data_AFG
#

_chem_comp.id                                   AFG
_chem_comp.name                                 "N-(5'-PHOSPHO-2'-DEOXYGUANOSIN-8-YL)-2-AMINOFLUORENE"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C23 H23 N6 O7 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-09-16
_chem_comp.pdbx_modified_date                   2012-01-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       526.438
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    AFG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AFG  OP3     O3P   O  0  1  N  Y  N  ?  ?  ?   3.394   4.446   2.772  OP3     AFG   1  
AFG  P       P     P  0  1  N  N  N  ?  ?  ?   3.309   4.320   1.169  P       AFG   2  
AFG  OP1     O1P   O  0  1  N  N  N  ?  ?  ?   1.972   4.759   0.710  OP1     AFG   3  
AFG  OP2     O2P   O  0  1  N  N  N  ?  ?  ?   4.439   5.249   0.497  OP2     AFG   4  
AFG  "O5'"   O5*   O  0  1  N  N  N  ?  ?  ?   3.548   2.787   0.738  "O5'"   AFG   5  
AFG  N9      N9    N  0  1  Y  N  N  ?  ?  ?   1.517  -1.967  -0.243  N9      AFG   6  
AFG  C4      C4    C  0  1  Y  N  N  ?  ?  ?   1.390  -3.276   0.149  C4      AFG   7  
AFG  N3      N3    N  0  1  Y  N  N  ?  ?  ?   2.261  -4.257   0.413  N3      AFG   8  
AFG  C2      C2    C  0  1  Y  N  N  ?  ?  ?   1.850  -5.451   0.779  C2      AFG   9  
AFG  N2      N2    N  0  1  N  N  N  ?  ?  ?   2.780  -6.426   1.039  N2      AFG  10  
AFG  N1      N1    N  0  1  Y  N  N  ?  ?  ?   0.526  -5.747   0.907  N1      AFG  11  
AFG  C6      C6    C  0  1  Y  N  N  ?  ?  ?  -0.412  -4.806   0.656  C6      AFG  12  
AFG  O6      O6    O  0  1  N  N  N  ?  ?  ?  -1.599  -5.062   0.768  O6      AFG  13  
AFG  C5      C5    C  0  1  Y  N  N  ?  ?  ?   0.018  -3.519   0.262  C5      AFG  14  
AFG  N7      N7    N  0  1  Y  N  N  ?  ?  ?  -0.627  -2.367  -0.059  N7      AFG  15  
AFG  C8      C8    C  0  1  Y  N  N  ?  ?  ?   0.256  -1.448  -0.358  C8      AFG  16  
AFG  C31     C31   C  0  1  Y  N  N  ?  ?  ?  -1.781   1.279  -1.604  C31     AFG  17  
AFG  C32     C32   C  0  1  Y  N  N  ?  ?  ?  -1.363   0.299  -0.710  C32     AFG  18  
AFG  C33     C33   C  0  1  Y  N  N  ?  ?  ?  -2.264  -0.234   0.206  C33     AFG  19  
AFG  C34     C34   C  0  1  Y  N  N  ?  ?  ?  -3.568   0.208   0.226  C34     AFG  20  
AFG  C35     C35   C  0  1  Y  N  N  ?  ?  ?  -3.993   1.190  -0.667  C35     AFG  21  
AFG  C36     C36   C  0  1  Y  N  N  ?  ?  ?  -3.085   1.723  -1.585  C36     AFG  22  
AFG  C37     C37   C  0  1  N  N  N  ?  ?  ?  -4.752  -0.170   1.083  C37     AFG  23  
AFG  C38     C38   C  0  1  Y  N  N  ?  ?  ?  -5.901   0.682   0.604  C38     AFG  24  
AFG  C39     C39   C  0  1  Y  N  N  ?  ?  ?  -5.429   1.481  -0.433  C39     AFG  25  
AFG  C40     C40   C  0  1  Y  N  N  ?  ?  ?  -7.217   0.773   1.008  C40     AFG  26  
AFG  C41     C41   C  0  1  Y  N  N  ?  ?  ?  -8.074   1.660   0.381  C41     AFG  27  
AFG  C42     C42   C  0  1  Y  N  N  ?  ?  ?  -7.614   2.457  -0.652  C42     AFG  28  
AFG  C43     C43   C  0  1  Y  N  N  ?  ?  ?  -6.299   2.374  -1.061  C43     AFG  29  
AFG  N29     N29   N  0  1  N  N  N  ?  ?  ?  -0.041  -0.149  -0.732  N29     AFG  30  
AFG  "C2'"   C2*   C  0  1  N  N  N  ?  ?  ?   3.008  -1.079  -2.003  "C2'"   AFG  31  
AFG  "C5'"   C5*   C  0  1  N  N  N  ?  ?  ?   3.431   2.331  -0.611  "C5'"   AFG  32  
AFG  "C4'"   C4*   C  0  1  N  N  N  ?  ?  ?   3.721   0.830  -0.668  "C4'"   AFG  33  
AFG  "O4'"   O4*   O  0  1  N  N  N  ?  ?  ?   2.696   0.092   0.033  "O4'"   AFG  34  
AFG  "C1'"   C1*   C  0  1  N  N  N  ?  ?  ?   2.773  -1.254  -0.486  "C1'"   AFG  35  
AFG  "C3'"   C3*   C  0  1  N  N  N  ?  ?  ?   3.645   0.323  -2.125  "C3'"   AFG  36  
AFG  "O3'"   O3*   O  0  1  N  N  N  ?  ?  ?   4.954   0.229  -2.692  "O3'"   AFG  37  
AFG  HOP3    3HOP  H  0  0  N  N  N  ?  ?  ?   3.260   5.345   3.103  HOP3    AFG  38  
AFG  HOP2    2HOP  H  0  0  N  N  N  ?  ?  ?   5.343   5.017   0.754  HOP2    AFG  39  
AFG  HN21    1HN2  H  0  0  N  N  N  ?  ?  ?   3.726  -6.229   0.952  HN21    AFG  40  
AFG  HN22    2HN2  H  0  0  N  N  N  ?  ?  ?   2.492  -7.312   1.310  HN22    AFG  41  
AFG  HN1     HN1   H  0  1  N  N  N  ?  ?  ?   0.255  -6.638   1.179  HN1     AFG  42  
AFG  H31     H31   H  0  1  N  N  N  ?  ?  ?  -1.080   1.696  -2.312  H31     AFG  43  
AFG  H33     H33   H  0  1  N  N  N  ?  ?  ?  -1.941  -0.996   0.900  H33     AFG  44  
AFG  H36     H36   H  0  1  N  N  N  ?  ?  ?  -3.406   2.484  -2.281  H36     AFG  45  
AFG  H371    1H37  H  0  0  N  N  N  ?  ?  ?  -4.987  -1.226   0.952  H371    AFG  46  
AFG  H372    2H37  H  0  0  N  N  N  ?  ?  ?  -4.539   0.041   2.131  H372    AFG  47  
AFG  H40     H40   H  0  1  N  N  N  ?  ?  ?  -7.578   0.151   1.813  H40     AFG  48  
AFG  H41     H41   H  0  1  N  N  N  ?  ?  ?  -9.104   1.730   0.698  H41     AFG  49  
AFG  H42     H42   H  0  1  N  N  N  ?  ?  ?  -8.286   3.148  -1.139  H42     AFG  50  
AFG  H43     H43   H  0  1  N  N  N  ?  ?  ?  -5.944   2.999  -1.867  H43     AFG  51  
AFG  H29     H29   H  0  1  N  N  N  ?  ?  ?   0.670   0.450  -1.010  H29     AFG  52  
AFG  "H2'"   1H2*  H  0  1  N  N  N  ?  ?  ?   3.691  -1.844  -2.374  "H2'"   AFG  53  
AFG  "H2''"  2H2*  H  0  0  N  N  N  ?  ?  ?   2.061  -1.117  -2.542  "H2''"  AFG  54  
AFG  "H5'"   1H5*  H  0  1  N  N  N  ?  ?  ?   2.420   2.520  -0.972  "H5'"   AFG  55  
AFG  "H5''"  2H5*  H  0  0  N  N  N  ?  ?  ?   4.146   2.863  -1.238  "H5''"  AFG  56  
AFG  "H4'"   H4*   H  0  1  N  N  N  ?  ?  ?   4.701   0.616  -0.241  "H4'"   AFG  57  
AFG  "H1'"   H1*   H  0  1  N  N  N  ?  ?  ?   3.607  -1.789  -0.032  "H1'"   AFG  58  
AFG  "H3'"   H3*   H  0  1  N  N  N  ?  ?  ?   3.014   0.978  -2.726  "H3'"   AFG  59  
AFG  "HO3'"  H3T   H  0  0  N  Y  N  ?  ?  ?   4.971  -0.140  -3.585  "HO3'"  AFG  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AFG  OP3    P       SING  N  N   1  
AFG  OP3    HOP3    SING  N  N   2  
AFG  P      OP1     DOUB  N  N   3  
AFG  P      OP2     SING  N  N   4  
AFG  P      "O5'"   SING  N  N   5  
AFG  OP2    HOP2    SING  N  N   6  
AFG  "O5'"  "C5'"   SING  N  N   7  
AFG  N9     C4      SING  Y  N   8  
AFG  N9     C8      SING  Y  N   9  
AFG  N9     "C1'"   SING  N  N  10  
AFG  C4     N3      SING  Y  N  11  
AFG  C4     C5      DOUB  Y  N  12  
AFG  N3     C2      DOUB  Y  N  13  
AFG  C2     N2      SING  N  N  14  
AFG  C2     N1      SING  Y  N  15  
AFG  N2     HN21    SING  N  N  16  
AFG  N2     HN22    SING  N  N  17  
AFG  N1     C6      SING  Y  N  18  
AFG  N1     HN1     SING  N  N  19  
AFG  C6     O6      DOUB  N  N  20  
AFG  C6     C5      SING  Y  N  21  
AFG  C5     N7      SING  Y  N  22  
AFG  N7     C8      DOUB  Y  N  23  
AFG  C8     N29     SING  N  N  24  
AFG  C31    C32     DOUB  Y  N  25  
AFG  C31    C36     SING  Y  N  26  
AFG  C31    H31     SING  N  N  27  
AFG  C32    C33     SING  Y  N  28  
AFG  C32    N29     SING  N  N  29  
AFG  C33    C34     DOUB  Y  N  30  
AFG  C33    H33     SING  N  N  31  
AFG  C34    C35     SING  Y  N  32  
AFG  C34    C37     SING  N  N  33  
AFG  C35    C36     DOUB  Y  N  34  
AFG  C35    C39     SING  Y  N  35  
AFG  C36    H36     SING  N  N  36  
AFG  C37    C38     SING  N  N  37  
AFG  C37    H371    SING  N  N  38  
AFG  C37    H372    SING  N  N  39  
AFG  C38    C39     DOUB  Y  N  40  
AFG  C38    C40     SING  Y  N  41  
AFG  C39    C43     SING  Y  N  42  
AFG  C40    C41     DOUB  Y  N  43  
AFG  C40    H40     SING  N  N  44  
AFG  C41    C42     SING  Y  N  45  
AFG  C41    H41     SING  N  N  46  
AFG  C42    C43     DOUB  Y  N  47  
AFG  C42    H42     SING  N  N  48  
AFG  C43    H43     SING  N  N  49  
AFG  N29    H29     SING  N  N  50  
AFG  "C2'"  "C1'"   SING  N  N  51  
AFG  "C2'"  "C3'"   SING  N  N  52  
AFG  "C2'"  "H2'"   SING  N  N  53  
AFG  "C2'"  "H2''"  SING  N  N  54  
AFG  "C5'"  "C4'"   SING  N  N  55  
AFG  "C5'"  "H5'"   SING  N  N  56  
AFG  "C5'"  "H5''"  SING  N  N  57  
AFG  "C4'"  "O4'"   SING  N  N  58  
AFG  "C4'"  "C3'"   SING  N  N  59  
AFG  "C4'"  "H4'"   SING  N  N  60  
AFG  "O4'"  "C1'"   SING  N  N  61  
AFG  "C1'"  "H1'"   SING  N  N  62  
AFG  "C3'"  "O3'"   SING  N  N  63  
AFG  "C3'"  "H3'"   SING  N  N  64  
AFG  "O3'"  "HO3'"  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AFG  InChI             InChI                 1.03   "InChI=1S/C23H23N6O7P/c24-22-27-20-19(21(31)28-22)26-23(29(20)18-9-16(30)17(36-18)10-35-37(32,33)34)25-13-5-6-15-12(8-13)7-11-3-1-2-4-14(11)15/h1-6,8,16-18,30H,7,9-10H2,(H,25,26)(H2,32,33,34)(H3,24,27,28,31)"  
AFG  InChIKey          InChI                 1.03   FAMJCWJWMDNVLX-UHFFFAOYSA-N  
AFG  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(C3CC(O)C(CO[P](O)(O)=O)O3)c(Nc4ccc5c(Cc6ccccc56)c4)nc2C(=O)N1"  
AFG  SMILES            CACTVS                3.385  "NC1=Nc2n(C3CC(O)C(CO[P](O)(O)=O)O3)c(Nc4ccc5c(Cc6ccccc56)c4)nc2C(=O)N1"  
AFG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "c1ccc-2c(c1)Cc3c2ccc(c3)Nc4nc5c(n4C6CC(C(O6)COP(=O)(O)O)O)N=C(NC5=O)N"  
AFG  SMILES            "OpenEye OEToolkits"  1.7.5  "c1ccc-2c(c1)Cc3c2ccc(c3)Nc4nc5c(n4C6CC(C(O6)COP(=O)(O)O)O)N=C(NC5=O)N"  
#
_pdbx_chem_comp_identifier.comp_id          AFG
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.5.0
_pdbx_chem_comp_identifier.identifier       "[(2S,3R,5S)-5-[2-amino-8-(9H-fluoren-2-ylamino)-6-oxo-1H-purin-9-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AFG  "Create component"      2004-09-16  RCSB  
AFG  "Modify aromatic_flag"  2011-06-04  RCSB  
AFG  "Modify descriptor"     2011-06-04  RCSB  
AFG  "Modify descriptor"     2012-01-05  RCSB  
AFG  "Modify coordinates"    2012-01-05  RCSB  
##
