data_5VG
# 
_chem_comp.id                                    5VG 
_chem_comp.name                                  "~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-5-(methylaminomethyl)-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H24 Cl F N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-12-09 
_chem_comp.pdbx_modified_date                    2016-03-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        446.906 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5VG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5F4P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5VG C10  C1  C  0 1 Y N N -16.868 -59.748 22.178 3.019  -2.809 0.924  C10  5VG 1  
5VG C13  C2  C  0 1 N N R -15.049 -59.426 18.716 1.755  0.805  0.458  C13  5VG 2  
5VG C15  C3  C  0 1 N N N -13.417 -57.705 18.004 -0.612 0.383  0.855  C15  5VG 3  
5VG C17  C4  C  0 1 N N N -13.035 -56.246 17.843 -2.026 0.303  0.384  C17  5VG 4  
5VG C20  C5  C  0 1 Y N N -11.298 -54.561 17.072 -4.339 -0.021 0.828  C20  5VG 5  
5VG C21  C6  C  0 1 Y N N -11.508 -53.574 18.044 -4.667 -0.373 -0.474 C21  5VG 6  
5VG C22  C7  C  0 1 Y N N -11.068 -52.259 17.810 -5.989 -0.353 -0.883 C22  5VG 7  
5VG C24  C8  C  0 1 Y N N -10.410 -51.934 16.597 -6.984 0.018  0.008  C24  5VG 8  
5VG C26  C9  C  0 1 Y N N -10.197 -52.911 15.633 -6.658 0.369  1.306  C26  5VG 9  
5VG N    N1  N  0 1 N N N -19.207 -59.052 23.742 5.912  -4.069 0.134  N    5VG 10 
5VG C    C10 C  0 1 N N N -19.705 -59.612 24.934 6.689  -5.283 -0.150 C    5VG 11 
5VG C00  C11 C  0 1 N N N -19.354 -60.001 22.680 4.593  -4.126 -0.510 C00  5VG 12 
5VG CL25 CL1 CL 0 0 N N N -9.866  -50.341 16.297 -8.642 0.043  -0.506 CL25 5VG 13 
5VG N01  N2  N  0 1 N N N -13.116 -62.539 17.570 6.262  4.783  -0.999 N01  5VG 14 
5VG C02  C12 C  0 1 N N N -13.336 -62.156 16.453 5.536  3.992  -0.141 C02  5VG 15 
5VG N03  N3  N  0 1 N N N -14.607 -61.468 16.280 4.473  3.259  -0.614 N03  5VG 16 
5VG C04  C13 C  0 1 N N N -15.589 -61.293 17.206 3.700  2.416  0.300  C04  5VG 17 
5VG C05  C14 C  0 1 N N R -15.835 -59.841 17.521 2.582  1.714  -0.475 C05  5VG 18 
5VG C06  C15 C  0 1 N N N -17.267 -59.604 17.863 3.167  0.707  -1.488 C06  5VG 19 
5VG C07  C16 C  0 1 Y N N -17.334 -59.671 19.377 3.225  -0.611 -0.746 C07  5VG 20 
5VG C08  C17 C  0 1 Y N N -18.427 -59.813 20.260 3.929  -1.770 -1.030 C08  5VG 21 
5VG C09  C18 C  0 1 Y N N -18.178 -59.850 21.683 3.826  -2.867 -0.197 C09  5VG 22 
5VG C11  C19 C  0 1 Y N N -15.748 -59.606 21.271 2.313  -1.656 1.206  C11  5VG 23 
5VG C12  C20 C  0 1 Y N N -16.002 -59.568 19.891 2.414  -0.555 0.372  C12  5VG 24 
5VG N14  N4  N  0 1 N N N -14.692 -58.052 18.572 0.367  0.727  -0.005 N14  5VG 25 
5VG O16  O1  O  0 1 N N N -12.631 -58.601 17.646 -0.343 0.138  2.013  O16  5VG 26 
5VG O18  O2  O  0 1 N N N -13.828 -55.362 18.202 -2.295 0.549  -0.774 O18  5VG 27 
5VG N19  N5  N  0 1 N N N -11.739 -55.918 17.273 -3.005 -0.041 1.244  N19  5VG 28 
5VG C27  C21 C  0 1 Y N N -10.648 -54.242 15.877 -5.339 0.355  1.717  C27  5VG 29 
5VG N28  N6  N  0 1 N N N -12.475 -62.411 15.622 5.855  3.936  1.121  N28  5VG 30 
5VG F23  F1  F  0 1 N N N -11.278 -51.286 18.769 -6.309 -0.695 -2.150 F23  5VG 31 
5VG H1   H1  H  0 1 N N N -16.694 -59.776 23.244 2.937  -3.666 1.576  H1   5VG 32 
5VG H2   H2  H  0 1 N N N -14.167 -60.069 18.852 1.792  1.179  1.481  H2   5VG 33 
5VG H3   H3  H  0 1 N N N -12.006 -53.822 18.970 -3.891 -0.661 -1.168 H3   5VG 34 
5VG H4   H4  H  0 1 N N N -9.695  -52.666 14.709 -7.435 0.661  1.997  H4   5VG 35 
5VG H5   H5  H  0 1 N N N -18.240 -58.826 23.857 6.416  -3.242 -0.148 H5   5VG 36 
5VG H7   H7  H  0 1 N N N -19.595 -58.887 25.754 6.153  -6.154 0.227  H7   5VG 37 
5VG H8   H8  H  0 1 N N N -20.769 -59.861 24.805 6.830  -5.381 -1.227 H8   5VG 38 
5VG H9   H9  H  0 1 N N N -19.141 -60.525 25.174 7.661  -5.215 0.338  H9   5VG 39 
5VG H10  H10 H  0 1 N N N -20.304 -59.820 22.156 4.719  -4.216 -1.589 H10  5VG 40 
5VG H11  H11 H  0 1 N N N -19.353 -61.019 23.096 4.042  -4.989 -0.136 H11  5VG 41 
5VG H12  H12 H  0 1 N N N -13.785 -62.375 18.295 6.025  4.825  -1.939 H12  5VG 42 
5VG H13  H13 H  0 1 N N N -12.264 -63.022 17.774 7.012  5.300  -0.665 H13  5VG 43 
5VG H14  H14 H  0 1 N N N -14.779 -61.078 15.375 4.236  3.301  -1.554 H14  5VG 44 
5VG H15  H15 H  0 1 N N N -16.520 -61.732 16.819 4.355  1.669  0.748  H15  5VG 45 
5VG H16  H16 H  0 1 N N N -15.296 -61.810 18.132 3.264  3.035  1.084  H16  5VG 46 
5VG H17  H17 H  0 1 N N N -15.552 -59.223 16.656 1.945  2.443  -0.977 H17  5VG 47 
5VG H18  H18 H  0 1 N N N -17.589 -58.615 17.507 2.514  0.623  -2.357 H18  5VG 48 
5VG H19  H19 H  0 1 N N N -17.904 -60.381 17.415 4.167  1.014  -1.793 H19  5VG 49 
5VG H20  H20 H  0 1 N N N -19.434 -59.893 19.878 4.558  -1.817 -1.906 H20  5VG 50 
5VG H21  H21 H  0 1 N N N -14.739 -59.531 21.648 1.679  -1.613 2.079  H21  5VG 51 
5VG H22  H22 H  0 1 N N N -15.324 -57.335 18.864 0.153  0.923  -0.930 H22  5VG 52 
5VG H23  H23 H  0 1 N N N -11.128 -56.665 17.009 -2.783 -0.302 2.152  H23  5VG 53 
5VG H24  H24 H  0 1 N N N -10.486 -55.008 15.133 -5.087 0.629  2.730  H24  5VG 54 
5VG H25  H25 H  0 1 N N N -11.706 -62.911 16.020 6.605  4.452  1.456  H25  5VG 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5VG N28  C02 DOUB N N 1  
5VG C26  C27 DOUB Y N 2  
5VG C26  C24 SING Y N 3  
5VG C27  C20 SING Y N 4  
5VG N03  C02 SING N N 5  
5VG N03  C04 SING N N 6  
5VG CL25 C24 SING N N 7  
5VG C02  N01 SING N N 8  
5VG C24  C22 DOUB Y N 9  
5VG C20  N19 SING N N 10 
5VG C20  C21 DOUB Y N 11 
5VG C04  C05 SING N N 12 
5VG N19  C17 SING N N 13 
5VG C05  C06 SING N N 14 
5VG C05  C13 SING N N 15 
5VG O16  C15 DOUB N N 16 
5VG C22  C21 SING Y N 17 
5VG C22  F23 SING N N 18 
5VG C17  C15 SING N N 19 
5VG C17  O18 DOUB N N 20 
5VG C06  C07 SING N N 21 
5VG C15  N14 SING N N 22 
5VG N14  C13 SING N N 23 
5VG C13  C12 SING N N 24 
5VG C07  C12 DOUB Y N 25 
5VG C07  C08 SING Y N 26 
5VG C12  C11 SING Y N 27 
5VG C08  C09 DOUB Y N 28 
5VG C11  C10 DOUB Y N 29 
5VG C09  C10 SING Y N 30 
5VG C09  C00 SING N N 31 
5VG C00  N   SING N N 32 
5VG N    C   SING N N 33 
5VG C10  H1  SING N N 34 
5VG C13  H2  SING N N 35 
5VG C21  H3  SING N N 36 
5VG C26  H4  SING N N 37 
5VG N    H5  SING N N 38 
5VG C    H7  SING N N 39 
5VG C    H8  SING N N 40 
5VG C    H9  SING N N 41 
5VG C00  H10 SING N N 42 
5VG C00  H11 SING N N 43 
5VG N01  H12 SING N N 44 
5VG N01  H13 SING N N 45 
5VG N03  H14 SING N N 46 
5VG C04  H15 SING N N 47 
5VG C04  H16 SING N N 48 
5VG C05  H17 SING N N 49 
5VG C06  H18 SING N N 50 
5VG C06  H19 SING N N 51 
5VG C08  H20 SING N N 52 
5VG C11  H21 SING N N 53 
5VG N14  H22 SING N N 54 
5VG N19  H23 SING N N 55 
5VG C27  H24 SING N N 56 
5VG N28  H25 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5VG InChI            InChI                1.03  "InChI=1S/C21H24ClFN6O2/c1-26-9-11-2-4-15-12(6-11)7-13(10-27-21(24)25)18(15)29-20(31)19(30)28-14-3-5-16(22)17(23)8-14/h2-6,8,13,18,26H,7,9-10H2,1H3,(H,28,30)(H,29,31)(H4,24,25,27)/t13-,18-/m1/s1" 
5VG InChIKey         InChI                1.03  ZUJVWZRAMJMXLF-FZKQIMNGSA-N                                                                                                                                                                         
5VG SMILES_CANONICAL CACTVS               3.385 "CNCc1ccc2[C@H](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)[C@@H](CNC(N)=N)Cc2c1"                                                                                                                                  
5VG SMILES           CACTVS               3.385 "CNCc1ccc2[CH](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)[CH](CNC(N)=N)Cc2c1"                                                                                                                                     
5VG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "[H]/N=C(/N)\NC[C@H]1Cc2cc(ccc2[C@@H]1NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CNC"                                                                                                                              
5VG SMILES           "OpenEye OEToolkits" 2.0.4 "CNCc1ccc2c(c1)CC(C2NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CNC(=N)N"                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5VG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-5-(methylaminomethyl)-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5VG "Create component" 2015-12-09 RCSB 
5VG "Initial release"  2016-03-30 RCSB 
# 
