data_SGF
#

_chem_comp.id                                   SGF
_chem_comp.name                                 "(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl 3-O-sulfo-beta-D-galactopyranoside"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H47 N O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Sphingosine-1-galactoside-3-sulfate
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-05-11
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       541.696
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SGF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4ELM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SGF  C17  C17  C  0  1  N  N  N  31.274  -17.971  -12.080  16.657   2.797  -0.532  C17  SGF   1  
SGF  C16  C16  C  0  1  N  N  N  30.620  -19.305  -11.694  15.242   2.949   0.030  C16  SGF   2  
SGF  C15  C15  C  0  1  N  N  N  31.527  -20.125  -10.773  14.382   1.769  -0.428  C15  SGF   3  
SGF  C14  C14  C  0  1  N  N  N  30.713  -21.147   -9.973  12.967   1.920   0.134  C14  SGF   4  
SGF  C13  C13  C  0  1  N  N  N  31.625  -22.167   -9.285  12.107   0.741  -0.324  C13  SGF   5  
SGF  C12  C12  C  0  1  N  N  N  31.196  -23.598   -9.612  10.693   0.892   0.238  C12  SGF   6  
SGF  C11  C11  C  0  1  N  N  N  32.365  -24.394  -10.192   9.833  -0.287  -0.220  C11  SGF   7  
SGF  C10  C10  C  0  1  N  N  N  31.864  -25.583  -11.012   8.418  -0.136   0.342  C10  SGF   8  
SGF  C9   C9   C  0  1  N  N  N  32.388  -26.900  -10.441   7.558  -1.316  -0.117  C9   SGF   9  
SGF  C8   C8   C  0  1  N  N  N  32.647  -27.913  -11.555   6.143  -1.164   0.446  C8   SGF  10  
SGF  C7   C7   C  0  1  N  N  N  34.143  -28.199  -11.693   5.283  -2.344  -0.013  C7   SGF  11  
SGF  C6   C6   C  0  1  N  N  N  34.392  -29.449  -12.540   3.868  -2.193   0.550  C6   SGF  12  
SGF  C5   C5   C  0  1  N  N  N  34.929  -29.078  -13.925   3.009  -3.372   0.091  C5   SGF  13  
SGF  C4   C4   C  0  1  N  N  N  34.386  -29.898  -14.905   1.615  -3.223   0.645  C4   SGF  14  
SGF  C3   C3   C  0  1  N  N  N  34.255  -29.428  -16.205   0.584  -3.237  -0.163  C3   SGF  15  
SGF  C2   C2   C  0  1  N  N  R  33.657  -30.349  -17.269  -0.809  -3.088   0.391  C2   SGF  16  
SGF  O1   O1   O  0  1  N  N  N  32.700  -29.623  -18.046  -0.739  -2.832   1.795  O1   SGF  17  
SGF  C1   C1   C  0  1  N  N  S  34.753  -30.901  -18.195  -1.513  -1.921  -0.306  C1   SGF  18  
SGF  C    C    C  0  1  N  N  N  34.318  -32.225  -18.837  -2.928  -1.770   0.257  C    SGF  19  
SGF  O    O    O  0  1  N  N  N  33.132  -32.111  -19.644  -3.544  -0.611  -0.309  O    SGF  20  
SGF  C43  C43  C  0  1  N  N  R  33.531  -32.200  -21.008  -4.876  -0.377   0.153  C43  SGF  21  
SGF  C44  C44  C  0  1  N  N  R  32.562  -33.045  -21.837  -5.388   0.948  -0.418  C44  SGF  22  
SGF  O3   O3   O  0  1  N  N  N  32.506  -34.376  -21.325  -4.576   2.021   0.062  O3   SGF  23  
SGF  O6   O6   O  0  1  N  N  N  33.616  -30.862  -21.558  -5.725  -1.441  -0.282  O6   SGF  24  
SGF  C47  C47  C  0  1  N  N  R  34.244  -30.891  -22.861  -7.081  -1.319   0.150  C47  SGF  25  
SGF  C48  C48  C  0  1  N  N  N  34.523  -29.462  -23.347  -7.885  -2.522  -0.347  C48  SGF  26  
SGF  O7   O7   O  0  1  N  N  N  35.612  -28.908  -22.604  -7.396  -3.712   0.276  O7   SGF  27  
SGF  C46  C46  C  0  1  N  N  S  33.336  -31.668  -23.829  -7.683  -0.032  -0.421  C46  SGF  28  
SGF  O5   O5   O  0  1  N  N  N  32.105  -30.965  -24.010  -7.688  -0.100  -1.848  O5   SGF  29  
SGF  C45  C45  C  0  1  N  N  S  33.050  -33.082  -23.287  -6.837   1.162   0.032  C45  SGF  30  
SGF  O4   O4   O  0  1  N  N  N  32.077  -33.742  -24.105  -7.348   2.360  -0.556  O4   SGF  31  
SGF  S    S    S  0  1  N  N  N  32.597  -34.936  -24.714  -7.239   3.585   0.341  S    SGF  32  
SGF  O10  O10  O  0  1  N  N  N  31.563  -35.506  -25.639  -7.963   4.622  -0.306  O10  SGF  33  
SGF  O9   O9   O  0  1  N  N  N  33.820  -34.612  -25.522  -7.525   3.144   1.661  O9   SGF  34  
SGF  O8   O8   O  0  1  N  N  N  32.932  -35.947  -23.649  -5.779   4.016   0.340  O8   SGF  35  
SGF  N    N    N  0  1  N  N  N  36.004  -31.129  -17.452  -1.585  -2.184  -1.749  N    SGF  36  
SGF  H1   H1   H  0  1  N  N  N  30.598  -17.408  -12.740  17.269   3.638  -0.205  H1   SGF  37  
SGF  H2   H2   H  0  1  N  N  N  31.472  -17.384  -11.171  17.094   1.867  -0.170  H2   SGF  38  
SGF  H3   H3   H  0  1  N  N  N  32.221  -18.165  -12.605  16.615   2.780  -1.621  H3   SGF  39  
SGF  H4   H4   H  0  1  N  N  N  29.672  -19.102  -11.175  15.284   2.966   1.120  H4   SGF  40  
SGF  H5   H5   H  0  1  N  N  N  30.421  -19.884  -12.608  14.805   3.879  -0.331  H5   SGF  41  
SGF  H6   H6   H  0  1  N  N  N  32.273  -20.656  -11.382  14.340   1.752  -1.517  H6   SGF  42  
SGF  H7   H7   H  0  1  N  N  N  32.039  -19.447  -10.075  14.819   0.839  -0.066  H7   SGF  43  
SGF  H8   H8   H  0  1  N  N  N  30.126  -20.618   -9.208  13.009   1.938   1.223  H8   SGF  44  
SGF  H9   H9   H  0  1  N  N  N  30.033  -21.677  -10.656  12.530   2.851  -0.228  H9   SGF  45  
SGF  H10  H10  H  0  1  N  N  N  32.659  -22.014   -9.629  12.066   0.723  -1.413  H10  SGF  46  
SGF  H11  H11  H  0  1  N  N  N  31.575  -22.017   -8.196  12.545  -0.190   0.038  H11  SGF  47  
SGF  H12  H12  H  0  1  N  N  N  30.378  -23.571  -10.347  10.734   0.910   1.327  H12  SGF  48  
SGF  H13  H13  H  0  1  N  N  N  30.846  -24.089   -8.692  10.255   1.823  -0.124  H13  SGF  49  
SGF  H14  H14  H  0  1  N  N  N  32.992  -24.764   -9.368   9.791  -0.305  -1.309  H14  SGF  50  
SGF  H15  H15  H  0  1  N  N  N  32.962  -23.736  -10.840  10.270  -1.218   0.141  H15  SGF  51  
SGF  H16  H16  H  0  1  N  N  N  32.212  -25.477  -12.050   8.460  -0.119   1.431  H16  SGF  52  
SGF  H17  H17  H  0  1  N  N  N  30.764  -25.595  -10.994   7.981   0.794  -0.020  H17  SGF  53  
SGF  H18  H18  H  0  1  N  N  N  31.643  -27.313   -9.745   7.516  -1.333  -1.206  H18  SGF  54  
SGF  H19  H19  H  0  1  N  N  N  33.328  -26.710   -9.901   7.995  -2.246   0.245  H19  SGF  55  
SGF  H20  H20  H  0  1  N  N  N  32.268  -27.509  -12.505   6.185  -1.147   1.535  H20  SGF  56  
SGF  H21  H21  H  0  1  N  N  N  32.121  -28.850  -11.320   5.706  -0.234   0.084  H21  SGF  57  
SGF  H22  H22  H  0  1  N  N  N  34.573  -28.352  -10.692   5.242  -2.362  -1.102  H22  SGF  58  
SGF  H23  H23  H  0  1  N  N  N  34.630  -27.337  -12.173   5.721  -3.275   0.349  H23  SGF  59  
SGF  H24  H24  H  0  1  N  N  N  33.446  -29.998  -12.657   3.910  -2.175   1.639  H24  SGF  60  
SGF  H25  H25  H  0  1  N  N  N  35.127  -30.089  -12.029   3.431  -1.262   0.188  H25  SGF  61  
SGF  H26  H26  H  0  1  N  N  N  36.023  -29.190  -13.928   2.967  -3.390  -0.998  H26  SGF  62  
SGF  H27  H27  H  0  1  N  N  N  34.666  -28.033  -14.145   3.446  -4.303   0.453  H27  SGF  63  
SGF  H28  H28  H  0  1  N  N  N  34.066  -30.899  -14.657   1.466  -3.105   1.708  H28  SGF  64  
SGF  H29  H29  H  0  1  N  N  N  34.571  -28.427  -16.461   0.733  -3.355  -1.226  H29  SGF  65  
SGF  H30  H30  H  0  1  N  N  N  33.167  -31.195  -16.765  -1.370  -4.006   0.216  H30  SGF  66  
SGF  H31  H31  H  0  1  N  N  N  32.022  -29.281  -17.475  -0.254  -2.027   2.024  H31  SGF  67  
SGF  H32  H32  H  0  1  N  N  N  34.934  -30.168  -18.995  -0.953  -1.003  -0.132  H32  SGF  68  
SGF  H33  H33  H  0  1  N  N  N  34.125  -32.953  -18.036  -3.515  -2.653   0.005  H33  SGF  69  
SGF  H34  H34  H  0  1  N  N  N  35.138  -32.589  -19.473  -2.879  -1.663   1.340  H34  SGF  70  
SGF  H35  H35  H  0  1  N  N  N  34.523  -32.672  -21.065  -4.880  -0.330   1.242  H35  SGF  71  
SGF  H36  H36  H  0  1  N  N  N  31.566  -32.580  -21.807  -5.345   0.917  -1.507  H36  SGF  72  
SGF  H37  H37  H  0  1  N  N  N  32.203  -34.357  -20.425  -3.643   1.947  -0.182  H37  SGF  73  
SGF  H38  H38  H  0  1  N  N  N  35.204  -31.423  -22.791  -7.115  -1.284   1.239  H38  SGF  74  
SGF  H39  H39  H  0  1  N  N  N  34.782  -29.483  -24.416  -8.937  -2.386  -0.094  H39  SGF  75  
SGF  H40  H40  H  0  1  N  N  N  33.626  -28.843  -23.199  -7.779  -2.609  -1.428  H40  SGF  76  
SGF  H41  H41  H  0  1  N  N  N  35.784  -28.024  -22.905  -7.861  -4.516   0.008  H41  SGF  77  
SGF  H42  H42  H  0  1  N  N  N  33.857  -31.765  -24.793  -8.703   0.086  -0.057  H42  SGF  78  
SGF  H43  H43  H  0  1  N  N  N  32.284  -30.094  -24.344  -8.206  -0.834  -2.205  H43  SGF  79  
SGF  H44  H44  H  0  1  N  N  N  33.992  -33.650  -23.314  -6.873   1.244   1.118  H44  SGF  80  
SGF  H45  H45  H  0  1  N  N  N  36.301  -30.274  -17.027  -2.100  -3.032  -1.937  H45  SGF  81  
SGF  H46  H46  H  0  1  N  N  N  35.850  -31.817  -16.743  -1.988  -1.400  -2.240  H46  SGF  82  
SGF  H48  H48  H  0  1  N  N  N  32.418  -36.734  -23.786  -5.598   4.794   0.884  H48  SGF  83  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SGF  O10  S    DOUB  N  N   1  
SGF  O9   S    DOUB  N  N   2  
SGF  S    O4   SING  N  N   3  
SGF  S    O8   SING  N  N   4  
SGF  O4   C45  SING  N  N   5  
SGF  O5   C46  SING  N  N   6  
SGF  C46  C45  SING  N  N   7  
SGF  C46  C47  SING  N  N   8  
SGF  C48  C47  SING  N  N   9  
SGF  C48  O7   SING  N  N  10  
SGF  C45  C44  SING  N  N  11  
SGF  C47  O6   SING  N  N  12  
SGF  C44  O3   SING  N  N  13  
SGF  C44  C43  SING  N  N  14  
SGF  O6   C43  SING  N  N  15  
SGF  C43  O    SING  N  N  16  
SGF  O    C    SING  N  N  17  
SGF  C    C1   SING  N  N  18  
SGF  C1   N    SING  N  N  19  
SGF  C1   C2   SING  N  N  20  
SGF  O1   C2   SING  N  N  21  
SGF  C2   C3   SING  N  N  22  
SGF  C3   C4   DOUB  N  E  23  
SGF  C4   C5   SING  N  N  24  
SGF  C5   C6   SING  N  N  25  
SGF  C6   C7   SING  N  N  26  
SGF  C17  C16  SING  N  N  27  
SGF  C16  C15  SING  N  N  28  
SGF  C7   C8   SING  N  N  29  
SGF  C8   C9   SING  N  N  30  
SGF  C10  C9   SING  N  N  31  
SGF  C10  C11  SING  N  N  32  
SGF  C15  C14  SING  N  N  33  
SGF  C11  C12  SING  N  N  34  
SGF  C14  C13  SING  N  N  35  
SGF  C12  C13  SING  N  N  36  
SGF  C17  H1   SING  N  N  37  
SGF  C17  H2   SING  N  N  38  
SGF  C17  H3   SING  N  N  39  
SGF  C16  H4   SING  N  N  40  
SGF  C16  H5   SING  N  N  41  
SGF  C15  H6   SING  N  N  42  
SGF  C15  H7   SING  N  N  43  
SGF  C14  H8   SING  N  N  44  
SGF  C14  H9   SING  N  N  45  
SGF  C13  H10  SING  N  N  46  
SGF  C13  H11  SING  N  N  47  
SGF  C12  H12  SING  N  N  48  
SGF  C12  H13  SING  N  N  49  
SGF  C11  H14  SING  N  N  50  
SGF  C11  H15  SING  N  N  51  
SGF  C10  H16  SING  N  N  52  
SGF  C10  H17  SING  N  N  53  
SGF  C9   H18  SING  N  N  54  
SGF  C9   H19  SING  N  N  55  
SGF  C8   H20  SING  N  N  56  
SGF  C8   H21  SING  N  N  57  
SGF  C7   H22  SING  N  N  58  
SGF  C7   H23  SING  N  N  59  
SGF  C6   H24  SING  N  N  60  
SGF  C6   H25  SING  N  N  61  
SGF  C5   H26  SING  N  N  62  
SGF  C5   H27  SING  N  N  63  
SGF  C4   H28  SING  N  N  64  
SGF  C3   H29  SING  N  N  65  
SGF  C2   H30  SING  N  N  66  
SGF  O1   H31  SING  N  N  67  
SGF  C1   H32  SING  N  N  68  
SGF  C    H33  SING  N  N  69  
SGF  C    H34  SING  N  N  70  
SGF  C43  H35  SING  N  N  71  
SGF  C44  H36  SING  N  N  72  
SGF  O3   H37  SING  N  N  73  
SGF  C47  H38  SING  N  N  74  
SGF  C48  H39  SING  N  N  75  
SGF  C48  H40  SING  N  N  76  
SGF  O7   H41  SING  N  N  77  
SGF  C46  H42  SING  N  N  78  
SGF  O5   H43  SING  N  N  79  
SGF  C45  H44  SING  N  N  80  
SGF  N    H45  SING  N  N  81  
SGF  N    H46  SING  N  N  82  
SGF  O8   H48  SING  N  N  83  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SGF  SMILES            ACDLabs               12.01  "O=S(=O)(O)OC1C(O)C(OC(OCC(N)C(O)/C=C/CCCCCCCCCCCCC)C1O)CO"  
SGF  InChI             InChI                 1.03   "InChI=1S/C24H47NO10S/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-19(27)18(25)17-33-24-22(29)23(35-36(30,31)32)21(28)20(16-26)34-24/h14-15,18-24,26-29H,2-13,16-17,25H2,1H3,(H,30,31,32)/b15-14+/t18-,19+,20+,21-,22+,23-,24+/m0/s1"  
SGF  InChIKey          InChI                 1.03   BXSULSOCJNTUJS-YTBMLWRQSA-N  
SGF  SMILES_CANONICAL  CACTVS                3.370  "CCCCCCCCCCCCC/C=C/[C@@H](O)[C@@H](N)CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O[S](O)(=O)=O)[C@H]1O"  
SGF  SMILES            CACTVS                3.370  "CCCCCCCCCCCCCC=C[CH](O)[CH](N)CO[CH]1O[CH](CO)[CH](O)[CH](O[S](O)(=O)=O)[CH]1O"  
SGF  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCCCCCCCCCCCC/C=C/[C@H]([C@H](CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)OS(=O)(=O)O)O)N)O"  
SGF  SMILES            "OpenEye OEToolkits"  1.7.6  "CCCCCCCCCCCCCC=CC(C(COC1C(C(C(C(O1)CO)O)OS(=O)(=O)O)O)N)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SGF  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl 3-O-sulfo-beta-D-galactopyranoside"  
SGF  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2R,3R,4S,5S,6R)-2-[(E,2S,3R)-2-azanyl-3-oxidanyl-octadec-4-enoxy]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl] hydrogen sulfate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SGF  "Create component"  2012-05-11  RCSB  
SGF  "Initial release"   2013-02-01  RCSB  
SGF  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SGF
_pdbx_chem_comp_synonyms.name        Sphingosine-1-galactoside-3-sulfate
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
