data_X2F
# 
_chem_comp.id                                    X2F 
_chem_comp.name                                  2-deoxy-2-fluoro-alpha-D-xylopyranose 
_chem_comp.type                                  "D-saccharide, alpha linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C5 H9 F O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-DEOXY-2-FLUORO XYLOPYRANOSE; 2-deoxy-2-fluoro-alpha-D-xylose; 2-deoxy-2-fluoro-D-xylose; 2-deoxy-2-fluoro-xylose" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        152.121 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X2F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2XYL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 X2F "2-DEOXY-2-FLUORO XYLOPYRANOSE" PDB ? 
2 X2F 2-deoxy-2-fluoro-alpha-D-xylose PDB ? 
3 X2F 2-deoxy-2-fluoro-D-xylose       PDB ? 
4 X2F 2-deoxy-2-fluoro-xylose         PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X2F C1  C1  C 0 1 N N S N N N 21.616 68.514 36.882 -0.803 0.266  -1.355 C1  X2F 1  
X2F C2  C2  C 0 1 N N R N N N 20.869 69.536 37.771 0.639  0.493  -0.901 C2  X2F 2  
X2F C3  C3  C 0 1 N N S N N N 20.163 68.861 38.954 0.856  -0.202 0.447  C3  X2F 3  
X2F C4  C4  C 0 1 N N R N N N 19.226 67.797 38.388 -0.221 0.279  1.425  C4  X2F 4  
X2F C5  C5  C 0 1 N N N N N N 20.030 66.877 37.471 -1.599 0.068  0.795  C5  X2F 5  
X2F O1  O1  O 0 1 N Y N N N N 22.602 67.785 37.619 -1.050 -1.136 -1.467 O1  X2F 6  
X2F O3  O3  O 0 1 N N N N N N 19.405 69.801 39.705 2.152  0.124  0.952  O3  X2F 7  
X2F O4  O4  O 0 1 N N N N N N 18.681 67.023 39.462 -0.131 -0.467 2.640  O4  X2F 8  
X2F O5  O5  O 0 1 N N N N N N 20.604 67.638 36.396 -1.704 0.832  -0.404 O5  X2F 9  
X2F F2  F2  F 0 1 N N N N N N 21.698 70.588 38.159 1.518  -0.038 -1.851 F2  X2F 10 
X2F H1  H1  H 0 1 N N N N N N 22.170 69.023 36.059 -0.957 0.739  -2.325 H1  X2F 11 
X2F H2  H2  H 0 1 N N N N N N 20.061 69.989 37.149 0.824  1.562  -0.792 H2  X2F 12 
X2F H3  H3  H 0 1 N N N N N N 20.924 68.413 39.634 0.775  -1.281 0.319  H3  X2F 13 
X2F H4  H4  H 0 1 N N N N N N 18.398 68.283 37.820 -0.074 1.338  1.636  H4  X2F 14 
X2F H51 H51 H 0 1 N N N N N N 20.800 66.296 38.031 -1.735 -0.988 0.565  H51 X2F 15 
X2F H52 H52 H 0 1 N N N N N N 19.420 66.020 37.098 -2.371 0.387  1.496  H52 X2F 16 
X2F HO1 HO1 H 0 1 N Y N N N N 23.060 67.157 37.073 -1.966 -1.236 -1.759 HO1 X2F 17 
X2F HO3 HO3 H 0 1 N Y N N N N 18.967 69.383 40.437 2.793  -0.187 0.300  HO3 X2F 18 
X2F HO4 HO4 H 0 1 N N N N N N 18.097 66.360 39.109 -0.827 -0.135 3.224  HO4 X2F 19 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X2F C1 C2  SING N N 1  
X2F C1 O1  SING N N 2  
X2F C1 O5  SING N N 3  
X2F C1 H1  SING N N 4  
X2F C2 C3  SING N N 5  
X2F C2 F2  SING N N 6  
X2F C2 H2  SING N N 7  
X2F C3 C4  SING N N 8  
X2F C3 O3  SING N N 9  
X2F C3 H3  SING N N 10 
X2F C4 C5  SING N N 11 
X2F C4 O4  SING N N 12 
X2F C4 H4  SING N N 13 
X2F C5 O5  SING N N 14 
X2F C5 H51 SING N N 15 
X2F C5 H52 SING N N 16 
X2F O1 HO1 SING N N 17 
X2F O3 HO3 SING N N 18 
X2F O4 HO4 SING N N 19 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X2F SMILES           ACDLabs              10.04 "FC1C(O)C(O)COC1O"                                                          
X2F SMILES_CANONICAL CACTVS               3.341 "O[C@@H]1CO[C@H](O)[C@H](F)[C@H]1O"                                         
X2F SMILES           CACTVS               3.341 "O[CH]1CO[CH](O)[CH](F)[CH]1O"                                              
X2F SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@@H]([C@H]([C@H](O1)O)F)O)O"                                     
X2F SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(C(C(O1)O)F)O)O"                                                      
X2F InChI            InChI                1.03  "InChI=1S/C5H9FO4/c6-3-4(8)2(7)1-10-5(3)9/h2-5,7-9H,1H2/t2-,3-,4+,5+/m1/s1" 
X2F InChIKey         InChI                1.03  YVMHSZGJGHRGOD-MBMOQRBOSA-N                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X2F "SYSTEMATIC NAME"           ACDLabs              10.04 2-deoxy-2-fluoro-alpha-D-xylopyranose     
X2F "SYSTEMATIC NAME"           "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5R)-3-fluorooxane-2,4,5-triol" 
X2F "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE             1.0   a-D-Xylp2fluoro                           
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
X2F "CARBOHYDRATE ISOMER"                 D        PDB ? 
X2F "CARBOHYDRATE RING"                   pyranose PDB ? 
X2F "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
X2F "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X2F "Create component"         1999-07-08 RCSB 
X2F "Modify descriptor"        2011-06-04 RCSB 
X2F "Other modification"       2020-07-03 RCSB 
X2F "Modify name"              2020-07-17 RCSB 
X2F "Modify synonyms"          2020-07-17 RCSB 
X2F "Modify linking type"      2020-07-17 RCSB 
X2F "Modify leaving atom flag" 2020-07-17 RCSB 
X2F "Modify PCM"               2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 X2F GLU None Carbohydrate "Amino-acid side chain" "Any position" C1 OE1 ? ? 
2 X2F GLU None Carbohydrate "Amino-acid side chain" "Any position" C1 OE2 ? ? 
# 
