data_WDF
# 
_chem_comp.id                                    WDF 
_chem_comp.name                                  "2,4-dichloro-Nalpha-[(2R)-2-chloro-3-(2-cyanophenyl)propanoyl]-N-[(2S)-4-{[4-(dimethylamino)butyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H39 Cl3 F N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-02 
_chem_comp.pdbx_modified_date                    2025-01-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        703.073 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WDF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UE0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WDF C1  C1  C  0 1 N N N N N N 10.262 -0.576  20.897 2.897   0.812  1.048  C1  WDF 1  
WDF C10 C2  C  0 1 N N N N N N 11.265 -3.468  22.332 0.281   -1.070 -0.700 C10 WDF 2  
WDF C11 C3  C  0 1 N N S N N N 11.241 -5.699  21.364 -1.690  -1.889 -1.875 C11 WDF 3  
WDF C12 C4  C  0 1 N N N N N N 10.487 -6.823  22.026 -1.404  -3.361 -2.177 C12 WDF 4  
WDF C13 C5  C  0 1 Y N N N N N 10.631 -6.682  23.521 0.051   -3.527 -2.533 C13 WDF 5  
WDF C14 C6  C  0 1 Y N N N N N 11.619 -7.387  24.201 0.956   -3.935 -1.570 C14 WDF 6  
WDF C15 C7  C  0 1 Y N N N N N 11.750 -7.247  25.582 2.290   -4.089 -1.895 C15 WDF 7  
WDF C16 C8  C  0 1 Y N N N N N 10.902 -6.402  26.291 2.721   -3.832 -3.186 C16 WDF 8  
WDF C17 C9  C  0 1 Y N N N N N 9.918  -5.695  25.614 1.815   -3.423 -4.149 C17 WDF 9  
WDF C18 C10 C  0 1 Y N N N N N 9.783  -5.840  24.238 0.480   -3.276 -3.823 C18 WDF 10 
WDF C19 C11 C  0 1 N N N N N N 11.213 -5.806  19.865 -3.196  -1.689 -1.695 C19 WDF 11 
WDF C2  C12 C  0 1 N N R N N N 10.516 -2.218  22.698 0.970   -0.595 0.554  C2  WDF 12 
WDF C20 C13 C  0 1 N N N N N N 11.895 -7.047  19.364 -3.490  -0.221 -1.519 C20 WDF 13 
WDF C21 C14 C  0 1 N N N N N N 11.741 -9.118  18.046 -5.046  1.622  -1.173 C21 WDF 14 
WDF C22 C15 C  0 1 N N N N N N 10.736 -9.694  17.087 -6.552  1.822  -0.993 C22 WDF 15 
WDF C23 C16 C  0 1 N N N N N N 11.247 -10.981 16.511 -6.851  3.312  -0.815 C23 WDF 16 
WDF C24 C17 C  0 1 N N N N N N 10.121 -11.946 16.262 -8.358  3.512  -0.635 C24 WDF 17 
WDF C25 C18 C  0 1 N N N N N N 10.783 -13.764 14.833 -8.336  5.692  -1.689 C25 WDF 18 
WDF C26 C19 C  0 1 N N N N N N 9.832  -14.225 16.997 -10.039 5.154  -0.054 C26 WDF 19 
WDF C27 C20 C  0 1 N N R N N N 10.868 0.576   20.133 4.296   1.287  0.751  C27 WDF 20 
WDF C28 C21 C  0 1 N N N N N N 10.466 0.560   18.685 4.370   2.804  0.936  C28 WDF 21 
WDF C29 C22 C  0 1 Y N N N N N 11.177 -0.580  18.019 5.733   3.295  0.521  C29 WDF 22 
WDF C3  C23 C  0 1 N N N N N N 10.734 -1.912  24.162 1.142   -1.770 1.518  C3  WDF 23 
WDF C30 C24 C  0 1 Y N N N N N 10.533 -1.288  17.014 5.995   3.585  -0.819 C30 WDF 24 
WDF C31 C25 C  0 1 N N N N N N 9.148  -0.887  16.617 4.971   3.413  -1.805 C31 WDF 25 
WDF C32 C26 C  0 1 Y N N N N N 11.171 -2.350  16.374 7.259   4.045  -1.194 C32 WDF 26 
WDF C33 C27 C  0 1 Y N N N N N 12.459 -2.706  16.764 8.241   4.209  -0.239 C33 WDF 27 
WDF C34 C28 C  0 1 Y N N N N N 13.103 -2.000  17.777 7.975   3.919  1.088  C34 WDF 28 
WDF C35 C29 C  0 1 Y N N N N N 12.470 -0.932  18.405 6.724   3.463  1.466  C35 WDF 29 
WDF C4  C30 C  0 1 Y N N N N N 9.742  -0.871  24.606 -0.210  -2.212 2.017  C4  WDF 30 
WDF C5  C31 C  0 1 Y N N N N N 8.447  -1.234  24.981 -0.873  -1.462 2.972  C5  WDF 31 
WDF C6  C32 C  0 1 Y N N N N N 7.535  -0.265  25.377 -2.114  -1.868 3.430  C6  WDF 32 
WDF C7  C33 C  0 1 Y N N N N N 7.906  1.070   25.401 -2.691  -3.023 2.932  C7  WDF 33 
WDF C8  C34 C  0 1 Y N N N N N 9.195  1.438   25.026 -2.026  -3.772 1.977  C8  WDF 34 
WDF C9  C35 C  0 1 Y N N N N N 10.111 0.470   24.628 -0.788  -3.363 1.516  C9  WDF 35 
WDF CL1 CL1 CL 0 0 N N N N N N 7.931  -2.887  24.959 -0.149  -0.014 3.597  CL1 WDF 36 
WDF CL2 CL2 CL 0 0 N N N N N N 6.752  2.259   25.899 -4.247  -3.533 3.506  CL2 WDF 37 
WDF CL3 CL3 CL 0 0 N N N N N N 10.411 2.133   20.870 5.454   0.488  1.879  CL3 WDF 38 
WDF F1  F1  F  0 1 N N N N N N 11.025 -6.264  27.632 4.025   -3.981 -3.505 F1  WDF 39 
WDF N1  N1  N  0 1 N N N N N N 10.984 -1.103  21.884 2.285   -0.048 0.211  N1  WDF 40 
WDF N2  N2  N  0 1 N N N N N N 10.599 -4.445  21.737 -0.996  -1.499 -0.645 N2  WDF 41 
WDF N3  N3  N  0 1 N N N N N N 11.190 -7.882  18.598 -4.760  0.195  -1.344 N3  WDF 42 
WDF N4  N4  N  0 1 N N N N N N 10.660 -13.306 16.213 -8.644  4.943  -0.464 N4  WDF 43 
WDF N5  N5  N  0 1 N N N N N N 8.119  -0.593  16.313 4.159   3.277  -2.588 N5  WDF 44 
WDF O1  O1  O  0 1 N N N N N N 9.172  -1.015  20.627 2.323   1.201  2.044  O1  WDF 45 
WDF O2  O2  O  0 1 N N N N N N 13.047 -7.268  19.639 -2.585  0.585  -1.536 O2  WDF 46 
WDF O3  O3  O  0 1 N N N N N N 12.439 -3.588  22.578 0.875   -1.066 -1.757 O3  WDF 47 
WDF H1  H1  H  0 1 N N N N N N 12.285 -5.706  21.711 -1.338  -1.273 -2.702 H1  WDF 48 
WDF H2  H2  H  0 1 N N N N N N 9.424  -6.770  21.749 -1.634  -3.964 -1.299 H2  WDF 49 
WDF H3  H3  H  0 1 N N N N N N 10.902 -7.789  21.703 -2.022  -3.687 -3.014 H3  WDF 50 
WDF H4  H4  H  0 1 N N N N N N 12.284 -8.043  23.659 0.619   -4.135 -0.563 H4  WDF 51 
WDF H5  H5  H  0 1 N N N N N N 12.516 -7.799  26.106 2.996   -4.407 -1.143 H5  WDF 52 
WDF H6  H6  H  0 1 N N N N N N 9.258  -5.033  26.155 2.150   -3.223 -5.156 H6  WDF 53 
WDF H7  H7  H  0 1 N N N N N N 9.011  -5.293  23.718 -0.228  -2.961 -4.575 H7  WDF 54 
WDF H8  H8  H  0 1 N N N N N N 11.721 -4.928  19.439 -3.720  -2.061 -2.576 H8  WDF 55 
WDF H9  H9  H  0 1 N N N N N N 10.165 -5.821  19.532 -3.533  -2.235 -0.814 H9  WDF 56 
WDF H10 H10 H  0 1 N N N N N N 9.442  -2.379  22.523 0.368   0.180  1.028  H10 WDF 57 
WDF H11 H11 H  0 1 N N N N N N 11.934 -9.835  18.858 -4.710  2.168  -2.054 H11 WDF 58 
WDF H12 H12 H  0 1 N N N N N N 12.680 -8.903  17.516 -4.523  1.995  -0.292 H12 WDF 59 
WDF H13 H13 H  0 1 N N N N N N 10.559 -8.977  16.272 -7.076  1.449  -1.873 H13 WDF 60 
WDF H14 H14 H  0 1 N N N N N N 9.793  -9.884  17.620 -6.889  1.276  -0.112 H14 WDF 61 
WDF H15 H15 H  0 1 N N N N N N 11.959 -11.433 17.217 -6.328  3.685  0.066  H15 WDF 62 
WDF H16 H16 H  0 1 N N N N N N 11.758 -10.771 15.560 -6.515  3.858  -1.696 H16 WDF 63 
WDF H17 H17 H  0 1 N N N N N N 9.636  -11.707 15.304 -8.881  3.139  -1.515 H17 WDF 64 
WDF H18 H18 H  0 1 N N N N N N 9.384  -11.871 17.075 -8.694  2.966  0.246  H18 WDF 65 
WDF H19 H19 H  0 1 N N N N N N 11.189 -14.786 14.820 -8.942  5.310  -2.511 H19 WDF 66 
WDF H20 H20 H  0 1 N N N N N N 9.792  -13.757 14.355 -8.557  6.748  -1.535 H20 WDF 67 
WDF H21 H21 H  0 1 N N N N N N 11.460 -13.094 14.283 -7.280  5.574  -1.931 H21 WDF 68 
WDF H22 H22 H  0 1 N N N N N N 9.755  -13.858 18.031 -10.707 4.753  -0.817 H22 WDF 69 
WDF H23 H23 H  0 1 N N N N N N 8.827  -14.283 16.553 -10.221 4.646  0.892  H23 WDF 70 
WDF H24 H24 H  0 1 N N N N N N 10.292 -15.224 16.996 -10.224 6.222  0.065  H24 WDF 71 
WDF H25 H25 H  0 1 N N N N N N 11.964 0.516   20.203 4.556   1.033  -0.276 H25 WDF 72 
WDF H26 H26 H  0 1 N N N N N N 10.753 1.509   18.208 3.609   3.282  0.319  H26 WDF 73 
WDF H27 H27 H  0 1 N N N N N N 9.378  0.421   18.601 4.198   3.052  1.983  H27 WDF 74 
WDF H28 H28 H  0 1 N N N N N N 10.594 -2.829  24.754 1.627   -2.597 1.000  H28 WDF 75 
WDF H29 H29 H  0 1 N N N N N N 11.756 -1.532  24.310 1.757   -1.460 2.363  H29 WDF 76 
WDF H30 H30 H  0 1 N N N N N N 10.671 -2.891  15.584 7.468   4.271  -2.229 H30 WDF 77 
WDF H31 H31 H  0 1 N N N N N N 12.960 -3.531  16.280 9.219   4.564  -0.527 H31 WDF 78 
WDF H32 H32 H  0 1 N N N N N N 14.101 -2.284  18.077 8.747   4.049  1.832  H32 WDF 79 
WDF H33 H33 H  0 1 N N N N N N 12.975 -0.381  19.184 6.522   3.243  2.504  H33 WDF 80 
WDF H34 H34 H  0 1 N N N N N N 6.535  -0.552  25.667 -2.632  -1.284 4.176  H34 WDF 81 
WDF H35 H35 H  0 1 N N N N N N 9.485  2.478   25.044 -2.476  -4.673 1.589  H35 WDF 82 
WDF H36 H36 H  0 1 N N N N N N 11.110 0.760   24.336 -0.272  -3.945 0.768  H36 WDF 83 
WDF H37 H37 H  0 1 N N N N N N 11.887 -0.717  22.075 2.716   -0.306 -0.620 H37 WDF 84 
WDF H38 H38 H  0 1 N N N N N N 9.627  -4.319  21.538 -1.454  -1.549 0.208  H38 WDF 85 
WDF H39 H39 H  0 1 N N N N N N 10.239 -7.651  18.392 -5.485  -0.450 -1.330 H39 WDF 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WDF C25 N4  SING N N 1  
WDF N4  C24 SING N N 2  
WDF N4  C26 SING N N 3  
WDF C24 C23 SING N N 4  
WDF N5  C31 TRIP N N 5  
WDF C32 C33 DOUB Y N 6  
WDF C32 C30 SING Y N 7  
WDF C23 C22 SING N N 8  
WDF C31 C30 SING N N 9  
WDF C33 C34 SING Y N 10 
WDF C30 C29 DOUB Y N 11 
WDF C22 C21 SING N N 12 
WDF C34 C35 DOUB Y N 13 
WDF C29 C35 SING Y N 14 
WDF C29 C28 SING N N 15 
WDF C21 N3  SING N N 16 
WDF N3  C20 SING N N 17 
WDF C28 C27 SING N N 18 
WDF C20 O2  DOUB N N 19 
WDF C20 C19 SING N N 20 
WDF C19 C11 SING N N 21 
WDF C27 CL3 SING N N 22 
WDF C27 C1  SING N N 23 
WDF O1  C1  DOUB N N 24 
WDF C1  N1  SING N N 25 
WDF C11 N2  SING N N 26 
WDF C11 C12 SING N N 27 
WDF N2  C10 SING N N 28 
WDF N1  C2  SING N N 29 
WDF C12 C13 SING N N 30 
WDF C10 O3  DOUB N N 31 
WDF C10 C2  SING N N 32 
WDF C2  C3  SING N N 33 
WDF C13 C14 DOUB Y N 34 
WDF C13 C18 SING Y N 35 
WDF C3  C4  SING N N 36 
WDF C14 C15 SING Y N 37 
WDF C18 C17 DOUB Y N 38 
WDF C4  C9  DOUB Y N 39 
WDF C4  C5  SING Y N 40 
WDF C9  C8  SING Y N 41 
WDF CL1 C5  SING N N 42 
WDF C5  C6  DOUB Y N 43 
WDF C8  C7  DOUB Y N 44 
WDF C6  C7  SING Y N 45 
WDF C7  CL2 SING N N 46 
WDF C15 C16 DOUB Y N 47 
WDF C17 C16 SING Y N 48 
WDF C16 F1  SING N N 49 
WDF C11 H1  SING N N 50 
WDF C12 H2  SING N N 51 
WDF C12 H3  SING N N 52 
WDF C14 H4  SING N N 53 
WDF C15 H5  SING N N 54 
WDF C17 H6  SING N N 55 
WDF C18 H7  SING N N 56 
WDF C19 H8  SING N N 57 
WDF C19 H9  SING N N 58 
WDF C2  H10 SING N N 59 
WDF C21 H11 SING N N 60 
WDF C21 H12 SING N N 61 
WDF C22 H13 SING N N 62 
WDF C22 H14 SING N N 63 
WDF C23 H15 SING N N 64 
WDF C23 H16 SING N N 65 
WDF C24 H17 SING N N 66 
WDF C24 H18 SING N N 67 
WDF C25 H19 SING N N 68 
WDF C25 H20 SING N N 69 
WDF C25 H21 SING N N 70 
WDF C26 H22 SING N N 71 
WDF C26 H23 SING N N 72 
WDF C26 H24 SING N N 73 
WDF C27 H25 SING N N 74 
WDF C28 H26 SING N N 75 
WDF C28 H27 SING N N 76 
WDF C3  H28 SING N N 77 
WDF C3  H29 SING N N 78 
WDF C32 H30 SING N N 79 
WDF C33 H31 SING N N 80 
WDF C34 H32 SING N N 81 
WDF C35 H33 SING N N 82 
WDF C6  H34 SING N N 83 
WDF C8  H35 SING N N 84 
WDF C9  H36 SING N N 85 
WDF N1  H37 SING N N 86 
WDF N2  H38 SING N N 87 
WDF N3  H39 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WDF SMILES           ACDLabs              12.01 "Clc1cc(Cl)ccc1CC(NC(=O)C(Cl)Cc1ccccc1C#N)C(=O)NC(Cc1ccc(F)cc1)CC(=O)NCCCCN(C)C"                                                                                                                                                                                   
WDF InChI            InChI                1.06  "InChI=1S/C35H39Cl3FN5O3/c1-44(2)16-6-5-15-41-33(45)21-29(17-23-9-13-28(39)14-10-23)42-35(47)32(19-25-11-12-27(36)20-30(25)37)43-34(46)31(38)18-24-7-3-4-8-26(24)22-40/h3-4,7-14,20,29,31-32H,5-6,15-19,21H2,1-2H3,(H,41,45)(H,42,47)(H,43,46)/t29-,31+,32+/m0/s1" 
WDF InChIKey         InChI                1.06  MNUPUCOFSLSMLT-JIZBBPSKSA-N                                                                                                                                                                                                                                        
WDF SMILES_CANONICAL CACTVS               3.385 "CN(C)CCCCNC(=O)C[C@H](Cc1ccc(F)cc1)NC(=O)[C@@H](Cc2ccc(Cl)cc2Cl)NC(=O)[C@H](Cl)Cc3ccccc3C#N"                                                                                                                                                                      
WDF SMILES           CACTVS               3.385 "CN(C)CCCCNC(=O)C[CH](Cc1ccc(F)cc1)NC(=O)[CH](Cc2ccc(Cl)cc2Cl)NC(=O)[CH](Cl)Cc3ccccc3C#N"                                                                                                                                                                          
WDF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCCCNC(=O)C[C@H](Cc1ccc(cc1)F)NC(=O)[C@@H](Cc2ccc(cc2Cl)Cl)NC(=O)[C@@H](Cc3ccccc3C#N)Cl"                                                                                                                                                                     
WDF SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)CCCCNC(=O)CC(Cc1ccc(cc1)F)NC(=O)C(Cc2ccc(cc2Cl)Cl)NC(=O)C(Cc3ccccc3C#N)Cl"                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WDF "SYSTEMATIC NAME" ACDLabs              12.01 "2,4-dichloro-Nalpha-[(2R)-2-chloro-3-(2-cyanophenyl)propanoyl]-N-[(2S)-4-{[4-(dimethylamino)butyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide"                
WDF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[[(2~{R})-2-[[(2~{R})-2-chloranyl-3-(2-cyanophenyl)propanoyl]amino]-3-(2,4-dichlorophenyl)propanoyl]amino]-~{N}-[4-(dimethylamino)butyl]-4-(4-fluorophenyl)butanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WDF "Create component" 2023-10-02 RCSB 
WDF "Initial release"  2025-01-15 RCSB 
# 
