data_PVG
# 
_chem_comp.id                                    PVG 
_chem_comp.name                                  "Phycoviolobilin, green light-absorbing form" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H40 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-11-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        588.694 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PVG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VV4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PVG C32 C32 C 0 1 N N N N N N -9.331  -16.155 -30.758 5.554  0.465  1.472  C32 PVG 1  
PVG C31 C31 C 0 1 N N N N N N -8.654  -14.837 -30.411 5.179  -0.942 1.941  C31 PVG 2  
PVG C3  C3  C 0 1 N N N N N N -7.119  -14.904 -30.453 4.623  -1.726 0.780  C3  PVG 3  
PVG C2  C2  C 0 1 N N N N N N -6.280  -14.602 -31.490 5.298  -2.555 -0.010 C2  PVG 4  
PVG C21 C21 C 0 1 N N N N N N -6.663  -14.509 -33.019 6.768  -2.865 0.113  C21 PVG 5  
PVG C1  C1  C 0 1 N N N N N N -4.967  -14.602 -30.998 4.398  -3.122 -1.019 C1  PVG 6  
PVG O1  O1  O 0 1 N N N N N N -3.954  -14.581 -31.708 4.728  -3.914 -1.882 O1  PVG 7  
PVG N1  N1  N 0 1 N N N N N N -4.953  -14.785 -29.680 3.153  -2.638 -0.851 N1  PVG 8  
PVG C4  C4  C 0 1 N N S N N N -6.292  -14.494 -29.289 3.191  -1.725 0.299  C4  PVG 9  
PVG C5  C5  C 0 1 N N N N N N -6.706  -13.539 -28.160 2.261  -2.227 1.406  C5  PVG 10 
PVG C6  C6  C 0 1 Y N N N N N -5.894  -13.752 -26.940 0.828  -2.087 0.961  C6  PVG 11 
PVG N2  N2  N 0 1 Y N N N N N -6.206  -14.588 -25.933 0.069  -0.984 1.110  N2  PVG 12 
PVG C7  C7  C 0 1 Y N N N N N -4.777  -13.015 -26.560 0.098  -3.053 0.338  C7  PVG 13 
PVG C41 C41 C 0 1 N N N N N N -4.092  -11.938 -27.405 0.581  -4.435 -0.020 C41 PVG 14 
PVG C8  C8  C 0 1 Y N N N N N -4.376  -13.436 -25.300 -1.171 -2.542 0.091  C8  PVG 15 
PVG C51 C51 C 0 1 N N N N N N -3.157  -12.867 -24.501 -2.313 -3.260 -0.580 C51 PVG 16 
PVG C52 C52 C 0 1 N N N N N N -3.684  -11.743 -23.554 -3.146 -3.991 0.475  C52 PVG 17 
PVG C53 C53 C 0 1 N N N N N N -2.511  -11.173 -22.795 -4.288 -4.709 -0.196 C53 PVG 18 
PVG O55 O55 O 0 1 N N N N N N -2.107  -11.802 -21.779 -5.156 -5.423 0.538  O55 PVG 19 
PVG O54 O54 O 0 1 N N N N N N -1.886  -10.304 -23.387 -4.422 -4.643 -1.395 O54 PVG 20 
PVG C9  C9  C 0 1 Y N N N N N -5.301  -14.445 -24.916 -1.183 -1.234 0.581  C9  PVG 21 
PVG C10 C10 C 0 1 N N N N N N -5.232  -15.113 -23.656 -2.259 -0.344 0.541  C10 PVG 22 
PVG C11 C11 C 0 1 N N N N N N -5.913  -16.346 -23.504 -2.046 1.026  0.763  C11 PVG 23 
PVG N3  N3  N 0 1 N N N N N N -6.599  -17.031 -24.425 -0.855 1.621  0.910  N3  PVG 24 
PVG C12 C12 C 0 1 N N N N N N -5.970  -17.085 -22.296 -3.053 2.017  0.863  C12 PVG 25 
PVG C61 C61 C 0 1 N N N N N N -5.272  -16.808 -20.968 -4.541 1.802  0.753  C61 PVG 26 
PVG C62 C62 C 0 1 N N N N N N -6.300  -16.391 -19.850 -4.952 1.824  -0.720 C62 PVG 27 
PVG C63 C63 C 0 1 N N N N N N -6.789  -14.984 -20.143 -6.439 1.609  -0.830 C63 PVG 28 
PVG O65 O65 O 0 1 N N N N N N -8.012  -14.851 -20.355 -7.102 1.454  0.168  O65 PVG 29 
PVG O64 O64 O 0 1 N N N N N N -5.912  -14.106 -20.311 -7.027 1.590  -2.037 O64 PVG 30 
PVG C13 C13 C 0 1 N N N N N N -6.744  -18.193 -22.567 -2.419 3.200  1.078  C13 PVG 31 
PVG C71 C71 C 0 1 N N N N N N -7.016  -19.335 -21.498 -3.069 4.548  1.252  C71 PVG 32 
PVG C14 C14 C 0 1 N N N N N N -7.190  -18.103 -23.895 -1.031 2.924  1.104  C14 PVG 33 
PVG C15 C15 C 0 1 N N N N N N -7.938  -19.079 -24.593 0.031  3.908  1.305  C15 PVG 34 
PVG C16 C16 C 0 1 N N N N N N -9.143  -19.730 -24.253 1.169  3.859  0.534  C16 PVG 35 
PVG C17 C17 C 0 1 N N N N N N -10.090 -19.252 -23.307 1.388  3.017  -0.580 C17 PVG 36 
PVG C81 C81 C 0 1 N N N N N N -9.991  -18.004 -22.455 0.418  2.010  -1.141 C81 PVG 37 
PVG C18 C18 C 0 1 N N N N N N -11.131 -20.167 -23.223 2.634  3.284  -1.053 C18 PVG 38 
PVG C91 C91 C 0 1 N N N N N N -12.431 -20.094 -22.342 3.291  2.622  -2.236 C91 PVG 39 
PVG C92 C92 C 0 1 N N N N N N -12.063 -20.059 -20.779 3.066  3.473  -3.488 C92 PVG 40 
PVG C19 C19 C 0 1 N N N N N N -10.834 -21.127 -24.187 3.203  4.290  -0.245 C19 PVG 41 
PVG O19 O19 O 0 1 N N N N N N -11.555 -22.097 -24.420 4.315  4.771  -0.385 O19 PVG 42 
PVG N4  N4  N 0 1 N N N N N N -9.676  -20.859 -24.830 2.313  4.634  0.705  N4  PVG 43 
PVG H1  H1  H 0 1 N N N N N N -10.423 -16.031 -30.708 6.367  0.403  0.748  H1  PVG 44 
PVG H2  H2  H 0 1 N N N N N N -9.043  -16.458 -31.775 4.688  0.936  1.006  H2  PVG 45 
PVG H3  H3  H 0 1 N N N N N N -9.016  -16.928 -30.042 5.874  1.060  2.327  H3  PVG 46 
PVG H4  H4  H 0 1 N N N N N N -8.989  -14.074 -31.130 6.066  -1.444 2.327  H4  PVG 47 
PVG H5  H5  H 0 1 N N N N N N -8.962  -14.545 -29.396 4.428  -0.875 2.727  H5  PVG 48 
PVG H8  H8  H 0 1 N N N N N N -7.758  -14.529 -33.125 7.056  -3.574 -0.663 H8  PVG 49 
PVG H9  H9  H 0 1 N N N N N N -6.271  -13.571 -33.439 7.344  -1.947 -0.001 H9  PVG 50 
PVG H10 H10 H 0 1 N N N N N N -6.226  -15.362 -33.559 6.967  -3.299 1.093  H10 PVG 51 
PVG H11 H11 H 0 1 N N N N N N -4.185  -15.061 -29.102 2.375  -2.856 -1.387 H11 PVG 52 
PVG H12 H12 H 0 1 N N N N N N -6.447  -15.417 -28.711 2.899  -0.721 -0.011 H12 PVG 53 
PVG H13 H13 H 0 1 N N N N N N -6.571  -12.502 -28.502 2.477  -3.275 1.613  H13 PVG 54 
PVG H14 H14 H 0 1 N N N N N N -7.765  -13.710 -27.918 2.420  -1.638 2.309  H14 PVG 55 
PVG H15 H15 H 0 1 N N N N N N -6.982  -15.219 -25.928 0.353  -0.153 1.521  H15 PVG 56 
PVG H16 H16 H 0 1 N N N N N N -4.538  -10.957 -27.182 0.380  -5.116 0.807  H16 PVG 57 
PVG H17 H17 H 0 1 N N N N N N -3.018  -11.915 -27.168 0.060  -4.782 -0.912 H17 PVG 58 
PVG H18 H18 H 0 1 N N N N N N -4.227  -12.168 -28.472 1.653  -4.406 -0.214 H18 PVG 59 
PVG H19 H19 H 0 1 N N N N N N -2.693  -13.668 -23.907 -2.940 -2.537 -1.101 H19 PVG 60 
PVG H20 H20 H 0 1 N N N N N N -2.415  -12.450 -25.198 -1.918 -3.981 -1.295 H20 PVG 61 
PVG H21 H21 H 0 1 N N N N N N -4.163  -10.951 -24.148 -2.518 -4.714 0.996  H21 PVG 62 
PVG H22 H22 H 0 1 N N N N N N -4.415  -12.164 -22.848 -3.540 -3.270 1.190  H22 PVG 63 
PVG H23 H23 H 0 1 N N N N N N -1.239  -11.497 -21.542 -5.873 -5.866 0.063  H23 PVG 64 
PVG H24 H24 H 0 1 N N N N N N -4.673  -14.687 -22.836 -3.255 -0.710 0.340  H24 PVG 65 
PVG H27 H27 H 0 1 N N N N N N -4.743  -17.717 -20.646 -4.801 0.837  1.188  H27 PVG 66 
PVG H28 H28 H 0 1 N N N N N N -4.547  -15.993 -21.109 -5.063 2.595  1.288  H28 PVG 67 
PVG H29 H29 H 0 1 N N N N N N -7.152  -17.087 -19.851 -4.691 2.789  -1.156 H29 PVG 68 
PVG H30 H30 H 0 1 N N N N N N -5.808  -16.415 -18.866 -4.429 1.031  -1.255 H30 PVG 69 
PVG H31 H31 H 0 1 N N N N N N -6.319  -13.308 -20.629 -7.984 1.449  -2.057 H31 PVG 70 
PVG H32 H32 H 0 1 N N N N N N -6.512  -19.082 -20.554 -3.279 4.717  2.308  H32 PVG 71 
PVG H33 H33 H 0 1 N N N N N N -8.098  -19.423 -21.323 -2.398 5.325  0.885  H33 PVG 72 
PVG H34 H34 H 0 1 N N N N N N -6.627  -20.292 -21.876 -4.001 4.577  0.687  H34 PVG 73 
PVG H35 H35 H 0 1 N N N N N N -7.518  -19.375 -25.543 -0.078 4.673  2.060  H35 PVG 74 
PVG H37 H37 H 0 1 N N N N N N -10.889 -17.917 -21.826 -0.535 2.497  -1.345 H37 PVG 75 
PVG H38 H38 H 0 1 N N N N N N -9.099  -18.068 -21.814 0.819  1.594  -2.065 H38 PVG 76 
PVG H39 H39 H 0 1 N N N N N N -9.912  -17.121 -23.106 0.268  1.208  -0.417 H39 PVG 77 
PVG H40 H40 H 0 1 N N N N N N -12.991 -19.183 -22.601 4.361  2.526  -2.050 H40 PVG 78 
PVG H41 H41 H 0 1 N N N N N N -13.054 -20.977 -22.546 2.858  1.633  -2.386 H41 PVG 79 
PVG H42 H42 H 0 1 N N N N N N -12.988 -20.008 -20.185 3.465  2.952  -4.358 H42 PVG 80 
PVG H43 H43 H 0 1 N N N N N N -11.506 -20.970 -20.513 1.998  3.642  -3.624 H43 PVG 81 
PVG H44 H44 H 0 1 N N N N N N -11.443 -19.175 -20.568 3.574  4.430  -3.373 H44 PVG 82 
PVG H6  H6  H 0 1 N N N N N N -9.281  -21.383 -25.584 2.447  5.305  1.393  H6  PVG 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PVG C21 C2  SING N N 1  
PVG O1  C1  DOUB N N 2  
PVG C2  C1  SING N N 3  
PVG C2  C3  DOUB N N 4  
PVG C1  N1  SING N N 5  
PVG C32 C31 SING N N 6  
PVG C3  C31 SING N N 7  
PVG C3  C4  SING N N 8  
PVG N1  C4  SING N N 9  
PVG C4  C5  SING N N 10 
PVG C5  C6  SING N N 11 
PVG C41 C7  SING N N 12 
PVG C6  C7  DOUB Y N 13 
PVG C6  N2  SING Y N 14 
PVG C7  C8  SING Y N 15 
PVG N2  C9  SING Y N 16 
PVG C8  C9  DOUB Y N 17 
PVG C8  C51 SING N N 18 
PVG C9  C10 SING N N 19 
PVG N4  C16 SING N N 20 
PVG N4  C19 SING N N 21 
PVG C15 C16 DOUB N E 22 
PVG C15 C14 SING N N 23 
PVG C51 C52 SING N N 24 
PVG N3  C14 DOUB N N 25 
PVG N3  C11 SING N N 26 
PVG O19 C19 DOUB N N 27 
PVG C16 C17 SING N N 28 
PVG C19 C18 SING N N 29 
PVG C14 C13 SING N N 30 
PVG C10 C11 DOUB N Z 31 
PVG C52 C53 SING N N 32 
PVG C11 C12 SING N N 33 
PVG O54 C53 DOUB N N 34 
PVG C17 C18 DOUB N N 35 
PVG C17 C81 SING N N 36 
PVG C18 C91 SING N N 37 
PVG C53 O55 SING N N 38 
PVG C13 C12 DOUB N N 39 
PVG C13 C71 SING N N 40 
PVG C91 C92 SING N N 41 
PVG C12 C61 SING N N 42 
PVG C61 C62 SING N N 43 
PVG O65 C63 DOUB N N 44 
PVG O64 C63 SING N N 45 
PVG C63 C62 SING N N 46 
PVG C32 H1  SING N N 47 
PVG C32 H2  SING N N 48 
PVG C32 H3  SING N N 49 
PVG C31 H4  SING N N 50 
PVG C31 H5  SING N N 51 
PVG C21 H8  SING N N 52 
PVG C21 H9  SING N N 53 
PVG C21 H10 SING N N 54 
PVG N1  H11 SING N N 55 
PVG C4  H12 SING N N 56 
PVG C5  H13 SING N N 57 
PVG C5  H14 SING N N 58 
PVG N2  H15 SING N N 59 
PVG C41 H16 SING N N 60 
PVG C41 H17 SING N N 61 
PVG C41 H18 SING N N 62 
PVG C51 H19 SING N N 63 
PVG C51 H20 SING N N 64 
PVG C52 H21 SING N N 65 
PVG C52 H22 SING N N 66 
PVG O55 H23 SING N N 67 
PVG C10 H24 SING N N 68 
PVG C61 H27 SING N N 69 
PVG C61 H28 SING N N 70 
PVG C62 H29 SING N N 71 
PVG C62 H30 SING N N 72 
PVG O64 H31 SING N N 73 
PVG C71 H32 SING N N 74 
PVG C71 H33 SING N N 75 
PVG C71 H34 SING N N 76 
PVG C15 H35 SING N N 77 
PVG C81 H37 SING N N 78 
PVG C81 H38 SING N N 79 
PVG C81 H39 SING N N 80 
PVG C91 H40 SING N N 81 
PVG C91 H41 SING N N 82 
PVG C92 H42 SING N N 83 
PVG C92 H43 SING N N 84 
PVG C92 H44 SING N N 85 
PVG N4  H6  SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PVG InChI            InChI                1.03  "InChI=1S/C33H40N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h13,15,27,35H,7-12,14H2,1-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13+,28-15-/t27-/m0/s1" 
PVG InChIKey         InChI                1.03  YWHXTEHCIWOHBT-STWNLGFLSA-N                                                                                                                                                                                                                             
PVG SMILES_CANONICAL CACTVS               3.370 "CCC1=C(C)C(=O)N[C@H]1Cc2[nH]c(\C=C3/N=C(\C=C/4NC(=O)C(=C/4C)CC)C(=C3CCC(O)=O)C)c(CCC(O)=O)c2C"                                                                                                                                                         
PVG SMILES           CACTVS               3.370 "CCC1=C(C)C(=O)N[CH]1Cc2[nH]c(C=C3N=C(C=C4NC(=O)C(=C4C)CC)C(=C3CCC(O)=O)C)c(CCC(O)=O)c2C"                                                                                                                                                               
PVG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCC1=C(C(=O)N[C@H]1Cc2c(c(c([nH]2)/C=C\3/C(=C(C(=N3)/C=C/4\C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C"                                                                                                                                                  
PVG SMILES           "OpenEye OEToolkits" 1.7.6 "CCC1=C(C(=O)NC1Cc2c(c(c([nH]2)C=C3C(=C(C(=N3)C=C4C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C"                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           PVG 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   1.7.6 
_pdbx_chem_comp_identifier.identifier        "3-[5-[[(2S)-3-ethyl-4-methyl-5-oxidanylidene-1,2-dihydropyrrol-2-yl]methyl]-2-[(Z)-[5-[(E)-(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PVG "Create component" 2012-11-12 PDBJ 
PVG "Initial release"  2013-01-25 RCSB 
PVG "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            PVG 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C31 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
