data_FDG
# 
_chem_comp.id                                    FDG 
_chem_comp.name                                  "2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7,9-dihydro-1H-purine-6,8-dione" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H13 F N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               DG 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-01-06 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        381.211 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     FDG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3KTU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
FDG P      P      P 0 1 N N N 26.641 23.995 37.251 4.954  -1.240 -0.031 P      FDG 1  
FDG N1     N1     N 0 1 N N N 20.043 24.174 30.131 -5.318 -1.235 -0.469 N1     FDG 2  
FDG C2     C2     C 0 1 N N N 20.330 25.382 30.875 -4.601 -0.850 -1.560 C2     FDG 3  
FDG N2     N2     N 0 1 N N N 20.262 26.599 30.301 -5.158 -0.982 -2.807 N2     FDG 4  
FDG N3     N3     N 0 1 N N N 20.675 25.268 32.167 -3.386 -0.357 -1.450 N3     FDG 5  
FDG C4     C4     C 0 1 N N N 20.765 24.086 32.804 -2.805 -0.212 -0.254 C4     FDG 6  
FDG C5     C5     C 0 1 N N N 20.501 22.853 32.154 -3.494 -0.589 0.893  C5     FDG 7  
FDG C6     C6     C 0 1 N N N 20.137 22.898 30.800 -4.788 -1.114 0.768  C6     FDG 8  
FDG O6     O6     O 0 1 N N N 19.902 21.835 30.170 -5.421 -1.455 1.755  O6     FDG 9  
FDG N7     N7     N 0 1 N N N 20.690 21.859 33.074 -2.653 -0.327 1.978  N7     FDG 10 
FDG C8     C8     C 0 1 N N N 21.061 22.498 34.225 -1.504 0.186  1.496  C8     FDG 11 
FDG O8     O8     O 0 1 N N N 21.334 21.902 35.289 -0.549 0.527  2.169  O8     FDG 12 
FDG N9     N9     N 0 1 N N N 21.101 23.825 34.051 -1.576 0.264  0.154  N9     FDG 13 
FDG "C1'"  "C1'"  C 0 1 N N R 21.466 24.879 34.994 -0.522 0.770  -0.729 "C1'"  FDG 14 
FDG "C2'"  "C2'"  C 0 1 N N S 20.804 25.041 36.343 -0.290 2.270  -0.462 "C2'"  FDG 15 
FDG "F2'"  "F2'"  F 0 1 N N N 20.692 23.724 36.873 -1.103 2.712  0.588  "F2'"  FDG 16 
FDG "C3'"  "C3'"  C 0 1 N N R 21.827 25.900 37.072 1.203  2.358  -0.065 "C3'"  FDG 17 
FDG "O3'"  "O3'"  O 0 1 N N N 21.544 27.318 36.796 1.822  3.502  -0.658 "O3'"  FDG 18 
FDG "C4'"  "C4'"  C 0 1 N N R 23.157 25.485 36.437 1.776  1.048  -0.662 "C4'"  FDG 19 
FDG "O4'"  "O4'"  O 0 1 N N N 22.765 24.504 35.468 0.714  0.091  -0.454 "O4'"  FDG 20 
FDG "C5'"  "C5'"  C 0 1 N N N 24.166 24.885 37.386 3.040  0.621  0.088  "C5'"  FDG 21 
FDG "O5'"  "O5'"  O 0 1 N N N 25.220 24.335 36.593 3.611  -0.521 -0.553 "O5'"  FDG 22 
FDG OP1    OP1    O 0 1 N N N 26.783 22.543 37.515 4.791  -1.616 1.391  OP1    FDG 23 
FDG OP3    OP3    O 0 1 N Y N 27.724 24.722 36.543 5.231  -2.562 -0.908 OP3    FDG 24 
FDG HN1    HN1    H 0 1 N N N 19.783 24.223 29.167 -6.213 -1.592 -0.579 HN1    FDG 25 
FDG HN2    HN2    H 0 1 N N N 20.469 27.417 30.838 -6.053 -1.344 -2.902 HN2    FDG 26 
FDG HN2A   HN2A   H 0 0 N N N 20.005 26.684 29.338 -4.658 -0.712 -3.593 HN2A   FDG 27 
FDG HN7    HN7    H 0 1 N N N 20.580 20.875 32.935 -2.859 -0.487 2.912  HN7    FDG 28 
FDG "H1'"  "H1'"  H 0 1 N N N 21.242 25.778 34.401 -0.807 0.619  -1.771 "H1'"  FDG 29 
FDG "H2'"  "H2'"  H 0 1 N N N 19.803 25.495 36.383 -0.483 2.853  -1.363 "H2'"  FDG 30 
FDG "H3'"  "H3'"  H 0 1 N N N 21.823 25.771 38.164 1.317  2.375  1.019  "H3'"  FDG 31 
FDG "HO3'" "HO3'" H 0 0 N Y N 22.179 27.862 37.248 1.436  4.345  -0.384 "HO3'" FDG 32 
FDG "H4'"  "H4'"  H 0 1 N N N 23.674 26.369 36.036 1.982  1.168  -1.726 "H4'"  FDG 33 
FDG "H5'"  "H5'"  H 0 1 N N N 24.562 25.660 38.059 3.760  1.439  0.081  "H5'"  FDG 34 
FDG "H5'A" "H5'A" H 0 0 N N N 23.696 24.097 37.992 2.784  0.370  1.117  "H5'A" FDG 35 
FDG OP2    OP2    O 0 1 N N N 26.939 25.650 36.888 6.197  -0.227 -0.179 OP2    FDG 36 
FDG HOP3   HOP3   H 0 0 N N N 28.426 24.118 36.332 6.026  -3.046 -0.647 HOP3   FDG 37 
FDG HOP2   HOP2   H 0 0 N N N 27.817 25.883 37.166 6.363  0.062  -1.087 HOP2   FDG 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
FDG P     "O5'"  SING N N 1  
FDG P     OP1    DOUB N N 2  
FDG P     OP2    SING N N 3  
FDG N1    C2     SING N N 4  
FDG N1    C6     SING N N 5  
FDG N1    HN1    SING N N 6  
FDG C2    N2     SING N N 7  
FDG C2    N3     DOUB N N 8  
FDG N2    HN2    SING N N 9  
FDG N2    HN2A   SING N N 10 
FDG N3    C4     SING N N 11 
FDG C4    C5     DOUB N N 12 
FDG C4    N9     SING N N 13 
FDG C5    C6     SING N N 14 
FDG C5    N7     SING N N 15 
FDG C6    O6     DOUB N N 16 
FDG N7    C8     SING N N 17 
FDG N7    HN7    SING N N 18 
FDG C8    O8     DOUB N N 19 
FDG C8    N9     SING N N 20 
FDG N9    "C1'"  SING N N 21 
FDG "C1'" "C2'"  SING N N 22 
FDG "C1'" "O4'"  SING N N 23 
FDG "C1'" "H1'"  SING N N 24 
FDG "C2'" "F2'"  SING N N 25 
FDG "C2'" "C3'"  SING N N 26 
FDG "C2'" "H2'"  SING N N 27 
FDG "C3'" "O3'"  SING N N 28 
FDG "C3'" "C4'"  SING N N 29 
FDG "C3'" "H3'"  SING N N 30 
FDG "O3'" "HO3'" SING N N 31 
FDG "C4'" "O4'"  SING N N 32 
FDG "C4'" "C5'"  SING N N 33 
FDG "C4'" "H4'"  SING N N 34 
FDG "C5'" "O5'"  SING N N 35 
FDG "C5'" "H5'"  SING N N 36 
FDG "C5'" "H5'A" SING N N 37 
FDG P     OP3    SING N N 38 
FDG OP3   HOP3   SING N N 39 
FDG OP2   HOP2   SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
FDG SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(N2C(=O)NC1=C2N=C(N)NC1=O)C(F)C3O"                                                                                                                           
FDG SMILES_CANONICAL CACTVS               3.370 "NC1=NC2=C(NC(=O)N2[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]3F)C(=O)N1"                                                                                                    
FDG SMILES           CACTVS               3.370 "NC1=NC2=C(NC(=O)N2[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3F)C(=O)N1"                                                                                                           
FDG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C([C@@H]1[C@H]([C@@H]([C@@H](O1)N2C3=C(C(=O)NC(=N3)N)NC2=O)F)O)OP(=O)(O)O"                                                                                                  
FDG SMILES           "OpenEye OEToolkits" 1.7.0 "C(C1C(C(C(O1)N2C3=C(C(=O)NC(=N3)N)NC2=O)F)O)OP(=O)(O)O"                                                                                                                     
FDG InChI            InChI                1.03  "InChI=1S/C10H13FN5O8P/c11-3-5(17)2(1-23-25(20,21)22)24-8(3)16-6-4(13-10(16)19)7(18)15-9(12)14-6/h2-3,5,8,17H,1H2,(H,13,19)(H2,20,21,22)(H3,12,14,15,18)/t2-,3+,5-,8-/m1/s1" 
FDG InChIKey         InChI                1.03  UPQKRMLTATYYQE-HFZKREBBSA-N                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
FDG "SYSTEMATIC NAME" ACDLabs              12.01 "2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7,9-dihydro-1H-purine-6,8-dione"                     
FDG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3R,4S,5R)-5-(2-azanyl-6,8-dioxo-1,7-dihydropurin-9-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
FDG "Create component"  2010-01-06 RCSB 
FDG "Modify descriptor" 2011-06-04 RCSB 
# 
