data_RGF
# 
_chem_comp.id                                    RGF 
_chem_comp.name                                  "(8S)-6-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-6-azaspiro[3.4]octane-8-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H17 F N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-22 
_chem_comp.pdbx_modified_date                    2022-07-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        340.352 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RGF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SRU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RGF C18  C1  C 0 1 Y N N -44.265 -29.308 6.111  -0.450 3.464  0.384  C18  RGF 1  
RGF C16  C2  C 0 1 Y N N -46.502 -29.220 6.186  -2.333 2.150  0.201  C16  RGF 2  
RGF C13  C3  C 0 1 Y N N -48.983 -28.912 3.484  -2.180 -1.509 -0.204 C13  RGF 3  
RGF C12  C4  C 0 1 Y N N -50.353 -28.867 3.658  -3.254 -2.365 -0.317 C12  RGF 4  
RGF C11  C5  C 0 1 Y N N -50.895 -28.947 4.941  -4.550 -1.870 -0.277 C11  RGF 5  
RGF C10  C6  C 0 1 Y N N -50.088 -29.068 6.059  -4.779 -0.517 -0.124 C10  RGF 6  
RGF C20  C7  C 0 1 N N N -43.907 -28.480 2.025  1.618  0.016  1.231  C20  RGF 7  
RGF C02  C8  C 0 1 N N N -46.469 -27.548 -0.552 4.161  -0.029 -1.197 C02  RGF 8  
RGF C03  C9  C 0 1 N N S -45.625 -28.409 0.414  2.860  -0.660 -0.771 C03  RGF 9  
RGF C04  C10 C 0 1 N N N -46.302 -28.594 1.778  1.674  0.274  -1.104 C04  RGF 10 
RGF C06  C11 C 0 1 Y N N -45.396 -29.094 4.063  -0.118 1.196  0.135  C06  RGF 11 
RGF C07  C12 C 0 1 Y N N -46.657 -29.111 4.764  -1.507 1.020  0.097  C07  RGF 12 
RGF C08  C13 C 0 1 Y N N -48.108 -29.028 4.566  -2.398 -0.141 -0.049 C08  RGF 13 
RGF C09  C14 C 0 1 Y N N -48.718 -29.095 5.850  -3.708 0.361  -0.008 C09  RGF 14 
RGF C21  C15 C 0 1 N N N -44.333 -27.728 0.780  2.815  -0.816 0.753  C21  RGF 15 
RGF C22  C16 C 0 1 N N N -43.176 -27.569 -0.271 2.868  -2.253 1.272  C22  RGF 16 
RGF C23  C17 C 0 1 N N N -42.920 -26.135 0.280  4.394  -2.070 1.367  C23  RGF 17 
RGF C24  C18 C 0 1 N N N -44.349 -26.158 0.851  4.132  -0.558 1.484  C24  RGF 18 
RGF F14  F1  F 0 1 N N N -52.191 -28.914 5.099  -5.596 -2.719 -0.389 F14  RGF 19 
RGF N05  N1  N 0 1 N N N -45.159 -29.039 2.633  0.735  0.111  0.036  N05  RGF 20 
RGF N15  N2  N 0 1 Y N N -47.742 -29.219 6.825  -3.641 1.738  0.128  N15  RGF 21 
RGF N17  N3  N 0 1 Y N N -45.356 -29.326 6.881  -1.760 3.345  0.342  N17  RGF 22 
RGF N19  N4  N 0 1 Y N N -44.224 -29.206 4.772  0.361  2.428  0.284  N19  RGF 23 
RGF O01  O1  O 0 1 N N N -47.350 -26.767 -0.081 5.190  -0.803 -1.575 O01  RGF 24 
RGF O25  O2  O 0 1 N N N -46.204 -27.643 -1.785 4.277  1.174  -1.197 O25  RGF 25 
RGF H181 H1  H 0 0 N N N -43.315 -29.383 6.619  -0.022 4.449  0.499  H181 RGF 26 
RGF H131 H2  H 0 0 N N N -48.578 -28.856 2.484  -1.173 -1.896 -0.235 H131 RGF 27 
RGF H121 H3  H 0 0 N N N -51.004 -28.770 2.801  -3.086 -3.425 -0.437 H121 RGF 28 
RGF H101 H4  H 0 0 N N N -50.508 -29.138 7.052  -5.791 -0.141 -0.095 H101 RGF 29 
RGF H202 H5  H 0 0 N N N -43.217 -29.294 1.760  1.102  -0.491 2.046  H202 RGF 30 
RGF H201 H6  H 0 0 N N N -43.413 -27.797 2.732  1.942  1.009  1.544  H201 RGF 31 
RGF H031 H7  H 0 0 N N N -45.424 -29.390 -0.041 2.732  -1.628 -1.257 H031 RGF 32 
RGF H041 H8  H 0 0 N N N -46.730 -27.649 2.143  2.012  1.308  -1.173 H041 RGF 33 
RGF H042 H9  H 0 0 N N N -47.090 -29.360 1.733  1.197  -0.034 -2.035 H042 RGF 34 
RGF H222 H10 H 0 0 N N N -43.507 -27.600 -1.319 2.383  -2.386 2.239  H222 RGF 35 
RGF H221 H11 H 0 0 N N N -42.336 -28.266 -0.131 2.561  -2.995 0.536  H221 RGF 36 
RGF H232 H12 H 0 0 N N N -42.126 -26.072 1.039  4.831  -2.508 2.264  H232 RGF 37 
RGF H231 H13 H 0 0 N N N -42.749 -25.372 -0.494 4.924  -2.352 0.457  H231 RGF 38 
RGF H241 H14 H 0 0 N N N -44.435 -25.753 1.870  4.834  0.053  0.917  H241 RGF 39 
RGF H242 H15 H 0 0 N N N -45.102 -25.684 0.204  4.003  -0.214 2.510  H242 RGF 40 
RGF H151 H16 H 0 0 N N N -47.898 -29.294 7.810  -4.411 2.328  0.175  H151 RGF 41 
RGF H1   H17 H 0 1 N N N -47.759 -26.285 -0.791 6.004  -0.352 -1.839 H1   RGF 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RGF O25 C02  DOUB N N 1  
RGF C02 O01  SING N N 2  
RGF C02 C03  SING N N 3  
RGF C22 C23  SING N N 4  
RGF C22 C21  SING N N 5  
RGF C23 C24  SING N N 6  
RGF C03 C21  SING N N 7  
RGF C03 C04  SING N N 8  
RGF C21 C24  SING N N 9  
RGF C21 C20  SING N N 10 
RGF C04 N05  SING N N 11 
RGF C20 N05  SING N N 12 
RGF N05 C06  SING N N 13 
RGF C13 C12  DOUB Y N 14 
RGF C13 C08  SING Y N 15 
RGF C12 C11  SING Y N 16 
RGF C06 C07  DOUB Y N 17 
RGF C06 N19  SING Y N 18 
RGF C08 C07  SING Y N 19 
RGF C08 C09  DOUB Y N 20 
RGF C07 C16  SING Y N 21 
RGF N19 C18  DOUB Y N 22 
RGF C11 F14  SING N N 23 
RGF C11 C10  DOUB Y N 24 
RGF C09 C10  SING Y N 25 
RGF C09 N15  SING Y N 26 
RGF C18 N17  SING Y N 27 
RGF C16 N15  SING Y N 28 
RGF C16 N17  DOUB Y N 29 
RGF C18 H181 SING N N 30 
RGF C13 H131 SING N N 31 
RGF C12 H121 SING N N 32 
RGF C10 H101 SING N N 33 
RGF C20 H202 SING N N 34 
RGF C20 H201 SING N N 35 
RGF C03 H031 SING N N 36 
RGF C04 H041 SING N N 37 
RGF C04 H042 SING N N 38 
RGF C22 H222 SING N N 39 
RGF C22 H221 SING N N 40 
RGF C23 H232 SING N N 41 
RGF C23 H231 SING N N 42 
RGF C24 H241 SING N N 43 
RGF C24 H242 SING N N 44 
RGF N15 H151 SING N N 45 
RGF O01 H1   SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RGF SMILES           ACDLabs              12.01 "O=C(O)C1CN(CC21CCC2)c1ncnc2[NH]c3cc(F)ccc3c12"                                                                                                                    
RGF InChI            InChI                1.06  "InChI=1S/C18H17FN4O2/c19-10-2-3-11-13(6-10)22-15-14(11)16(21-9-20-15)23-7-12(17(24)25)18(8-23)4-1-5-18/h2-3,6,9,12H,1,4-5,7-8H2,(H,24,25)(H,20,21,22)/t12-/m0/s1" 
RGF InChIKey         InChI                1.06  RJMONMRVOQBIPJ-LBPRGKRZSA-N                                                                                                                                        
RGF SMILES_CANONICAL CACTVS               3.385 "OC(=O)[C@@H]1CN(CC12CCC2)c3ncnc4[nH]c5cc(F)ccc5c34"                                                                                                               
RGF SMILES           CACTVS               3.385 "OC(=O)[CH]1CN(CC12CCC2)c3ncnc4[nH]c5cc(F)ccc5c34"                                                                                                                 
RGF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4C[C@H](C5(C4)CCC5)C(=O)O"                                                                                                            
RGF SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4CC(C5(C4)CCC5)C(=O)O"                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RGF "SYSTEMATIC NAME" ACDLabs              12.01 "(8S)-6-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-6-azaspiro[3.4]octane-8-carboxylic acid"          
RGF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(8~{S})-6-(7-fluoranyl-9~{H}-pyrimido[4,5-b]indol-4-yl)-6-azaspiro[3.4]octane-8-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RGF "Create component" 2022-06-22 RCSB 
RGF "Initial release"  2022-07-06 RCSB 
# 
