 17.151 -9.220  -0.926 -2.189 0.038  C15 R4F 2  
R4F O01 O1  O 0 1 N N N N N N -2.555 16.533 -12.056 1.896  -1.795 -0.045 O01 R4F 3  
R4F C02 C3  C 0 1 N N N N N N -3.584 15.891 -12.154 1.740  -0.597 -0.078 C02 R4F 4  
R4F C03 C4  C 0 1 N N N N N N -3.938 15.191 -13.461 2.937  0.317  -0.136 C03 R4F 5  
R4F C04 C5  C 0 1 N N N N N N -3.404 13.764 -13.462 3.378  0.671  1.286  C04 R4F 6  
R4F C05 C6  C 0 1 N N N N N N -3.406 15.944 -14.684 4.082  -0.387 -0.865 C05 R4F 7  
R4F N06 N1  N 0 1 Y N N N N N -4.461 15.793 -10.983 0.496  -0.079 -0.062 N06 R4F 8  
R4F C07 C7  C 0 1 Y N N N N N -5.704 15.067 -10.950 0.206  1.250  -0.097 C07 R4F 9  
R4F C08 C8  C 0 1 Y N N N N N -6.278 15.183 -9.680  -1.147 1.426  -0.059 C08 R4F 10 
R4F C09 C9  C 0 1 N N N N N N -7.562 14.565 -9.286  -1.863 2.701  -0.078 C09 R4F 11 
R4F O10 O2  O 0 1 N N N N N N -7.713 13.980 -8.223  -1.244 3.744  -0.132 O10 R4F 12 
R4F C11 C10 C 0 1 Y N N N N N -5.380 16.006 -8.877  -1.747 0.077  -0.006 C11 R4F 13 
R4F C12 C11 C 0 1 Y N N N N N -5.394 16.471 -7.556  -3.054 -0.396 0.041  C12 R4F 14 
R4F C14 C12 C 0 1 Y N N N N N -3.270 17.595 -7.913  -2.226 -2.646 0.085  C14 R4F 15 
R4F C16 C13 C 0 1 Y N N N N N -4.291 16.359 -9.694  -0.672 -0.824 -0.010 C16 R4F 16 
R4F H1  H1  H 0 1 N N N N N N -4.363 17.610 -6.061  -4.301 -2.125 0.121  H1  R4F 17 
R4F H2  H2  H 0 1 N N N N N N -2.412 17.410 -9.867  -0.105 -2.891 0.040  H2  R4F 18 
R4F H3  H3  H 0 1 N N N N N N -5.034 15.146 -13.539 2.671  1.229  -0.671 H3  R4F 19 
R4F H4  H4  H 0 1 N N N N N N -3.789 13.227 -12.582 3.643  -0.240 1.821  H4  R4F 20 
R4F H5  H5  H 0 1 N N N N N N -3.733 13.250 -14.377 4.243  1.333  1.244  H5  R4F 21 
R4F H6  H6  H 0 1 N N N N N N -2.305 13.784 -13.428 2.561  1.173  1.805  H6  R4F 22 
R4F H7  H7  H 0 1 N N N N N N -3.794 16.973 -14.679 3.768  -0.639 -1.878 H7  R4F 23 
R4F H8  H8  H 0 1 N N N N N N -2.307 15.967 -14.651 4.948  0.274  -0.907 H8  R4F 24 
R4F H9  H9  H 0 1 N N N N N N -3.735 15.433 -15.601 4.348  -1.299 -0.329 H9  R4F 25 
R4F H10 H10 H 0 1 N N N N N N -6.128 14.518 -11.778 0.936  2.045  -0.139 H10 R4F 26 
R4F H11 H11 H 0 1 N N N N N N -8.400 14.633 -9.964  -2.942 2.714  -0.044 H11 R4F 27 
R4F H12 H12 H 0 1 N N N N N N -6.218 16.220 -6.904  -3.882 0.298  0.044  H12 R4F 28 
R4F H13 H13 H 0 1 N N N N N N -2.464 18.204 -7.530  -2.419 -3.708 0.123  H13 R4F 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R4F C05 C03 SING N N 1  
R4F C04 C03 SING N N 2  
R4F C03 C02 SING N N 3  
R4F C02 O01 DOUB N N 4  
R4F C02 N06 SING N N 5  
R4F N06 C07 SING Y N 6  
R4F N06 C16 SING Y N 7  
R4F C07 C08 DOUB Y N 8  
R4F C16 C15 DOUB Y N 9  
R4F C16 C11 SING Y N 10 
R4F C08 C09 SING N N 11 
R4F C08 C11 SING Y N 12 
R4F C09 O10 DOUB N N 13 
R4F C15 C14 SING Y N 14 
R4F C11 C12 DOUB Y N 15 
R4F C14 C13 DOUB Y N 16 
R4F C12 C13 SING Y N 17 
R4F C13 H1  SING N N 18 
R4F C15 H2  SING N N 19 
R4F C03 H3  SING N N 20 
R4F C04 H4  SING N N 21 
R4F C04 H5  SING N N 22 
R4F C04 H6  SING N N 23 
R4F C05 H7  SING N N 24 
R4F C05 H8  SING N N 25 
R4F C05 H9  SING N N 26 
R4F C07 H10 SING N N 27 
R4F C09 H11 SING N N 28 
R4F C12 H12 SING N N 29 
R4F C14 H13 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R4F SMILES           ACDLabs              12.01 "CC(C)C(=O)n1cc(C=O)c2ccccc21"                                                 
R4F InChI            InChI                1.03  "InChI=1S/C13H13NO2/c1-9(2)13(16)14-7-10(8-15)11-5-3-4-6-12(11)14/h3-9H,1-2H3" 
R4F InChIKey         InChI                1.03  GAZDTEOBGBWWLL-UHFFFAOYSA-N                                                    
R4F SMILES_CANONICAL CACTVS               3.385 "CC(C)C(=O)n1cc(C=O)c2ccccc12"                                                 
R4F SMILES           CACTVS               3.385 "CC(C)C(=O)n1cc(C=O)c2ccccc12"                                                 
R4F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C(=O)n1cc(c2c1cccc2)C=O"                                                 
R4F SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(=O)n1cc(c2c1cccc2)C=O"                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
R4F "SYSTEMATIC NAME" ACDLabs              12.01 "1-(2-methylpropanoyl)-1H-indole-3-carbaldehyde" 
R4F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-(2-methylpropanoyl)indole-3-carbaldehyde"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R4F "Create component" 2022-06-16 RCSB 
R4F "Modify name"      2022-06-16 RCSB 
R4F "Initial release"  2022-10-12 RCSB 
R4F "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            R4F 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C05 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
