data_ZSF
# 
_chem_comp.id                                    ZSF 
_chem_comp.name                                  
;adenosine 5'-heptaphosphate
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H20 N5 O25 P7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-28 
_chem_comp.pdbx_modified_date                    2024-03-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        827.101 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZSF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8S96 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZSF C10 C1  C 0 1 N N N N N N -40.979 -18.038 14.569 -5.111  1.132  -2.336 C10 ZSF 1  
ZSF C01 C2  C 0 1 N N S N N N -41.242 -19.997 15.981 -6.917  -0.525 -2.942 C01 ZSF 2  
ZSF C02 C3  C 0 1 N N R N N N -40.537 -19.905 17.265 -7.807  -1.394 -2.026 C02 ZSF 3  
ZSF C03 C4  C 0 1 N N R N N N -39.158 -20.049 16.734 -6.963  -1.577 -0.745 C03 ZSF 4  
ZSF C04 C5  C 0 1 Y N N N N N -37.487 -21.228 17.912 -8.093  -0.467 1.219  C04 ZSF 5  
ZSF C05 C6  C 0 1 Y N N N N N -36.714 -19.711 19.255 -9.193  -2.121 2.089  C05 ZSF 6  
ZSF C06 C7  C 0 1 Y N N N N N -37.734 -19.083 18.501 -8.505  -2.619 0.970  C06 ZSF 7  
ZSF C07 C8  C 0 1 Y N N N N N -37.353 -17.220 19.583 -9.379  -4.704 1.383  C07 ZSF 8  
ZSF C08 C9  C 0 1 Y N N N N N -36.068 -18.970 20.175 -9.984  -3.013 2.833  C08 ZSF 9  
ZSF C09 C10 C 0 1 N N R N N N -40.337 -19.305 14.996 -5.640  -0.285 -2.106 C09 ZSF 10 
ZSF N01 N1  N 0 1 Y N N N N N -38.134 -20.084 17.716 -7.823  -1.553 0.440  N01 ZSF 11 
ZSF N02 N2  N 0 1 Y N N N N N -36.554 -21.108 18.865 -8.894  -0.803 2.188  N02 ZSF 12 
ZSF N03 N3  N 0 1 Y N N N N N -38.102 -17.813 18.627 -8.626  -3.905 0.657  N03 ZSF 13 
ZSF N04 N4  N 0 1 Y N N N N N -36.364 -17.714 20.367 -10.044 -4.282 2.443  N04 ZSF 14 
ZSF N05 N5  N 0 1 N N N N N N -35.036 -19.630 20.922 -10.685 -2.580 3.945  N05 ZSF 15 
ZSF O01 O1  O 0 1 N N N N N N -41.333 -21.386 15.654 -6.605  -1.225 -4.148 O01 ZSF 16 
ZSF O02 O2  O 0 1 N N N N N N -39.112 -18.999 15.731 -6.060  -0.449 -0.734 O02 ZSF 17 
ZSF O03 O3  O 0 1 N N N N N N -40.857 -21.018 18.096 -8.069  -2.659 -2.637 O03 ZSF 18 
ZSF O04 O4  O 0 1 N N N N N N -41.718 -17.661 15.685 -3.908  1.319  -1.588 O04 ZSF 19 
ZSF O05 O5  O 0 1 N N N N N N -43.683 -15.941 15.140 -1.860  2.596  -0.545 O05 ZSF 20 
ZSF O06 O6  O 0 1 N N N N N N -43.603 -16.116 12.467 0.416   2.978  0.715  O06 ZSF 21 
ZSF O07 O7  O 0 1 N N N N N N -41.747 -15.302 10.762 2.947   2.378  1.096  O07 ZSF 22 
ZSF O08 O8  O 0 1 N N N N N N -41.373 -17.990 11.099 5.103   1.030  0.427  O08 ZSF 23 
ZSF O09 O9  O 0 1 N N N N N N -39.445 -19.528 12.137 6.533   -1.025 -0.376 O09 ZSF 24 
ZSF O10 O10 O 0 1 N N N N N N -37.163 -19.190 10.851 7.030   -3.606 -0.370 O10 ZSF 25 
ZSF O11 O11 O 0 1 N N N N N N -37.264 -20.139 13.270 8.392   -2.009 -1.953 O11 ZSF 26 
ZSF O12 O12 O 0 1 N N N N N N -37.902 -21.519 11.565 8.692   -1.946 0.552  O12 ZSF 27 
ZSF O13 O13 O 0 1 N N N N N N -39.852 -19.449 9.612  7.583   0.900  0.875  O13 ZSF 28 
ZSF O14 O14 O 0 1 N N N N N N -41.410 -20.536 10.822 6.861   1.327  -1.506 O14 ZSF 29 
ZSF O15 O15 O 0 1 N N N N N N -40.564 -16.742 9.043  5.080   3.554  0.432  O15 ZSF 30 
ZSF O16 O16 O 0 1 N N N N N N -39.430 -16.364 11.008 5.050   2.395  2.674  O16 ZSF 31 
ZSF O17 O17 O 0 1 N N N N N N -44.042 -14.198 10.821 1.702   3.961  2.786  O17 ZSF 32 
ZSF O18 O18 O 0 1 N N N N N N -43.972 -16.322 9.940  2.233   4.707  0.434  O18 ZSF 33 
ZSF O19 O19 O 0 1 N N N N N N -43.035 -13.923 13.694 -1.745  4.265  1.483  O19 ZSF 34 
ZSF O20 O20 O 0 1 N N N N N N -45.222 -14.541 13.627 -0.615  4.785  -0.714 O20 ZSF 35 
ZSF O21 O21 O 0 1 N N N N N N -41.195 -15.218 15.235 -3.970  3.813  -1.206 O21 ZSF 36 
ZSF O22 O22 O 0 1 N N N N N N -42.229 -15.678 17.231 -2.494  2.967  -3.070 O22 ZSF 37 
ZSF O23 O23 O 0 1 N N N N N N -34.974 -18.219 11.739 8.419   -5.645 -1.280 O23 ZSF 38 
ZSF O24 O24 O 0 1 N N N N N N -36.096 -17.008 10.043 8.531   -4.956 1.145  O24 ZSF 39 
ZSF O25 O25 O 0 1 N N N N N N -36.926 -16.987 12.228 6.401   -6.054 0.354  O25 ZSF 40 
ZSF P01 P1  P 0 1 N N N N N N -42.199 -16.102 15.832 -3.078  2.698  -1.594 P01 ZSF 41 
ZSF P02 P2  P 0 1 N N N N N N -43.886 -15.115 13.737 -0.944  3.680  0.214  P02 ZSF 42 
ZSF P03 P3  P 0 1 N N N N N N -43.363 -15.485 10.977 1.833   3.532  1.240  P03 ZSF 43 
ZSF P04 P4  P 0 1 N N N N N N -40.777 -16.596 10.478 4.556   2.365  1.141  P04 ZSF 44 
ZSF P05 P5  P 0 1 N N N N N N -40.521 -19.381 10.911 6.543   0.565  -0.123 P05 ZSF 45 
ZSF P06 P6  P 0 1 N N N N N N -37.925 -20.105 11.962 7.684   -2.142 -0.513 P06 ZSF 46 
ZSF P07 P7  P 0 1 N N N N N N -36.303 -17.857 11.229 7.615   -5.063 -0.013 P07 ZSF 47 
ZSF H1  H1  H 0 1 N N N N N N -40.224 -17.278 14.321 -4.906  1.276  -3.397 H1  ZSF 48 
ZSF H2  H2  H 0 1 N N N N N N -41.633 -18.201 13.700 -5.859  1.856  -2.009 H2  ZSF 49 
ZSF H3  H3  H 0 1 N N N N N N -42.228 -19.512 16.022 -7.409  0.421  -3.167 H3  ZSF 50 
ZSF H4  H4  H 0 1 N N N N N N -40.692 -18.936 17.761 -8.741  -0.879 -1.800 H4  ZSF 51 
ZSF H5  H5  H 0 1 N N N N N N -39.128 -21.008 16.195 -6.404  -2.511 -0.789 H5  ZSF 52 
ZSF H6  H6  H 0 1 N N N N N N -37.688 -22.140 17.370 -7.697  0.525  1.059  H6  ZSF 53 
ZSF H7  H7  H 0 1 N N N N N N -37.581 -16.178 19.750 -9.456  -5.744 1.101  H7  ZSF 54 
ZSF H8  H8  H 0 1 N N N N N N -40.134 -19.955 14.132 -4.875  -1.020 -2.359 H8  ZSF 55 
ZSF H9  H9  H 0 1 N N N N N N -34.625 -18.984 21.566 -10.633 -1.651 4.220  H9  ZSF 56 
ZSF H10 H10 H 0 1 N N N N N N -35.429 -20.399 21.427 -11.228 -3.206 4.450  H10 ZSF 57 
ZSF H11 H11 H 0 1 N N N N N N -41.904 -21.821 16.276 -7.378  -1.454 -4.682 H11 ZSF 58 
ZSF H12 H12 H 0 1 N N N N N N -40.392 -20.942 18.921 -8.545  -2.599 -3.477 H12 ZSF 59 
ZSF H13 H13 H 0 1 N N N N N N -37.019 -21.033 13.478 7.790   -2.126 -2.700 H13 ZSF 60 
ZSF H14 H14 H 0 1 N N N N N N -41.290 -20.964 9.983  6.218   1.153  -2.207 H14 ZSF 61 
ZSF H15 H15 H 0 1 N N N N N N -38.803 -16.371 10.294 4.743   1.643  3.200  H15 ZSF 62 
ZSF H16 H16 H 0 1 N N N N N N -44.672 -14.256 10.112 1.443   3.239  3.374  H16 ZSF 63 
ZSF H17 H17 H 0 1 N N N N N N -43.578 -13.148 13.610 -1.993  3.595  2.134  H17 ZSF 64 
ZSF H18 H18 H 0 1 N N N N N N -41.609 -14.970 17.361 -1.899  2.274  -3.390 H18 ZSF 65 
ZSF H19 H19 H 0 1 N N N N N N -34.306 -17.825 11.191 7.879   -5.742 -2.077 H19 ZSF 66 
ZSF H20 H20 H 0 1 N N N N N N -37.036 -16.116 11.865 6.680   -6.952 0.581  H20 ZSF 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZSF O15 P04 DOUB N N 1  
ZSF O13 P05 DOUB N N 2  
ZSF O18 P03 DOUB N N 3  
ZSF O24 P07 DOUB N N 4  
ZSF P04 O07 SING N N 5  
ZSF P04 O16 SING N N 6  
ZSF P04 O08 SING N N 7  
ZSF O07 P03 SING N N 8  
ZSF O17 P03 SING N N 9  
ZSF O14 P05 SING N N 10 
ZSF O10 P07 SING N N 11 
ZSF O10 P06 SING N N 12 
ZSF P05 O08 SING N N 13 
ZSF P05 O09 SING N N 14 
ZSF P03 O06 SING N N 15 
ZSF P07 O23 SING N N 16 
ZSF P07 O25 SING N N 17 
ZSF O12 P06 DOUB N N 18 
ZSF P06 O09 SING N N 19 
ZSF P06 O11 SING N N 20 
ZSF O06 P02 SING N N 21 
ZSF O20 P02 DOUB N N 22 
ZSF O19 P02 SING N N 23 
ZSF P02 O05 SING N N 24 
ZSF C10 C09 SING N N 25 
ZSF C10 O04 SING N N 26 
ZSF C09 O02 SING N N 27 
ZSF C09 C01 SING N N 28 
ZSF O05 P01 SING N N 29 
ZSF O21 P01 DOUB N N 30 
ZSF O01 C01 SING N N 31 
ZSF O04 P01 SING N N 32 
ZSF O02 C03 SING N N 33 
ZSF P01 O22 SING N N 34 
ZSF C01 C02 SING N N 35 
ZSF C03 C02 SING N N 36 
ZSF C03 N01 SING N N 37 
ZSF C02 O03 SING N N 38 
ZSF N01 C04 SING Y N 39 
ZSF N01 C06 SING Y N 40 
ZSF C04 N02 DOUB Y N 41 
ZSF C06 N03 DOUB Y N 42 
ZSF C06 C05 SING Y N 43 
ZSF N03 C07 SING Y N 44 
ZSF N02 C05 SING Y N 45 
ZSF C05 C08 DOUB Y N 46 
ZSF C07 N04 DOUB Y N 47 
ZSF C08 N04 SING Y N 48 
ZSF C08 N05 SING N N 49 
ZSF C10 H1  SING N N 50 
ZSF C10 H2  SING N N 51 
ZSF C01 H3  SING N N 52 
ZSF C02 H4  SING N N 53 
ZSF C03 H5  SING N N 54 
ZSF C04 H6  SING N N 55 
ZSF C07 H7  SING N N 56 
ZSF C09 H8  SING N N 57 
ZSF N05 H9  SING N N 58 
ZSF N05 H10 SING N N 59 
ZSF O01 H11 SING N N 60 
ZSF O03 H12 SING N N 61 
ZSF O11 H13 SING N N 62 
ZSF O14 H14 SING N N 63 
ZSF O16 H15 SING N N 64 
ZSF O17 H16 SING N N 65 
ZSF O19 H17 SING N N 66 
ZSF O22 H18 SING N N 67 
ZSF O23 H19 SING N N 68 
ZSF O25 H20 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZSF SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O"                                                                                                                                                                                                 
ZSF InChI            InChI                1.06  "InChI=1S/C10H20N5O25P7/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(34-10)1-33-42(21,22)36-44(25,26)38-46(29,30)40-47(31,32)39-45(27,28)37-43(23,24)35-41(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H,25,26)(H,27,28)(H,29,30)(H,31,32)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1" 
ZSF InChIKey         InChI                1.06  CLTPWCJSZCAWDP-KQYNXXCUSA-N                                                                                                                                                                                                                                                                      
ZSF SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O"                                                                                                                                                                 
ZSF SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O"                                                                                                                                                                       
ZSF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N"                                                                                                                                                                         
ZSF SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N"                                                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZSF "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-hydroxy{[(R)-hydroxy{[(R)-hydroxy{[(S)-hydroxy{[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]oxy}phosphoryl]oxy}phosphoryl]oxy}phosphoryl]adenosine"                                              
ZSF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [oxidanyl-[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl]oxy-phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZSF "Create component" 2023-03-28 RCSB 
ZSF "Initial release"  2024-04-03 RCSB 
# 
