data_FVG
# 
_chem_comp.id                                    FVG 
_chem_comp.name                                  "1-[(2S)-1-{6-chloro-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-2-(piperazin-1-yl)-1H-benzimidazol-4-yl}pyrrolidin-2-yl]methanamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H32 Cl F N6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-04-20 
_chem_comp.pdbx_modified_date                    2018-09-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        471.013 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     FVG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6D5E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
FVG N1  N1  N  0 1 Y N N 36.300 28.097 23.543 -0.895 1.378  0.120  N1  FVG 1  
FVG N3  N2  N  0 1 N N N 37.990 26.257 25.062 -3.772 1.825  -1.306 N3  FVG 2  
FVG C4  C1  C  0 1 N N N 32.991 28.851 22.083 1.751  -0.113 -1.821 C4  FVG 3  
FVG C5  C2  C  0 1 Y N N 35.450 28.153 22.511 0.275  1.426  -0.465 C5  FVG 4  
FVG C6  C3  C  0 1 Y N N 35.590 28.671 24.622 -1.449 0.150  -0.069 C6  FVG 5  
FVG C7  C4  C  0 1 Y N N 35.963 28.825 25.964 -2.661 -0.432 0.331  C7  FVG 6  
FVG C8  C5  C  0 1 Y N N 34.996 29.376 26.828 -2.945 -1.737 -0.027 C8  FVG 7  
FVG C10 C6  C  0 1 Y N N 33.352 29.640 25.041 -0.843 -1.911 -1.178 C10 FVG 8  
FVG C13 C7  C  0 1 N N N 39.136 28.587 27.883 -5.337 -0.592 2.503  C13 FVG 9  
FVG C15 C8  C  0 1 N N S 38.516 28.705 25.550 -4.876 0.430  0.377  C15 FVG 10 
FVG C17 C9  C  0 1 N N N 36.688 26.525 21.189 1.463  2.929  0.895  C17 FVG 11 
FVG C20 C10 C  0 1 N N N 35.745 28.499 20.076 0.511  3.641  -1.213 C20 FVG 12 
FVG C21 C11 C  0 1 Y N N 31.944 30.087 20.237 2.803  -2.072 -0.672 C21 FVG 13 
FVG C22 C12 C  0 1 Y N N 31.677 31.249 19.525 3.745  -2.619 0.179  C22 FVG 14 
FVG C24 C13 C  0 1 Y N N 32.332 32.426 19.908 4.661  -1.798 0.814  C24 FVG 15 
FVG N   N3  N  0 1 Y N N 34.225 28.724 22.830 0.543  0.229  -1.065 N   FVG 16 
FVG C   C14 C  0 1 N N N 33.852 33.778 21.346 5.629  0.463  1.288  C   FVG 17 
FVG C1  C15 C  0 1 Y N N 33.212 32.484 20.967 4.633  -0.431 0.597  C1  FVG 18 
FVG C11 C16 C  0 1 Y N N 34.314 29.070 24.197 -0.540 -0.601 -0.828 C11 FVG 19 
FVG C12 C17 C  0 1 N N N 37.592 28.575 27.852 -3.820 -0.333 2.395  C12 FVG 20 
FVG C14 C18 C  0 1 N N N 39.517 29.270 26.572 -5.942 0.426  1.500  C14 FVG 21 
FVG C16 C19 C  0 1 N N N 39.031 27.332 25.039 -4.930 1.743  -0.406 C16 FVG 22 
FVG C18 C20 C  0 1 N N N 36.371 25.708 19.920 2.453  4.095  0.841  C18 FVG 23 
FVG C19 C21 C  0 1 N N N 35.501 27.679 18.798 1.501  4.806  -1.267 C19 FVG 24 
FVG C2  C22 C  0 1 Y N N 33.474 31.325 21.671 3.689  0.113  -0.254 C2  FVG 25 
FVG C23 C23 C  0 1 N N N 30.701 31.287 18.396 3.775  -4.107 0.415  C23 FVG 26 
FVG C3  C24 C  0 1 Y N N 32.833 30.133 21.307 2.775  -0.707 -0.888 C3  FVG 27 
FVG C9  C25 C  0 1 Y N N 33.737 29.749 26.346 -2.039 -2.473 -0.778 C9  FVG 28 
FVG F   F1  F  0 1 N N N 32.089 33.520 19.202 5.583  -2.331 1.647  F   FVG 29 
FVG N2  N4  N  0 1 N N N 37.276 28.375 26.388 -3.577 0.304  1.087  N2  FVG 30 
FVG N4  N5  N  0 1 N N N 35.737 27.650 21.259 1.113  2.523  -0.473 N4  FVG 31 
FVG N5  N6  N  0 1 N N N 36.464 26.572 18.727 1.851  5.212  0.101  N5  FVG 32 
FVG CL  CL1 CL 0 0 N N N 32.501 30.328 27.472 -2.412 -4.110 -1.218 CL  FVG 33 
FVG H1  H1  H  0 1 N N N 38.384 25.403 24.722 -3.733 1.024  -1.919 H1  FVG 34 
FVG H2  H2  H  0 1 N N N 37.667 26.126 25.999 -3.784 2.684  -1.835 H2  FVG 35 
FVG H4  H4  H  0 1 N N N 32.155 28.780 22.794 1.501  -0.838 -2.596 H4  FVG 36 
FVG H5  H5  H  0 1 N N N 32.938 28.015 21.371 2.158  0.786  -2.282 H5  FVG 37 
FVG H6  H6  H  0 1 N N N 35.229 29.512 27.874 -3.877 -2.188 0.280  H6  FVG 38 
FVG H7  H7  H  0 1 N N N 32.385 29.966 24.688 -0.143 -2.489 -1.763 H7  FVG 39 
FVG H8  H8  H  0 1 N N N 39.536 27.563 27.923 -5.576 -1.613 2.206  H8  FVG 40 
FVG H9  H9  H  0 1 N N N 39.507 29.159 28.746 -5.691 -0.393 3.515  H9  FVG 41 
FVG H10 H10 H  0 1 N N N 38.303 29.407 24.730 -5.026 -0.418 -0.292 H10 FVG 42 
FVG H11 H11 H  0 1 N N N 36.579 25.888 22.079 1.918  2.089  1.419  H11 FVG 43 
FVG H12 H12 H  0 1 N N N 37.717 26.910 21.137 0.562  3.241  1.424  H12 FVG 44 
FVG H13 H13 H  0 1 N N N 36.722 28.999 20.000 -0.401 3.961  -0.709 H13 FVG 45 
FVG H14 H14 H  0 1 N N N 34.953 29.256 20.173 0.272  3.319  -2.227 H14 FVG 46 
FVG H15 H15 H  0 1 N N N 31.467 29.158 19.963 2.091  -2.713 -1.171 H15 FVG 47 
FVG H16 H16 H  0 1 N N N 33.219 34.300 22.079 6.518  0.567  0.664  H16 FVG 48 
FVG H17 H17 H  0 1 N N N 34.840 33.583 21.789 5.184  1.444  1.452  H17 FVG 49 
FVG H18 H18 H  0 1 N N N 33.969 34.405 20.450 5.907  0.025  2.246  H18 FVG 50 
FVG H19 H19 H  0 1 N N N 37.183 29.529 28.217 -3.499 0.332  3.197  H19 FVG 51 
FVG H20 H20 H  0 1 N N N 37.192 27.749 28.458 -3.278 -1.277 2.456  H20 FVG 52 
FVG H21 H21 H  0 1 N N N 40.549 29.020 26.287 -6.905 0.081  1.124  H21 FVG 53 
FVG H22 H22 H  0 1 N N N 39.415 30.362 26.656 -6.033 1.413  1.955  H22 FVG 54 
FVG H23 H23 H  0 1 N N N 39.871 27.017 25.675 -4.908 2.582  0.290  H23 FVG 55 
FVG H24 H24 H  0 1 N N N 39.381 27.455 24.004 -5.848 1.780  -0.991 H24 FVG 56 
FVG H25 H25 H  0 1 N N N 35.353 25.299 19.995 2.692  4.417  1.855  H25 FVG 57 
FVG H26 H26 H  0 1 N N N 37.092 24.882 19.829 3.365  3.774  0.338  H26 FVG 58 
FVG H27 H27 H  0 1 N N N 35.625 28.328 17.918 2.402  4.494  -1.795 H27 FVG 59 
FVG H28 H28 H  0 1 N N N 34.479 27.273 18.814 1.045  5.647  -1.791 H28 FVG 60 
FVG H29 H29 H  0 1 N N N 34.169 31.337 22.498 3.666  1.179  -0.424 H29 FVG 61 
FVG H30 H30 H  0 1 N N N 31.224 31.076 17.451 3.134  -4.353 1.261  H30 FVG 62 
FVG H31 H31 H  0 1 N N N 29.921 30.529 18.560 3.416  -4.623 -0.476 H31 FVG 63 
FVG H32 H32 H  0 1 N N N 30.239 32.284 18.345 4.797  -4.420 0.629  H32 FVG 64 
FVG H33 H33 H  0 1 N N N 36.273 26.025 17.912 2.463  6.014  0.095  H33 FVG 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
FVG C23 C22 SING N N 1  
FVG N5  C19 SING N N 2  
FVG N5  C18 SING N N 3  
FVG C19 C20 SING N N 4  
FVG F   C24 SING N N 5  
FVG C22 C24 DOUB Y N 6  
FVG C22 C21 SING Y N 7  
FVG C24 C1  SING Y N 8  
FVG C18 C17 SING N N 9  
FVG C20 N4  SING N N 10 
FVG C21 C3  DOUB Y N 11 
FVG C1  C   SING N N 12 
FVG C1  C2  DOUB Y N 13 
FVG C17 N4  SING N N 14 
FVG N4  C5  SING N N 15 
FVG C3  C2  SING Y N 16 
FVG C3  C4  SING N N 17 
FVG C4  N   SING N N 18 
FVG C5  N   SING Y N 19 
FVG C5  N1  DOUB Y N 20 
FVG N   C11 SING Y N 21 
FVG N1  C6  SING Y N 22 
FVG C11 C6  DOUB Y N 23 
FVG C11 C10 SING Y N 24 
FVG C6  C7  SING Y N 25 
FVG C16 N3  SING N N 26 
FVG C16 C15 SING N N 27 
FVG C10 C9  DOUB Y N 28 
FVG C15 N2  SING N N 29 
FVG C15 C14 SING N N 30 
FVG C7  N2  SING N N 31 
FVG C7  C8  DOUB Y N 32 
FVG C9  C8  SING Y N 33 
FVG C9  CL  SING N N 34 
FVG N2  C12 SING N N 35 
FVG C14 C13 SING N N 36 
FVG C12 C13 SING N N 37 
FVG N3  H1  SING N N 38 
FVG N3  H2  SING N N 39 
FVG C4  H4  SING N N 40 
FVG C4  H5  SING N N 41 
FVG C8  H6  SING N N 42 
FVG C10 H7  SING N N 43 
FVG C13 H8  SING N N 44 
FVG C13 H9  SING N N 45 
FVG C15 H10 SING N N 46 
FVG C17 H11 SING N N 47 
FVG C17 H12 SING N N 48 
FVG C20 H13 SING N N 49 
FVG C20 H14 SING N N 50 
FVG C21 H15 SING N N 51 
FVG C   H16 SING N N 52 
FVG C   H17 SING N N 53 
FVG C   H18 SING N N 54 
FVG C12 H19 SING N N 55 
FVG C12 H20 SING N N 56 
FVG C14 H21 SING N N 57 
FVG C14 H22 SING N N 58 
FVG C16 H23 SING N N 59 
FVG C16 H24 SING N N 60 
FVG C18 H25 SING N N 61 
FVG C18 H26 SING N N 62 
FVG C19 H27 SING N N 63 
FVG C19 H28 SING N N 64 
FVG C2  H29 SING N N 65 
FVG C23 H30 SING N N 66 
FVG C23 H31 SING N N 67 
FVG C23 H32 SING N N 68 
FVG N5  H33 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
FVG SMILES           ACDLabs              12.01 "n4c2c(N1C(CCC1)CN)cc(cc2n(Cc3cc(c(c(C)c3)F)C)c4N5CCNCC5)Cl"                                                                                                                   
FVG InChI            InChI                1.03  "InChI=1S/C25H32ClFN6/c1-16-10-18(11-17(2)23(16)27)15-33-22-13-19(26)12-21(32-7-3-4-20(32)14-28)24(22)30-25(33)31-8-5-29-6-9-31/h10-13,20,29H,3-9,14-15,28H2,1-2H3/t20-/m0/s1" 
FVG InChIKey         InChI                1.03  CAPZSPOPEHSYOZ-FQEVSTJZSA-N                                                                                                                                                    
FVG SMILES_CANONICAL CACTVS               3.385 "Cc1cc(Cn2c3cc(Cl)cc(N4CCC[C@H]4CN)c3nc2N5CCNCC5)cc(C)c1F"                                                                                                                     
FVG SMILES           CACTVS               3.385 "Cc1cc(Cn2c3cc(Cl)cc(N4CCC[CH]4CN)c3nc2N5CCNCC5)cc(C)c1F"                                                                                                                      
FVG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc(cc(c1F)C)Cn2c3cc(cc(c3nc2N4CCNCC4)N5CCC[C@H]5CN)Cl"                                                                                                                     
FVG SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1cc(cc(c1F)C)Cn2c3cc(cc(c3nc2N4CCNCC4)N5CCCC5CN)Cl"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
FVG "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(2S)-1-{6-chloro-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-2-(piperazin-1-yl)-1H-benzimidazol-4-yl}pyrrolidin-2-yl]methanamine"    
FVG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{S})-1-[6-chloranyl-1-[(4-fluoranyl-3,5-dimethyl-phenyl)methyl]-2-piperazin-1-yl-benzimidazol-4-yl]pyrrolidin-2-yl]methanamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
FVG "Create component" 2018-04-20 RCSB 
FVG "Initial release"  2018-09-19 RCSB 
# 
