data_UGF
#

_chem_comp.id                                   UGF
_chem_comp.name                                 
;(2~{R},3~{S},4~{R},5~{R},6~{R})-6-[[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidany
l)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3-fluoranyl-4,5-bis(oxidanyl)oxane-2-carboxylic acid
;

_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H21 F N2 O17 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "UDP-4-Deoxy-4-Fluoro-Glucuronic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-01
_chem_comp.pdbx_modified_date                   2020-07-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       582.276
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UGF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Z76
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UGF  O2     O1   O  0  1  N  N  N  -4.654  17.681  -7.777  -5.845  -2.020  -2.223  O2     UGF   1  
UGF  C2     C1   C  0  1  N  N  N  -3.638  16.989  -7.674  -5.862  -2.218  -1.024  C2     UGF   2  
UGF  N3     N1   N  0  1  N  N  N  -2.377  17.599  -7.736  -6.267  -3.413  -0.555  N3     UGF   3  
UGF  C4     C2   C  0  1  N  N  N  -1.211  16.898  -7.658  -6.292  -3.649   0.772  C4     UGF   4  
UGF  O4     O2   O  0  1  N  N  N  -0.121  17.486  -7.760  -6.658  -4.730   1.198  O4     UGF   5  
UGF  C5     C3   C  0  1  N  N  N  -1.315  15.511  -7.513  -5.889  -2.628   1.667  C5     UGF   6  
UGF  C6     C4   C  0  1  N  N  N  -2.564  14.908  -7.431  -5.488  -1.439   1.169  C6     UGF   7  
UGF  N1     N2   N  0  1  N  N  N  -3.720  15.648  -7.515  -5.472  -1.242  -0.184  N1     UGF   8  
UGF  C1D    C5   C  0  1  N  N  R  -5.035  15.018  -7.406  -5.031   0.047  -0.725  C1D    UGF   9  
UGF  O4D    O3   O  0  1  N  N  N  -5.077  14.713  -5.984  -3.726   0.388  -0.209  O4D    UGF  10  
UGF  C2D    C6   C  0  1  N  N  R  -5.186  13.754  -8.165  -5.958   1.181  -0.235  C2D    UGF  11  
UGF  O2D    O4   O  0  1  N  N  N  -5.783  14.107  -9.448  -6.927   1.503  -1.234  O2D    UGF  12  
UGF  C3D    C7   C  0  1  N  N  S  -6.181  12.986  -7.273  -5.003   2.373  -0.002  C3D    UGF  13  
UGF  O3D    O5   O  0  1  N  N  N  -7.581  13.292  -7.681  -5.353   3.468  -0.852  O3D    UGF  14  
UGF  C4D    C8   C  0  1  N  N  R  -5.907  13.504  -5.869  -3.612   1.818  -0.380  C4D    UGF  15  
UGF  C5D    C9   C  0  1  N  N  N  -5.114  12.554  -4.972  -2.541   2.382   0.556  C5D    UGF  16  
UGF  O5D    O6   O  0  1  N  N  N  -4.076  12.026  -5.755  -1.258   1.890   0.164  O5D    UGF  17  
UGF  PA     P1   P  0  1  N  N  N  -2.843  11.132  -5.013   0.102   2.281   0.931  PA     UGF  18  
UGF  O1A    O7   O  0  1  N  N  N  -1.763  10.818  -5.990   0.235   3.754   0.982  O1A    UGF  19  
UGF  O2A    O8   O  0  1  N  N  N  -2.678  11.566  -3.592   0.062   1.693   2.429  O2A    UGF  20  
UGF  O3A    O9   O  0  1  N  N  N  -3.653   9.727  -4.749   1.360   1.656   0.143  O3A    UGF  21  
UGF  PB     P2   P  0  1  N  N  N  -4.517   8.824  -5.800   2.949   1.913   0.190  PB     UGF  22  
UGF  O1B    O10  O  0  1  N  N  N  -5.871   8.758  -5.220   3.290   3.302  -0.550  O1B    UGF  23  
UGF  O2B    O11  O  0  1  N  N  N  -4.292   9.124  -7.232   3.396   1.983   1.599  O2B    UGF  24  
UGF  O3B    O12  O  0  1  N  N  N  -3.678   7.474  -5.731   3.710   0.706  -0.555  O3B    UGF  25  
UGF  "C1'"  C10  C  0  1  N  N  R  -3.235   6.912  -4.479   5.134   0.590  -0.593  "C1'"  UGF  26  
UGF  "O5'"  O13  O  0  1  N  N  N  -4.182   6.079  -3.895   5.580  -0.170   0.532  "O5'"  UGF  27  
UGF  "C5'"  C11  C  0  1  N  N  R  -4.573   5.024  -4.748   5.030  -1.487   0.602  "C5'"  UGF  28  
UGF  "C6'"  C12  C  0  1  N  N  N  -5.689   4.217  -4.047   5.544  -2.183   1.836  "C6'"  UGF  29  
UGF  "O'P"  O14  O  0  1  N  N  N  -6.238   4.715  -3.041   5.082  -3.400   2.162  "O'P"  UGF  30  
UGF  "O'Q"  O15  O  0  1  N  N  N  -5.973   3.121  -4.550   6.373  -1.645   2.531  "O'Q"  UGF  31  
UGF  "C4'"  C13  C  0  1  N  N  S  -3.346   4.122  -4.994   5.446  -2.279  -0.641  "C4'"  UGF  32  
UGF  "F4'"  F1   F  0  1  N  N  N  -3.758   3.138  -5.881   4.863  -3.550  -0.603  "F4'"  UGF  33  
UGF  "C3'"  C14  C  0  1  N  N  R  -2.141   4.937  -5.500   4.971  -1.535  -1.893  "C3'"  UGF  34  
UGF  "O3'"  O16  O  0  1  N  N  N  -0.949   4.154  -5.328   5.419  -2.228  -3.060  "O3'"  UGF  35  
UGF  "C2'"  C15  C  0  1  N  N  R  -1.937   6.145  -4.678   5.554  -0.118  -1.883  "C2'"  UGF  36  
UGF  "O2'"  O17  O  0  1  N  N  N  -1.009   7.014  -5.367   5.060   0.609  -3.010  "O2'"  UGF  37  
UGF  H1     H1   H  0  1  N  N  N  -2.331  18.592  -7.842  -6.541  -4.107  -1.174  H1     UGF  38  
UGF  H2     H2   H  0  1  N  N  N  -0.421  14.906  -7.465  -5.903  -2.799   2.734  H2     UGF  39  
UGF  H3     H3   H  0  1  N  N  N  -2.628  13.838  -7.299  -5.177  -0.649   1.837  H3     UGF  40  
UGF  H4     H4   H  0  1  N  N  N  -5.831  15.727  -7.678  -5.013   0.014  -1.814  H4     UGF  41  
UGF  H5     H5   H  0  1  N  N  N  -4.235  13.211  -8.271  -6.449   0.898   0.697  H5     UGF  42  
UGF  H6     H6   H  0  1  N  N  N  -5.899  13.322  -9.971  -7.536   2.210  -0.979  H6     UGF  43  
UGF  H7     H7   H  0  1  N  N  N  -5.984  11.905  -7.329  -5.021   2.679   1.044  H7     UGF  44  
UGF  H8     H8   H  0  1  N  N  N  -8.185  12.814  -7.125  -6.241   3.816  -0.698  H8     UGF  45  
UGF  H9     H9   H  0  1  N  N  N  -6.861  13.749  -5.380  -3.376   2.059  -1.416  H9     UGF  46  
UGF  H10    H10  H  0  1  N  N  N  -4.699  13.102  -4.113  -2.546   3.470   0.500  H10    UGF  47  
UGF  H11    H11  H  0  1  N  N  N  -5.764  11.744  -4.610  -2.753   2.070   1.579  H11    UGF  48  
UGF  H12    H12  H  0  1  N  N  N  -1.753  11.618  -3.382  -0.024   0.731   2.472  H12    UGF  49  
UGF  H13    H13  H  0  1  N  N  N  -6.515   8.933  -5.897   3.024   3.327  -1.480  H13    UGF  50  
UGF  H14    H14  H  0  1  N  N  N  -3.019   7.741  -3.790   5.581   1.583  -0.561  H14    UGF  51  
UGF  H15    H15  H  0  1  N  N  N  -4.946   5.405  -5.710   3.942  -1.426   0.646  H15    UGF  52  
UGF  H16    H16  H  0  1  N  N  N  -6.908   4.123  -2.720   5.442  -3.806   2.963  H16    UGF  53  
UGF  H17    H17  H  0  1  N  N  N  -3.065   3.666  -4.033   6.531  -2.376  -0.665  H17    UGF  54  
UGF  H18    H18  H  0  1  N  N  N  -2.292   5.207  -6.556   3.882  -1.482  -1.895  H18    UGF  55  
UGF  H19    H19  H  0  1  N  N  N  -0.198   4.647  -5.637   5.093  -3.136  -3.127  H19    UGF  56  
UGF  H20    H20  H  0  1  N  N  N  -1.532   5.861  -3.695   6.642  -0.172  -1.932  H20    UGF  57  
UGF  H21    H21  H  0  1  N  N  N  -0.866   7.798  -4.851   5.389   1.517  -3.067  H21    UGF  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UGF  O2D    C2D    SING  N  N   1  
UGF  C2D    C1D    SING  N  N   2  
UGF  C2D    C3D    SING  N  N   3  
UGF  O2     C2     DOUB  N  N   4  
UGF  O4     C4     DOUB  N  N   5  
UGF  N3     C2     SING  N  N   6  
UGF  N3     C4     SING  N  N   7  
UGF  O3D    C3D    SING  N  N   8  
UGF  C2     N1     SING  N  N   9  
UGF  C4     C5     SING  N  N  10  
UGF  N1     C6     SING  N  N  11  
UGF  N1     C1D    SING  N  N  12  
UGF  C5     C6     DOUB  N  N  13  
UGF  C1D    O4D    SING  N  N  14  
UGF  C3D    C4D    SING  N  N  15  
UGF  O2B    PB     DOUB  N  N  16  
UGF  O1A    PA     DOUB  N  N  17  
UGF  O4D    C4D    SING  N  N  18  
UGF  "F4'"  "C4'"  SING  N  N  19  
UGF  C4D    C5D    SING  N  N  20  
UGF  PB     O3B    SING  N  N  21  
UGF  PB     O1B    SING  N  N  22  
UGF  PB     O3A    SING  N  N  23  
UGF  O5D    PA     SING  N  N  24  
UGF  O5D    C5D    SING  N  N  25  
UGF  O3B    "C1'"  SING  N  N  26  
UGF  "C3'"  "O3'"  SING  N  N  27  
UGF  "C3'"  "C4'"  SING  N  N  28  
UGF  "C3'"  "C2'"  SING  N  N  29  
UGF  "O2'"  "C2'"  SING  N  N  30  
UGF  PA     O3A    SING  N  N  31  
UGF  PA     O2A    SING  N  N  32  
UGF  "C4'"  "C5'"  SING  N  N  33  
UGF  "C5'"  "C6'"  SING  N  N  34  
UGF  "C5'"  "O5'"  SING  N  N  35  
UGF  "C2'"  "C1'"  SING  N  N  36  
UGF  "O'Q"  "C6'"  DOUB  N  N  37  
UGF  "C1'"  "O5'"  SING  N  N  38  
UGF  "C6'"  "O'P"  SING  N  N  39  
UGF  N3     H1     SING  N  N  40  
UGF  C5     H2     SING  N  N  41  
UGF  C6     H3     SING  N  N  42  
UGF  C1D    H4     SING  N  N  43  
UGF  C2D    H5     SING  N  N  44  
UGF  O2D    H6     SING  N  N  45  
UGF  C3D    H7     SING  N  N  46  
UGF  O3D    H8     SING  N  N  47  
UGF  C4D    H9     SING  N  N  48  
UGF  C5D    H10    SING  N  N  49  
UGF  C5D    H11    SING  N  N  50  
UGF  O2A    H12    SING  N  N  51  
UGF  O1B    H13    SING  N  N  52  
UGF  "C1'"  H14    SING  N  N  53  
UGF  "C5'"  H15    SING  N  N  54  
UGF  "O'P"  H16    SING  N  N  55  
UGF  "C4'"  H17    SING  N  N  56  
UGF  "C3'"  H18    SING  N  N  57  
UGF  "O3'"  H19    SING  N  N  58  
UGF  "C2'"  H20    SING  N  N  59  
UGF  "O2'"  H21    SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UGF  InChI             InChI                 1.03   "InChI=1S/C15H21FN2O17P2/c16-6-8(21)10(23)14(33-11(6)13(24)25)34-37(29,30)35-36(27,28)31-3-4-7(20)9(22)12(32-4)18-2-1-5(19)17-15(18)26/h1-2,4,6-12,14,20-23H,3H2,(H,24,25)(H,27,28)(H,29,30)(H,17,19,26)/t4-,6+,7-,8+,9-,10-,11+,12-,14-/m1/s1"  
UGF  InChIKey          InChI                 1.03   LVBLRZZISSCAOI-CTMYAEKBSA-N  
UGF  SMILES_CANONICAL  CACTVS                3.385  "O[C@@H]1[C@@H](O)[C@H](O[C@@H]([C@H]1F)C(O)=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O"  
UGF  SMILES            CACTVS                3.385  "O[CH]1[CH](O)[CH](O[CH]([CH]1F)C(O)=O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O"  
UGF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)C(=O)O)F)O)O)O)O"  
UGF  SMILES            "OpenEye OEToolkits"  2.0.7  "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)C(=O)O)F)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          UGF
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{R},5~{R},6~{R})-6-[[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3-fluoranyl-4,5-bis(oxidanyl)oxane-2-carboxylic acid"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     UGF
_pdbx_chem_comp_synonyms.name        "UDP-4-Deoxy-4-Fluoro-Glucuronic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UGF  "Create component"  2020-06-01  PDBE  
UGF  "Modify synonyms"   2020-06-05  PDBE  
UGF  "Initial release"   2020-07-29  RCSB  
##
