data_YRF
# 
_chem_comp.id                                    YRF 
_chem_comp.name                                  "7-[(1~{S})-1-[5-[(3-azanylazetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H28 F N5 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-20 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        545.583 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YRF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PGN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YRF C10  C1  C 0 1 Y N N N N N -21.705 -11.898 9.881  -0.966 1.119  0.591  C10  YRF 1  
YRF C11  C2  C 0 1 Y N N N N N -21.141 -12.047 8.501  -2.383 0.768  0.358  C11  YRF 2  
YRF C12  C3  C 0 1 Y N N N N N -20.299 -10.998 8.092  -3.339 1.024  1.344  C12  YRF 3  
YRF C13  C4  C 0 1 Y N N N N N -19.795 -10.893 6.851  -4.660 0.695  1.123  C13  YRF 4  
YRF C15  C5  C 0 1 Y N N N N N -20.013 -11.986 6.047  -5.040 0.108  -0.081 C15  YRF 5  
YRF C18  C6  C 0 1 N N N N N N -20.799 -9.662  3.606  -6.003 -2.947 -0.222 C18  YRF 6  
YRF C01  C7  C 0 1 N N N N N N -22.803 -12.447 15.718 4.232  4.195  0.038  C01  YRF 7  
YRF C02  C8  C 0 1 N N S N N N -23.375 -12.013 14.405 3.474  2.952  0.510  C02  YRF 8  
YRF C03  C9  C 0 1 Y N N N N N -22.749 -12.845 13.240 2.088  2.954  -0.081 C03  YRF 9  
YRF C04  C10 C 0 1 Y N N N N N -22.412 -12.185 12.029 1.112  2.098  0.424  C04  YRF 10 
YRF C06  C11 C 0 1 Y N N N N N -22.180 -10.711 10.416 -0.121 0.568  1.540  C06  YRF 11 
YRF C07  C12 C 0 1 N N N N N N -22.416 -9.390  9.777  -0.485 -0.473 2.501  C07  YRF 12 
YRF C21  C13 C 0 1 Y N N N N N -20.808 -13.109 6.409  -4.090 -0.148 -1.063 C21  YRF 13 
YRF C22  C14 C 0 1 Y N N N N N -21.393 -13.133 7.739  -2.770 0.184  -0.850 C22  YRF 14 
YRF C23  C15 C 0 1 Y N N N N N -21.844 -12.847 10.900 -0.176 2.115  -0.142 C23  YRF 15 
YRF C24  C16 C 0 1 Y N N N N N -21.597 -14.209 10.997 -0.463 2.985  -1.196 C24  YRF 16 
YRF C25  C17 C 0 1 Y N N N N N -21.939 -14.883 12.153 0.510  3.816  -1.675 C25  YRF 17 
YRF C26  C18 C 0 1 Y N N N N N -22.483 -14.194 13.270 1.783  3.803  -1.122 C26  YRF 18 
YRF C28  C19 C 0 1 N N N N N N -25.716 -13.098 15.023 4.698  0.689  0.957  C28  YRF 19 
YRF C29  C20 C 0 1 N N N N N N -26.969 -12.851 14.413 5.354  -0.316 -0.010 C29  YRF 20 
YRF C30  C21 C 0 1 N N N N N N -28.336 -13.431 14.554 4.662  -1.677 0.080  C30  YRF 21 
YRF C32  C22 C 0 1 N N N N N N -29.765 -15.005 15.638 4.610  -3.905 -0.888 C32  YRF 22 
YRF C33  C23 C 0 1 N N N N N N -29.877 -14.225 16.871 5.957  -4.626 -0.695 C33  YRF 23 
YRF C35  C24 C 0 1 N N N N N N -28.474 -13.725 16.732 6.429  -3.344 0.015  C35  YRF 24 
YRF C37  C25 C 0 1 N N N N N N -25.575 -11.406 13.385 4.485  1.436  -1.196 C37  YRF 25 
YRF F14  F1  F 0 1 N N N N N N -19.039 -9.773  6.514  -5.585 0.942  2.076  F14  YRF 26 
YRF N05  N1  N 0 1 Y N N N N N -22.545 -10.876 11.692 1.122  1.162  1.431  N05  YRF 27 
YRF N16  N2  N 0 1 N N N N N N -19.468 -11.939 4.711  -6.377 -0.229 -0.300 N16  YRF 28 
YRF N27  N3  N 0 1 N N N N N N -24.840 -12.164 14.352 4.189  1.750  0.073  N27  YRF 29 
YRF N31  N4  N 0 1 N N N N N N -28.358 -14.483 15.474 5.378  -2.647 -0.759 N31  YRF 30 
YRF N34  N5  N 0 1 N N N N N N -30.815 -13.132 16.719 5.879  -5.798 0.187  N34  YRF 31 
YRF O08  O1  O 0 1 N N N N N N -22.335 -8.336  10.481 0.431  -0.931 3.380  O08  YRF 32 
YRF O09  O2  O 0 1 N N N N N N -22.864 -9.362  8.633  -1.614 -0.927 2.507  O09  YRF 33 
YRF O19  O3  O 0 1 N N N N N N -19.872 -11.529 2.158  -6.089 -1.416 -2.405 O19  YRF 34 
YRF O20  O4  O 0 1 N N N N N N -21.706 -12.263 3.460  -8.174 -1.665 -1.096 O20  YRF 35 
YRF O36  O5  O 0 1 N N N N N N -26.909 -11.847 13.516 5.147  0.275  -1.326 O36  YRF 36 
YRF O38  O6  O 0 1 N N N N N N -25.224 -10.524 12.720 4.182  2.137  -2.141 O38  YRF 37 
YRF S17  S1  S 0 1 N N N N N N -20.476 -11.413 3.412  -6.756 -1.591 -1.163 S17  YRF 38 
YRF H121 H1  H 0 0 N N N N N N -20.044 -10.236 8.814  -3.044 1.479  2.278  H121 YRF 39 
YRF H183 H2  H 0 0 N N N N N N -21.280 -9.483  4.579  -4.926 -2.792 -0.160 H183 YRF 40 
YRF H182 H3  H 0 0 N N N N N N -19.851 -9.107  3.558  -6.425 -2.971 0.782  H182 YRF 41 
YRF H181 H4  H 0 0 N N N N N N -21.465 -9.321  2.800  -6.205 -3.894 -0.724 H181 YRF 42 
YRF H011 H5  H 0 0 N N N N N N -23.252 -11.854 16.528 4.301  4.187  -1.050 H011 YRF 43 
YRF H012 H6  H 0 0 N N N N N N -23.023 -13.513 15.879 3.701  5.089  0.363  H012 YRF 44 
YRF H013 H7  H 0 0 N N N N N N -21.714 -12.294 15.712 5.235  4.193  0.465  H013 YRF 45 
YRF H021 H8  H 0 0 N N N N N N -23.118 -10.956 14.241 3.406  2.959  1.597  H021 YRF 46 
YRF H211 H9  H 0 0 N N N N N N -20.972 -13.920 5.715  -4.388 -0.604 -1.996 H211 YRF 47 
YRF H221 H10 H 0 0 N N N N N N -21.988 -13.962 8.093  -2.033 -0.015 -1.614 H221 YRF 48 
YRF H241 H11 H 0 0 N N N N N N -21.140 -14.739 10.174 -1.451 3.000  -1.632 H241 YRF 49 
YRF H251 H12 H 0 0 N N N N N N -21.790 -15.951 12.209 0.287  4.488  -2.491 H251 YRF 50 
YRF H261 H13 H 0 0 N N N N N N -22.695 -14.748 14.173 2.542  4.466  -1.510 H261 YRF 51 
YRF H281 H14 H 0 0 N N N N N N -25.392 -14.136 14.855 3.879  0.218  1.501  H281 YRF 52 
YRF H1   H15 H 0 1 N N N N N N -25.756 -12.897 16.104 5.437  1.090  1.651  H1   YRF 53 
YRF H2   H16 H 0 1 N N N N N N -26.735 -13.580 13.623 6.418  -0.414 0.204  H2   YRF 54 
YRF H301 H17 H 0 0 N N N N N N -29.024 -12.644 14.896 4.667  -2.019 1.115  H301 YRF 55 
YRF H302 H18 H 0 0 N N N N N N -28.667 -13.807 13.575 3.633  -1.586 -0.267 H302 YRF 56 
YRF H321 H19 H 0 0 N N N N N N -30.459 -14.697 14.842 4.171  -4.053 -1.874 H321 YRF 57 
YRF H322 H20 H 0 0 N N N N N N -29.831 -16.094 15.782 3.901  -4.075 -0.077 H322 YRF 58 
YRF H331 H21 H 0 0 N N N N N N -30.036 -14.835 17.773 6.483  -4.830 -1.628 H331 YRF 59 
YRF H351 H22 H 0 0 N N N N N N -27.792 -14.060 17.528 6.253  -3.348 1.091  H351 YRF 60 
YRF H352 H23 H 0 0 N N N N N N -28.391 -12.635 16.613 7.443  -3.044 -0.249 H352 YRF 61 
YRF H051 H24 H 0 0 N N N N N N -22.865 -10.151 12.301 1.889  0.949  1.985  H051 YRF 62 
YRF H161 H25 H 0 0 N N N N N N -19.161 -12.864 4.487  -7.083 0.334  0.053  H161 YRF 63 
YRF H341 H27 H 0 0 N N N N N N -30.870 -12.618 17.575 6.782  -6.238 0.284  H341 YRF 64 
YRF H4   H28 H 0 1 N N N N N N -30.505 -12.526 15.986 5.499  -5.549 1.088  H4   YRF 65 
YRF H5   H30 H 0 1 N N N N N N -22.662 -7.596  9.983  0.098  -1.617 3.974  H5   YRF 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YRF O19 S17  DOUB N N 1  
YRF S17 O20  DOUB N N 2  
YRF S17 C18  SING N N 3  
YRF S17 N16  SING N N 4  
YRF N16 C15  SING N N 5  
YRF C15 C21  DOUB Y N 6  
YRF C15 C13  SING Y N 7  
YRF C21 C22  SING Y N 8  
YRF F14 C13  SING N N 9  
YRF C13 C12  DOUB Y N 10 
YRF C22 C11  DOUB Y N 11 
YRF C12 C11  SING Y N 12 
YRF C11 C10  SING N N 13 
YRF O09 C07  DOUB N N 14 
YRF C07 C06  SING N N 15 
YRF C07 O08  SING N N 16 
YRF C10 C06  DOUB Y N 17 
YRF C10 C23  SING Y N 18 
YRF C06 N05  SING Y N 19 
YRF C23 C24  DOUB Y N 20 
YRF C23 C04  SING Y N 21 
YRF C24 C25  SING Y N 22 
YRF N05 C04  SING Y N 23 
YRF C04 C03  DOUB Y N 24 
YRF C25 C26  DOUB Y N 25 
YRF O38 C37  DOUB N N 26 
YRF C03 C26  SING Y N 27 
YRF C03 C02  SING N N 28 
YRF C37 O36  SING N N 29 
YRF C37 N27  SING N N 30 
YRF O36 C29  SING N N 31 
YRF N27 C02  SING N N 32 
YRF N27 C28  SING N N 33 
YRF C02 C01  SING N N 34 
YRF C29 C30  SING N N 35 
YRF C29 C28  SING N N 36 
YRF C30 N31  SING N N 37 
YRF N31 C32  SING N N 38 
YRF N31 C35  SING N N 39 
YRF C32 C33  SING N N 40 
YRF N34 C33  SING N N 41 
YRF C35 C33  SING N N 42 
YRF C12 H121 SING N N 43 
YRF C18 H183 SING N N 44 
YRF C18 H182 SING N N 45 
YRF C18 H181 SING N N 46 
YRF C01 H011 SING N N 47 
YRF C01 H012 SING N N 48 
YRF C01 H013 SING N N 49 
YRF C02 H021 SING N N 50 
YRF C21 H211 SING N N 51 
YRF C22 H221 SING N N 52 
YRF C24 H241 SING N N 53 
YRF C25 H251 SING N N 54 
YRF C26 H261 SING N N 55 
YRF C28 H281 SING N N 56 
YRF C28 H1   SING N N 57 
YRF C29 H2   SING N N 58 
YRF C30 H301 SING N N 59 
YRF C30 H302 SING N N 60 
YRF C32 H321 SING N N 61 
YRF C32 H322 SING N N 62 
YRF C33 H331 SING N N 63 
YRF C35 H351 SING N N 64 
YRF C35 H352 SING N N 65 
YRF N05 H051 SING N N 66 
YRF N16 H161 SING N N 67 
YRF N34 H341 SING N N 68 
YRF N34 H4   SING N N 69 
YRF O08 H5   SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YRF InChI            InChI                1.06  "InChI=1S/C25H28FN5O6S/c1-13(31-12-16(37-25(31)34)11-30-9-15(27)10-30)17-4-3-5-18-21(23(24(32)33)28-22(17)18)14-6-7-20(19(26)8-14)29-38(2,35)36/h3-8,13,15-16,28-29H,9-12,27H2,1-2H3,(H,32,33)/t13-,16?/m0/s1" 
YRF InChIKey         InChI                1.06  LRAMOIQYSFJRDT-KNVGNIICSA-N                                                                                                                                                                                    
YRF SMILES_CANONICAL CACTVS               3.385 "C[C@H](N1C[C@@H](CN2CC(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(F)c5"                                                                                                                         
YRF SMILES           CACTVS               3.385 "C[CH](N1C[CH](CN2CC(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(F)c5"                                                                                                                            
YRF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)NS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)N"                                                                                                                               
YRF SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)NS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)N"                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           YRF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[5-[(3-azanylazetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YRF "Create component" 2023-06-20 PDBE 
YRF "Initial release"  2024-07-10 RCSB 
# 
