data_KXG
#

_chem_comp.id                                   KXG
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-sulfanyl-oxolan-2-yl]methyl hydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H23 N5 O13 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-01-23
_chem_comp.pdbx_modified_date                   2020-01-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       575.381
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KXG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6NR0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KXG  C1B   C1   C  0  1  N  N  R  18.358  -21.443   -7.840  -4.405  -0.232   0.835  C1B   KXG   1  
KXG  C1D   C2   C  0  1  N  N  R  24.478  -31.787   -6.759   6.961   1.862   1.603  C1D   KXG   2  
KXG  C2A   C3   C  0  1  Y  N  N  16.028  -19.404  -10.825  -7.552   2.968   0.908  C2A   KXG   3  
KXG  C2B   C4   C  0  1  N  N  R  18.421  -21.707   -6.334  -5.276  -1.480   0.541  C2B   KXG   4  
KXG  C2D   C5   C  0  1  N  N  R  24.923  -32.229   -8.138   7.576   2.498   0.342  C2D   KXG   5  
KXG  C3B   C6   C  0  1  N  N  S  19.832  -22.174   -6.132  -4.390  -2.628   1.083  C3B   KXG   6  
KXG  C3D   C7   C  0  1  N  N  S  25.256  -30.960   -8.794   6.959   1.695  -0.828  C3D   KXG   7  
KXG  C4A   C8   C  0  1  Y  N  N  16.514  -21.104   -9.351  -5.764   1.773   0.098  C4A   KXG   8  
KXG  C4B   C9   C  0  1  N  N  R  20.315  -22.758   -7.506  -2.971  -2.029   1.111  C4B   KXG   9  
KXG  C4D   C10  C  0  1  N  N  R  25.400  -29.922   -7.740   5.693   1.087  -0.173  C4D   KXG  10  
KXG  C5A   C11  C  0  1  Y  N  N  15.285  -21.767   -9.726  -5.713   2.626  -1.017  C5A   KXG  11  
KXG  C5B   C12  C  0  1  N  N  N  20.573  -24.291   -7.576  -2.034  -2.869   0.242  C5B   KXG  12  
KXG  C5D   C13  C  0  1  N  N  N  25.746  -28.542   -8.137   5.263  -0.184  -0.909  C5D   KXG  13  
KXG  C6A   C14  C  0  1  Y  N  N  14.511  -21.133  -10.688  -6.653   3.667  -1.100  C6A   KXG  14  
KXG  C8A   C15  C  0  1  Y  N  N  16.482  -22.926   -8.119  -4.126   1.167  -1.247  C8A   KXG  15  
KXG  N1A   N1   N  0  1  Y  N  N  14.910  -19.982  -11.192  -7.543   3.795  -0.121  N1A   KXG  16  
KXG  N3A   N2   N  0  1  Y  N  N  16.811  -19.947   -9.920  -6.692   1.979   1.027  N3A   KXG  17  
KXG  N6A   N3   N  0  1  N  N  N  13.266  -21.731  -11.134  -6.652   4.539  -2.174  N6A   KXG  18  
KXG  N7A   N4   N  0  1  Y  N  N  15.328  -23.015   -8.848  -4.691   2.201  -1.798  N7A   KXG  19  
KXG  N9A   N5   N  0  1  Y  N  N  17.065  -21.821   -8.464  -4.751   0.863  -0.075  N9A   KXG  20  
KXG  O1A   O1   O  0  1  N  N  N  20.402  -26.546   -5.562   0.268  -3.052  -1.865  O1A   KXG  21  
KXG  O1N   O2   O  0  1  N  N  N  24.443  -26.198   -7.208   3.057  -1.862  -2.353  O1N   KXG  22  
KXG  O2A   O3   O  0  1  N  N  N  22.494  -26.163   -4.861   0.795  -4.524   0.116  O2A   KXG  23  
KXG  O2B   O4   O  0  1  N  N  N  18.003  -20.615   -5.481  -6.516  -1.415   1.250  O2B   KXG  24  
KXG  O2D   O5   O  0  1  N  N  N  26.046  -33.041   -7.996   7.212   3.877   0.249  O2D   KXG  25  
KXG  O2N   O6   O  0  1  N  N  N  23.155  -26.130   -9.012   4.200  -3.271  -0.598  O2N   KXG  26  
KXG  O3    O7   O  0  1  N  N  N  22.266  -27.434   -7.064   1.870  -2.139  -0.142  O3    KXG  27  
KXG  O3B   O8   O  0  1  N  N  N  20.640  -21.121   -5.548  -4.803  -3.000   2.399  O3B   KXG  28  
KXG  O3D   O9   O  0  1  N  N  N  26.301  -31.109   -9.848   6.609   2.559  -1.911  O3D   KXG  29  
KXG  O4B   O10  O  0  1  N  N  N  19.265  -22.373   -8.431  -3.060  -0.694   0.586  O4B   KXG  30  
KXG  O4D   O11  O  0  1  N  N  N  24.925  -30.394   -6.479   6.124   0.776   1.169  O4D   KXG  31  
KXG  O5B   O12  O  0  1  N  N  N  21.676  -24.708   -6.794  -0.698  -2.375   0.366  O5B   KXG  32  
KXG  O5D   O13  O  0  1  N  N  N  24.497  -28.225   -8.686   4.031  -0.658  -0.360  O5D   KXG  33  
KXG  PA    P1   P  0  1  N  N  N  21.718  -26.208   -6.098   0.552  -3.023  -0.413  PA    KXG  34  
KXG  PN    P2   P  0  1  N  N  N  23.570  -27.077   -7.981   3.284  -1.980  -0.895  PN    KXG  35  
KXG  S1D   S1   S  0  1  N  N  N  25.335  -32.584   -5.450   5.964   3.091   2.491  S1D   KXG  36  
KXG  H1B   H1   H  0  1  N  N  N  18.623  -20.399   -8.065  -4.521   0.081   1.872  H1B   KXG  37  
KXG  H1N   H2   H  0  1  N  N  N  23.396  -31.920   -6.611   7.751   1.484   2.252  H1N   KXG  38  
KXG  H2A   H3   H  0  1  N  N  N  16.311  -18.464  -11.275  -8.291   3.111   1.683  H2A   KXG  39  
KXG  H2B   H4   H  0  1  N  N  N  17.762  -22.564   -6.132  -5.447  -1.592  -0.529  H2B   KXG  40  
KXG  H2D   H5   H  0  1  N  N  N  24.101  -32.741   -8.660   8.661   2.389   0.350  H2D   KXG  41  
KXG  H3B   H6   H  0  1  N  N  N  19.803  -23.015   -5.424  -4.428  -3.488   0.413  H3B   KXG  42  
KXG  H3D   H7   H  0  1  N  N  N  24.345  -30.677   -9.342   7.639   0.911  -1.163  H3D   KXG  43  
KXG  H4B   H8   H  0  1  N  N  N  21.248  -22.244   -7.781  -2.601  -2.002   2.136  H4B   KXG  44  
KXG  H4D   H9   H  0  1  N  N  N  26.444  -30.192   -7.525   4.881   1.814  -0.159  H4D   KXG  45  
KXG  H52A  H10  H  0  0  N  N  N  19.674  -24.813   -7.218  -2.069  -3.908   0.568  H52A  KXG  46  
KXG  H51A  H11  H  0  0  N  N  N  20.764  -24.566   -8.624  -2.349  -2.804  -0.800  H51A  KXG  47  
KXG  H51N  H12  H  0  0  N  N  N  26.005  -27.906   -7.278   5.127   0.038  -1.967  H51N  KXG  48  
KXG  H52N  H13  H  0  0  N  N  N  26.557  -28.505   -8.879   6.031  -0.948  -0.793  H52N  KXG  49  
KXG  H8A   H14  H  0  1  N  N  N  16.840  -23.641   -7.393  -3.284   0.628  -1.658  H8A   KXG  50  
KXG  H61A  H15  H  0  0  N  N  N  12.840  -21.142  -11.821  -5.997   4.435  -2.882  H61A  KXG  51  
KXG  H62A  H16  H  0  0  N  N  N  13.452  -22.629  -11.533  -7.306   5.254  -2.220  H62A  KXG  52  
KXG  H1    H17  H  0  1  N  N  N  21.927  -26.359   -4.124   0.987  -4.582   1.062  H1    KXG  53  
KXG  HO2A  H18  H  0  0  N  N  N  18.078  -20.877   -4.571  -7.095  -2.174   1.099  HO2A  KXG  54  
KXG  H2    H19  H  0  1  N  N  N  26.340  -33.328   -8.852   7.523   4.417   0.989  H2    KXG  55  
KXG  H3    H20  H  0  1  N  N  N  23.567  -25.289   -8.854   4.390  -3.411   0.340  H3    KXG  56  
KXG  HO3A  H21  H  0  0  N  N  N  21.529  -21.433   -5.427  -5.710  -3.330   2.449  HO3A  KXG  57  
KXG  HO3N  H22  H  0  0  N  N  N  26.479  -30.262  -10.240   7.359   3.032  -2.296  HO3N  KXG  58  
KXG  H1S   H23  H  0  1  N  N  N  24.786  -32.047   -4.401   5.502   2.399   3.548  H1S   KXG  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KXG  C1B  C2B   SING  N  N   1  
KXG  C1B  N9A   SING  N  N   2  
KXG  C1B  O4B   SING  N  N   3  
KXG  C1D  C2D   SING  N  N   4  
KXG  C1D  O4D   SING  N  N   5  
KXG  C1D  S1D   SING  N  N   6  
KXG  C2A  N1A   DOUB  Y  N   7  
KXG  C2A  N3A   SING  Y  N   8  
KXG  C2B  C3B   SING  N  N   9  
KXG  C2B  O2B   SING  N  N  10  
KXG  C2D  C3D   SING  N  N  11  
KXG  C2D  O2D   SING  N  N  12  
KXG  C3B  C4B   SING  N  N  13  
KXG  C3B  O3B   SING  N  N  14  
KXG  C3D  C4D   SING  N  N  15  
KXG  C3D  O3D   SING  N  N  16  
KXG  C4A  C5A   SING  Y  N  17  
KXG  C4A  N3A   DOUB  Y  N  18  
KXG  C4A  N9A   SING  Y  N  19  
KXG  C4B  C5B   SING  N  N  20  
KXG  C4B  O4B   SING  N  N  21  
KXG  C4D  C5D   SING  N  N  22  
KXG  C4D  O4D   SING  N  N  23  
KXG  C5A  C6A   DOUB  Y  N  24  
KXG  C5A  N7A   SING  Y  N  25  
KXG  C5B  O5B   SING  N  N  26  
KXG  C5D  O5D   SING  N  N  27  
KXG  C6A  N1A   SING  Y  N  28  
KXG  C6A  N6A   SING  N  N  29  
KXG  C8A  N7A   DOUB  Y  N  30  
KXG  C8A  N9A   SING  Y  N  31  
KXG  O1A  PA    DOUB  N  N  32  
KXG  O1N  PN    DOUB  N  N  33  
KXG  O2A  PA    SING  N  N  34  
KXG  O2N  PN    SING  N  N  35  
KXG  O3   PA    SING  N  N  36  
KXG  O3   PN    SING  N  N  37  
KXG  O5B  PA    SING  N  N  38  
KXG  O5D  PN    SING  N  N  39  
KXG  C1B  H1B   SING  N  N  40  
KXG  C1D  H1N   SING  N  N  41  
KXG  C2A  H2A   SING  N  N  42  
KXG  C2B  H2B   SING  N  N  43  
KXG  C2D  H2D   SING  N  N  44  
KXG  C3B  H3B   SING  N  N  45  
KXG  C3D  H3D   SING  N  N  46  
KXG  C4B  H4B   SING  N  N  47  
KXG  C4D  H4D   SING  N  N  48  
KXG  C5B  H52A  SING  N  N  49  
KXG  C5B  H51A  SING  N  N  50  
KXG  C5D  H51N  SING  N  N  51  
KXG  C5D  H52N  SING  N  N  52  
KXG  C8A  H8A   SING  N  N  53  
KXG  N6A  H61A  SING  N  N  54  
KXG  N6A  H62A  SING  N  N  55  
KXG  O2A  H1    SING  N  N  56  
KXG  O2B  HO2A  SING  N  N  57  
KXG  O2D  H2    SING  N  N  58  
KXG  O2N  H3    SING  N  N  59  
KXG  O3B  HO3A  SING  N  N  60  
KXG  O3D  HO3N  SING  N  N  61  
KXG  S1D  H1S   SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KXG  SMILES            ACDLabs               12.01  "C2(C(C(C(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)S)O)O)O2)O)O)n4c3c(c(ncn3)N)nc4"  
KXG  InChI             InChI                 1.03   "InChI=1S/C15H23N5O13P2S/c16-12-7-13(18-3-17-12)20(4-19-7)14-10(23)8(21)5(31-14)1-29-34(25,26)33-35(27,28)30-2-6-9(22)11(24)15(36)32-6/h3-6,8-11,14-15,21-24,36H,1-2H2,(H,25,26)(H,27,28)(H2,16,17,18)/t5-,6-,8-,9-,10-,11-,14-,15-/m1/s1"  
KXG  InChIKey          InChI                 1.03   AIFODOLMLYAQQN-KEOHHSTQSA-N  
KXG  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H](S)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O"  
KXG  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](S)[CH](O)[CH]4O)[CH](O)[CH]3O"  
KXG  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OCC4[C@H]([C@H]([C@H](O4)S)O)O)O)O)N"  
KXG  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)S)O)O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KXG  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4R,5R)-3,4-dihydroxy-5-sulfanyltetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
KXG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-sulfanyl-oxolan-2-yl]methyl hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KXG  "Create component"  2019-01-23  RCSB  
KXG  "Initial release"   2020-01-22  RCSB  
##
