data_RMF
# 
_chem_comp.id                                    RMF 
_chem_comp.name                                  "~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H20 Cl2 N10 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-05 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        499.356 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RMF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BU5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RMF C4   C1  C  0 1 Y N N -60.683 23.781 -6.719  3.288  -0.823 -0.010 C4   RMF 1  
RMF C5   C2  C  0 1 Y N N -61.937 23.369 -6.347  1.898  -1.018 -0.034 C5   RMF 2  
RMF C6   C3  C  0 1 Y N N -62.031 23.717 -8.468  2.826  -2.967 -0.250 C6   RMF 3  
RMF C7   C4  C  0 1 Y N N -59.773 24.404 -9.016  5.225  -2.365 -0.185 C7   RMF 4  
RMF C8   C5  C  0 1 Y N N -59.917 24.277 -10.398 6.188  -1.733 -0.986 C8   RMF 5  
RMF C10  C6  C  0 1 N N N -56.731 25.759 -10.401 8.219  -4.128 0.797  C10  RMF 6  
RMF C1   C7  C  0 1 N N N -63.473 21.884 -3.303  -1.166 1.157  0.203  C1   RMF 7  
RMF C2   C8  C  0 1 Y N N -62.148 23.081 -4.988  1.064  0.108  0.090  C2   RMF 8  
RMF C3   C9  C  0 1 Y N N -59.898 23.609 -4.590  2.947  1.442  0.242  C3   RMF 9  
RMF C9   C10 C  0 1 Y N N -58.552 24.990 -8.818  5.858  -3.308 0.558  C9   RMF 10 
RMF O1   O1  O  0 1 N N N -56.726 23.273 -2.043  3.962  5.375  -0.367 O1   RMF 11 
RMF C11  C11 C  0 1 N N N -59.107 23.328 -2.311  4.392  3.026  -0.730 C11  RMF 12 
RMF C12  C12 C  0 1 N N N -57.951 23.561 -1.402  5.008  4.409  -0.503 C12  RMF 13 
RMF C13  C13 C  0 1 N N N -56.566 24.275 -3.026  3.060  5.099  0.708  C13  RMF 14 
RMF C14  C14 C  0 1 N N N -57.565 24.137 -4.123  2.424  3.723  0.493  C14  RMF 15 
RMF C15  C15 C  0 1 Y N N -63.430 22.781 -2.112  -2.613 0.741  0.154  C15  RMF 16 
RMF C16  C16 C  0 1 Y N N -62.775 23.639 -0.197  -4.643 0.139  0.783  C16  RMF 17 
RMF C17  C17 C  0 1 Y N N -63.842 24.367 -0.727  -4.569 0.191  -0.619 C17  RMF 18 
RMF C18  C18 C  0 1 Y N N -62.181 23.984 1.011   -5.833 -0.218 1.401  C18  RMF 19 
RMF C19  C19 C  0 1 Y N N -62.686 25.082 1.680   -6.940 -0.521 0.637  C19  RMF 20 
RMF C20  C20 C  0 1 Y N N -63.759 25.817 1.156   -6.872 -0.471 -0.751 C20  RMF 21 
RMF C21  C21 C  0 1 Y N N -64.339 25.469 -0.037  -5.700 -0.119 -1.380 C21  RMF 22 
RMF N1   N1  N  0 1 N N N -63.334 22.647 -4.528  -0.312 -0.027 0.073  N1   RMF 23 
RMF N10  N2  N  0 1 Y N N -64.234 23.808 -1.940  -3.302 0.563  -0.935 N10  RMF 24 
RMF N2   N3  N  0 1 Y N N -61.104 23.197 -4.137  1.628  1.303  0.224  N2   RMF 25 
RMF N3   N4  N  0 1 Y N N -59.645 23.908 -5.882  3.767  0.410  0.129  N3   RMF 26 
RMF N4   N5  N  0 1 Y N N -62.769 23.343 -7.458  1.683  -2.348 -0.183 N4   RMF 27 
RMF N5   N6  N  0 1 Y N N -60.747 23.989 -8.086  3.849  -2.068 -0.153 N5   RMF 28 
RMF N6   N7  N  0 1 N N N -58.896 23.717 -3.700  3.485  2.711  0.383  N6   RMF 29 
RMF N7   N8  N  0 1 Y N N -58.853 24.737 -11.048 7.351  -2.277 -0.733 N7   RMF 30 
RMF N8   N9  N  0 1 Y N N -58.019 25.173 -10.052 7.170  -3.275 0.232  N8   RMF 31 
RMF N9   N10 N  0 1 Y N N -62.535 22.635 -1.114  -3.389 0.490  1.243  N9   RMF 32 
RMF CL1  CL1 CL 0 0 N N N -61.968 25.537 3.188   -8.428 -0.967 1.411  CL1  RMF 33 
RMF CL2  CL2 CL 0 0 N N N -64.387 27.194 1.992   -8.276 -0.856 -1.697 CL2  RMF 34 
RMF H61  H1  H  0 1 N N N -62.391 23.801 -9.483  2.947  -4.034 -0.365 H61  RMF 35 
RMF H81  H2  H  0 1 N N N -60.787 23.856 -10.881 6.002  -0.936 -1.691 H81  RMF 36 
RMF H103 H3  H  0 0 N N N -56.614 25.763 -11.495 8.640  -3.648 1.681  H103 RMF 37 
RMF H101 H4  H  0 0 N N N -56.683 26.791 -10.023 7.793  -5.092 1.074  H101 RMF 38 
RMF H102 H5  H  0 0 N N N -55.923 25.165 -9.948  9.004  -4.277 0.056  H102 RMF 39 
RMF H11  H6  H  0 1 N N N -64.435 21.350 -3.318  -0.958 1.846  -0.616 H11  RMF 40 
RMF H12  H7  H  0 1 N N N -62.651 21.156 -3.236  -0.961 1.650  1.153  H12  RMF 41 
RMF H92  H8  H  0 1 N N N -58.104 25.253 -7.871  5.397  -3.966 1.280  H92  RMF 42 
RMF H112 H9  H  0 0 N N N -59.964 23.900 -1.924  3.834  3.025  -1.666 H112 RMF 43 
RMF H111 H10 H  0 0 N N N -59.344 22.254 -2.291  5.184  2.279  -0.778 H111 RMF 44 
RMF H122 H11 H  0 0 N N N -57.951 24.615 -1.086  5.637  4.671  -1.354 H122 RMF 45 
RMF H121 H12 H  0 0 N N N -58.054 22.913 -0.519  5.610  4.395  0.405  H121 RMF 46 
RMF H132 H13 H  0 0 N N N -55.555 24.197 -3.453  3.605  5.105  1.651  H132 RMF 47 
RMF H131 H14 H  0 0 N N N -56.690 25.261 -2.553  2.280  5.861  0.734  H131 RMF 48 
RMF H141 H15 H  0 0 N N N -57.185 23.393 -4.838  1.780  3.484  1.339  H141 RMF 49 
RMF H142 H16 H  0 0 N N N -57.659 25.112 -4.623  1.834  3.733  -0.423 H142 RMF 50 
RMF H181 H17 H  0 0 N N N -61.355 23.415 1.412   -5.892 -0.258 2.479  H181 RMF 51 
RMF H211 H18 H  0 0 N N N -65.166 26.039 -0.434  -5.653 -0.082 -2.459 H211 RMF 52 
RMF H13  H19 H  0 1 N N N -63.900 23.463 -4.410  -0.713 -0.905 -0.025 H13  RMF 53 
RMF H91  H21 H  0 1 N N N -61.828 21.930 -1.050  -3.113 0.547  2.171  H91  RMF 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RMF N7  C8   DOUB Y N 1  
RMF N7  N8   SING Y N 2  
RMF C10 N8   SING N N 3  
RMF C8  C7   SING Y N 4  
RMF N8  C9   SING Y N 5  
RMF C7  C9   DOUB Y N 6  
RMF C7  N5   SING N N 7  
RMF C6  N5   SING Y N 8  
RMF C6  N4   DOUB Y N 9  
RMF N5  C4   SING Y N 10 
RMF N4  C5   SING Y N 11 
RMF C4  C5   DOUB Y N 12 
RMF C4  N3   SING Y N 13 
RMF C5  C2   SING Y N 14 
RMF N3  C3   DOUB Y N 15 
RMF C2  N1   SING N N 16 
RMF C2  N2   DOUB Y N 17 
RMF C3  N2   SING Y N 18 
RMF C3  N6   SING N N 19 
RMF N1  C1   SING N N 20 
RMF C14 N6   SING N N 21 
RMF C14 C13  SING N N 22 
RMF N6  C11  SING N N 23 
RMF C1  C15  SING N N 24 
RMF C13 O1   SING N N 25 
RMF C11 C12  SING N N 26 
RMF C15 N10  DOUB Y N 27 
RMF C15 N9   SING Y N 28 
RMF O1  C12  SING N N 29 
RMF N10 C17  SING Y N 30 
RMF N9  C16  SING Y N 31 
RMF C17 C16  DOUB Y N 32 
RMF C17 C21  SING Y N 33 
RMF C16 C18  SING Y N 34 
RMF C21 C20  DOUB Y N 35 
RMF C18 C19  DOUB Y N 36 
RMF C20 C19  SING Y N 37 
RMF C20 CL2  SING N N 38 
RMF C19 CL1  SING N N 39 
RMF C6  H61  SING N N 40 
RMF C8  H81  SING N N 41 
RMF C10 H103 SING N N 42 
RMF C10 H101 SING N N 43 
RMF C10 H102 SING N N 44 
RMF C1  H11  SING N N 45 
RMF C1  H12  SING N N 46 
RMF C9  H92  SING N N 47 
RMF C11 H112 SING N N 48 
RMF C11 H111 SING N N 49 
RMF C12 H122 SING N N 50 
RMF C12 H121 SING N N 51 
RMF C13 H132 SING N N 52 
RMF C13 H131 SING N N 53 
RMF C14 H141 SING N N 54 
RMF C14 H142 SING N N 55 
RMF C18 H181 SING N N 56 
RMF C21 H211 SING N N 57 
RMF N1  H13  SING N N 58 
RMF N9  H91  SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RMF InChI            InChI                1.06    "InChI=1S/C21H20Cl2N10O/c1-31-10-12(8-26-31)33-11-25-18-19(29-21(30-20(18)33)32-2-4-34-5-3-32)24-9-17-27-15-6-13(22)14(23)7-16(15)28-17/h6-8,10-11H,2-5,9H2,1H3,(H,27,28)(H,24,29,30)" 
RMF InChIKey         InChI                1.06    FSELUFUYNUNZKD-UHFFFAOYSA-N                                                                                                                                                            
RMF SMILES_CANONICAL CACTVS               3.385   "Cn1cc(cn1)n2cnc3c(NCc4[nH]c5cc(Cl)c(Cl)cc5n4)nc(nc23)N6CCOCC6"                                                                                                                        
RMF SMILES           CACTVS               3.385   "Cn1cc(cn1)n2cnc3c(NCc4[nH]c5cc(Cl)c(Cl)cc5n4)nc(nc23)N6CCOCC6"                                                                                                                        
RMF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cn1cc(cn1)n2cnc3c2nc(nc3NCc4[nH]c5cc(c(cc5n4)Cl)Cl)N6CCOCC6"                                                                                                                          
RMF SMILES           "OpenEye OEToolkits" 3.1.0.0 "Cn1cc(cn1)n2cnc3c2nc(nc3NCc4[nH]c5cc(c(cc5n4)Cl)Cl)N6CCOCC6"                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           RMF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RMF "Create component" 2022-12-05 PDBE 
RMF "Initial release"  2023-09-13 RCSB 
# 
