data_RNF
# 
_chem_comp.id                                    RNF 
_chem_comp.name                                  "(2~{R})-2-[[6-[(4-phenylphenyl)methylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H30 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-05 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        430.545 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RNF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BUN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RNF N1   N1  N 0 1 N N N -63.878 22.328 -5.269  0.008  0.349  0.094  N1   RNF 1  
RNF C2   C1  C 0 1 Y N N -62.971 23.018 -5.979  -1.375 0.339  0.107  C2   RNF 2  
RNF N3   N2  N 0 1 Y N N -61.057 24.435 -7.426  -4.094 0.280  0.123  N3   RNF 3  
RNF C4   C2  C 0 1 Y N N -62.196 24.000 -7.965  -3.506 1.469  0.047  C4   RNF 4  
RNF C5   C3  C 0 1 Y N N -63.193 23.306 -7.330  -2.102 1.539  0.037  C5   RNF 5  
RNF C6   C4  C 0 1 Y N N -63.827 23.557 -9.332  -2.850 3.572  -0.085 C6   RNF 6  
RNF C7   C5  C 0 1 N N N -61.870 24.841 -10.338 -5.348 3.202  -0.058 C7   RNF 7  
RNF C8   C6  C 0 1 N N N -60.566 24.105 -10.652 -5.616 4.115  1.141  C8   RNF 8  
RNF C9   C7  C 0 1 N N N -61.616 26.285 -9.977  -5.621 3.968  -1.353 C9   RNF 9  
RNF C11  C8  C 0 1 N N N -58.597 22.588 -4.752  -4.084 -4.370 1.031  C11  RNF 10 
RNF C14  C9  C 0 1 Y N N -64.092 22.623 -2.834  2.230  -0.627 0.126  C14  RNF 11 
RNF C15  C10 C 0 1 Y N N -63.191 23.301 -2.036  2.892  -0.576 -1.087 C15  RNF 12 
RNF C16  C11 C 0 1 Y N N -63.635 24.104 -1.003  4.248  -0.320 -1.127 C16  RNF 13 
RNF O1   O1  O 0 1 N N N -59.197 22.902 -3.459  -5.213 -4.683 0.213  O1   RNF 14 
RNF C1   C12 C 0 1 N N N -63.615 21.752 -3.967  0.751  -0.912 0.163  C1   RNF 15 
RNF C10  C13 C 0 1 N N R -58.507 23.845 -5.612  -3.245 -3.286 0.350  C10  RNF 16 
RNF C12  C14 C 0 1 N N N -58.224 23.548 -7.079  -2.869 -3.743 -1.060 C12  RNF 17 
RNF C13  C15 C 0 1 N N N -56.941 22.793 -7.282  -1.929 -2.716 -1.695 C13  RNF 18 
RNF C17  C16 C 0 1 Y N N -64.991 24.279 -0.757  4.950  -0.114 0.059  C17  RNF 19 
RNF C18  C17 C 0 1 Y N N -65.882 23.620 -1.592  4.278  -0.166 1.279  C18  RNF 20 
RNF C19  C18 C 0 1 Y N N -65.443 22.813 -2.623  2.922  -0.423 1.306  C19  RNF 21 
RNF C20  C19 C 0 1 Y N N -65.490 25.181 0.319   6.408  0.161  0.023  C20  RNF 22 
RNF C21  C20 C 0 1 Y N N -66.847 25.264 0.608   7.110  0.367  1.209  C21  RNF 23 
RNF C22  C21 C 0 1 Y N N -67.317 26.119 1.587   8.465  0.622  1.170  C22  RNF 24 
RNF C23  C22 C 0 1 Y N N -66.441 26.924 2.270   9.127  0.673  -0.043 C23  RNF 25 
RNF C24  C23 C 0 1 Y N N -65.103 26.888 1.986   8.436  0.469  -1.224 C24  RNF 26 
RNF C25  C24 C 0 1 Y N N -64.632 26.028 1.012   7.081  0.207  -1.196 C25  RNF 27 
RNF C3   C25 C 0 1 Y N N -60.915 24.142 -6.123  -3.371 -0.826 0.194  C3   RNF 28 
RNF N2   N3  N 0 1 Y N N -61.827 23.451 -5.405  -2.045 -0.806 0.181  N2   RNF 29 
RNF N4   N4  N 0 1 Y N N -64.219 23.019 -8.206  -1.768 2.851  -0.046 N4   RNF 30 
RNF N5   N5  N 0 1 Y N N -62.599 24.147 -9.263  -3.950 2.765  -0.035 N5   RNF 31 
RNF N6   N6  N 0 1 N N N -59.787 24.552 -5.505  -4.022 -2.046 0.272  N6   RNF 32 
RNF H12  H1  H 0 1 N N N -64.651 22.949 -5.140  0.487  1.191  0.036  H12  RNF 33 
RNF H61  H2  H 0 1 N N N -64.421 23.536 -10.234 -2.875 4.649  -0.153 H61  RNF 34 
RNF H71  H3  H 0 1 N N N -62.491 24.823 -11.246 -6.002 2.332  -0.005 H71  RNF 35 
RNF H81  H4  H 0 1 N N N -60.788 23.059 -10.910 -4.962 4.985  1.088  H81  RNF 36 
RNF H82  H5  H 0 1 N N N -60.065 24.593 -11.500 -6.656 4.440  1.124  H82  RNF 37 
RNF H83  H6  H 0 1 N N N -59.908 24.134 -9.771  -5.421 3.569  2.064  H83  RNF 38 
RNF H91  H7  H 0 1 N N N -62.572 26.782 -9.758  -5.430 3.318  -2.207 H91  RNF 39 
RNF H93  H8  H 0 1 N N N -60.967 26.332 -9.090  -6.661 4.294  -1.370 H93  RNF 40 
RNF H92  H9  H 0 1 N N N -61.124 26.792 -10.820 -4.967 4.839  -1.406 H92  RNF 41 
RNF H112 H10 H 0 0 N N N -59.216 21.839 -5.267  -4.426 -4.010 2.001  H112 RNF 42 
RNF H111 H11 H 0 0 N N N -57.587 22.183 -4.595  -3.477 -5.265 1.169  H111 RNF 43 
RNF H151 H12 H 0 0 N N N -62.132 23.203 -2.221  2.347  -0.737 -2.006 H151 RNF 44 
RNF H161 H13 H 0 0 N N N -62.914 24.605 -0.375  4.764  -0.281 -2.075 H161 RNF 45 
RNF H11  H14 H 0 1 N N N -59.248 22.113 -2.933  -5.790 -5.364 0.583  H11  RNF 46 
RNF H14  H15 H 0 1 N N N -64.127 20.781 -3.903  0.504  -1.430 1.089  H14  RNF 47 
RNF H13  H16 H 0 1 N N N -62.530 21.602 -3.862  0.481  -1.539 -0.687 H13  RNF 48 
RNF H101 H17 H 0 0 N N N -57.702 24.483 -5.220  -2.339 -3.111 0.930  H101 RNF 49 
RNF H122 H18 H 0 0 N N N -58.161 24.501 -7.625  -2.369 -4.710 -1.008 H122 RNF 50 
RNF H121 H19 H 0 0 N N N -59.053 22.948 -7.483  -3.771 -3.832 -1.666 H121 RNF 51 
RNF H131 H20 H 0 0 N N N -56.790 22.608 -8.356  -2.429 -1.749 -1.747 H131 RNF 52 
RNF H133 H21 H 0 0 N N N -56.101 23.386 -6.891  -1.027 -2.626 -1.089 H133 RNF 53 
RNF H132 H22 H 0 0 N N N -56.992 21.833 -6.748  -1.661 -3.041 -2.700 H132 RNF 54 
RNF H181 H23 H 0 0 N N N -66.943 23.741 -1.432  4.817  -0.007 2.201  H181 RNF 55 
RNF H191 H24 H 0 0 N N N -66.161 22.328 -3.268  2.400  -0.463 2.251  H191 RNF 56 
RNF H211 H25 H 0 0 N N N -67.546 24.650 0.059   6.594  0.328  2.157  H211 RNF 57 
RNF H221 H26 H 0 0 N N N -68.372 26.153 1.814   9.010  0.782  2.089  H221 RNF 58 
RNF H231 H27 H 0 0 N N N -66.810 27.590 3.036   10.188 0.873  -0.069 H231 RNF 59 
RNF H241 H28 H 0 0 N N N -64.418 27.529 2.521   8.957  0.511  -2.168 H241 RNF 60 
RNF H251 H29 H 0 0 N N N -63.576 26.013 0.785   6.543  0.043  -2.118 H251 RNF 61 
RNF H62  H30 H 0 1 N N N -59.616 25.480 -5.835  -4.991 -2.080 0.274  H62  RNF 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RNF C8  C7   SING N N 1  
RNF C7  C9   SING N N 2  
RNF C7  N5   SING N N 3  
RNF C6  N5   SING Y N 4  
RNF C6  N4   DOUB Y N 5  
RNF N5  C4   SING Y N 6  
RNF N4  C5   SING Y N 7  
RNF C4  N3   DOUB Y N 8  
RNF C4  C5   SING Y N 9  
RNF N3  C3   SING Y N 10 
RNF C5  C2   DOUB Y N 11 
RNF C13 C12  SING N N 12 
RNF C12 C10  SING N N 13 
RNF C3  N6   SING N N 14 
RNF C3  N2   DOUB Y N 15 
RNF C2  N2   SING Y N 16 
RNF C2  N1   SING N N 17 
RNF C10 N6   SING N N 18 
RNF C10 C11  SING N N 19 
RNF N1  C1   SING N N 20 
RNF C11 O1   SING N N 21 
RNF C1  C14  SING N N 22 
RNF C14 C19  DOUB Y N 23 
RNF C14 C15  SING Y N 24 
RNF C19 C18  SING Y N 25 
RNF C15 C16  DOUB Y N 26 
RNF C18 C17  DOUB Y N 27 
RNF C16 C17  SING Y N 28 
RNF C17 C20  SING N N 29 
RNF C20 C21  DOUB Y N 30 
RNF C20 C25  SING Y N 31 
RNF C21 C22  SING Y N 32 
RNF C25 C24  DOUB Y N 33 
RNF C22 C23  DOUB Y N 34 
RNF C24 C23  SING Y N 35 
RNF N1  H12  SING N N 36 
RNF C6  H61  SING N N 37 
RNF C7  H71  SING N N 38 
RNF C8  H81  SING N N 39 
RNF C8  H82  SING N N 40 
RNF C8  H83  SING N N 41 
RNF C9  H91  SING N N 42 
RNF C9  H93  SING N N 43 
RNF C9  H92  SING N N 44 
RNF C11 H112 SING N N 45 
RNF C11 H111 SING N N 46 
RNF C15 H151 SING N N 47 
RNF C16 H161 SING N N 48 
RNF O1  H11  SING N N 49 
RNF C1  H14  SING N N 50 
RNF C1  H13  SING N N 51 
RNF C10 H101 SING N N 52 
RNF C12 H122 SING N N 53 
RNF C12 H121 SING N N 54 
RNF C13 H131 SING N N 55 
RNF C13 H133 SING N N 56 
RNF C13 H132 SING N N 57 
RNF C18 H181 SING N N 58 
RNF C19 H191 SING N N 59 
RNF C21 H211 SING N N 60 
RNF C22 H221 SING N N 61 
RNF C23 H231 SING N N 62 
RNF C24 H241 SING N N 63 
RNF C25 H251 SING N N 64 
RNF N6  H62  SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RNF InChI            InChI                1.06    "InChI=1S/C25H30N6O/c1-4-21(15-32)28-25-29-23(22-24(30-25)31(16-27-22)17(2)3)26-14-18-10-12-20(13-11-18)19-8-6-5-7-9-19/h5-13,16-17,21,32H,4,14-15H2,1-3H3,(H2,26,28,29,30)/t21-/m1/s1" 
RNF InChIKey         InChI                1.06    BRJSFOFBYVFKCP-OAQYLSRUSA-N                                                                                                                                                             
RNF SMILES_CANONICAL CACTVS               3.385   "CC[C@H](CO)Nc1nc(NCc2ccc(cc2)c3ccccc3)c4ncn(C(C)C)c4n1"                                                                                                                                
RNF SMILES           CACTVS               3.385   "CC[CH](CO)Nc1nc(NCc2ccc(cc2)c3ccccc3)c4ncn(C(C)C)c4n1"                                                                                                                                 
RNF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC[C@H](CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCc3ccc(cc3)c4ccccc4"                                                                                                                              
RNF SMILES           "OpenEye OEToolkits" 3.1.0.0 "CCC(CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCc3ccc(cc3)c4ccccc4"                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           RNF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-[[6-[(4-phenylphenyl)methylamino]-9-propan-2-yl-purin-2-yl]amino]butan-1-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RNF "Create component" 2022-12-05 PDBE 
RNF "Initial release"  2023-09-13 RCSB 
# 
