data_ROG
#

_chem_comp.id                                   ROG
_chem_comp.name                                 "2-({[(3S)-1-methylpiperidin-3-yl]methyl}sulfanyl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H24 N4 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-17
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       348.529
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ROG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VUR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ROG  C10  C1   C  0  1  N  N  N  18.760  -10.244  42.716   6.820  -0.630  -0.496  C10  ROG   1  
ROG  C12  C2   C  0  1  N  N  N  18.097  -11.796  41.302   6.651   1.584  -1.462  C12  ROG   2  
ROG  C13  C3   C  0  1  N  N  N  18.692   -9.896  40.325   4.675   0.494  -0.585  C13  ROG   3  
ROG  C15  C4   C  0  1  Y  N  N  19.264  -11.103  35.219  -2.115   1.115   0.231  C15  ROG   4  
ROG  C16  C5   C  0  1  Y  N  N  20.482  -11.635  35.633  -2.441  -0.221   0.015  C16  ROG   5  
ROG  C17  C6   C  0  1  Y  N  N  20.970  -12.785  34.761  -3.876  -0.433  -0.140  C17  ROG   6  
ROG  C18  C7   C  0  1  Y  N  N  20.029  -13.013  33.723  -4.599   0.683  -0.045  C18  ROG   7  
ROG  C20  C8   C  0  1  N  N  N  21.669  -14.724  32.632  -6.602  -0.559  -0.816  C20  ROG   8  
ROG  C21  C9   C  0  1  N  N  N  22.730  -13.997  33.489  -5.980  -1.750  -0.071  C21  ROG   9  
ROG  C22  C10  C  0  1  N  N  N  22.227  -13.617  34.870  -4.484  -1.807  -0.386  C22  ROG  10  
ROG  N01  N1   N  0  1  N  N  N  22.377  -11.593  37.278  -1.638  -2.505  -0.237  N01  ROG  11  
ROG  C02  C11  C  0  1  Y  N  N  21.118  -11.095  36.778  -1.379  -1.163  -0.025  C02  ROG  12  
ROG  N03  N2   N  0  1  Y  N  N  20.519  -10.094  37.399  -0.137  -0.738   0.144  N03  ROG  13  
ROG  C04  C12  C  0  1  Y  N  N  19.361   -9.585  36.982   0.126   0.548   0.348  C04  ROG  14  
ROG  S05  S1   S  0  1  N  N  N  18.602   -8.192  37.869   1.799   1.054   0.566  S05  ROG  15  
ROG  C06  C13  C  0  1  N  N  N  19.535   -7.653  39.345   2.634  -0.545   0.415  C06  ROG  16  
ROG  C07  C14  C  0  1  N  N  S  19.652   -8.697  40.472   4.143  -0.350   0.575  C07  ROG  17  
ROG  C08  C15  C  0  1  N  N  N  19.480   -8.043  41.754   4.838  -1.715   0.567  C08  ROG  18  
ROG  C09  C16  C  0  1  N  N  N  19.589   -8.955  42.876   6.352  -1.508   0.667  C09  ROG  19  
ROG  N11  N3   N  0  1  N  N  N  18.855  -10.850  41.406   6.126   0.664  -0.443  N11  ROG  20  
ROG  N14  N4   N  0  1  Y  N  N  18.739  -10.086  35.918  -0.829   1.458   0.392  N14  ROG  21  
ROG  C19  C17  C  0  1  N  N  N  20.234  -14.111  32.662  -6.112   0.737  -0.165  C19  ROG  22  
ROG  S23  S2   S  0  1  Y  N  N  18.732  -11.932  33.866  -3.579   2.083   0.246  S23  ROG  23  
ROG  H1   H1   H  0  1  N  N  N  17.704  -10.002  42.909   7.895  -0.469  -0.419  H1   ROG  24  
ROG  H2   H2   H  0  1  N  N  N  19.110  -10.974  43.460   6.593  -1.125  -1.439  H2   ROG  25  
ROG  H3   H3   H  0  1  N  N  N  18.257  -12.489  42.141   6.173   2.557  -1.352  H3   ROG  26  
ROG  H4   H4   H  0  1  N  N  N  17.058  -11.436  41.317   7.728   1.691  -1.334  H4   ROG  27  
ROG  H5   H5   H  0  1  N  N  N  18.290  -12.318  40.353   6.441   1.185  -2.454  H5   ROG  28  
ROG  H6   H6   H  0  1  N  N  N  17.656   -9.526  40.329   4.458  -0.007  -1.529  H6   ROG  29  
ROG  H7   H7   H  0  1  N  N  N  18.897  -10.401  39.370   4.192   1.472  -0.574  H7   ROG  30  
ROG  H8   H8   H  0  1  N  N  N  21.600  -15.762  32.990  -6.302  -0.577  -1.863  H8   ROG  31  
ROG  H9   H9   H  0  1  N  N  N  22.017  -14.718  31.588  -7.688  -0.615  -0.745  H9   ROG  32  
ROG  H10  H10  H  0  1  N  N  N  23.600  -14.660  33.604  -6.126  -1.625   1.002  H10  ROG  33  
ROG  H11  H11  H  0  1  N  N  N  23.035  -13.080  32.964  -6.455  -2.674  -0.400  H11  ROG  34  
ROG  H12  H12  H  0  1  N  N  N  22.008  -14.532  35.441  -4.342  -2.088  -1.430  H12  ROG  35  
ROG  H13  H13  H  0  1  N  N  N  23.002  -13.036  35.391  -4.003  -2.541   0.260  H13  ROG  36  
ROG  H14  H14  H  0  1  N  N  N  22.644  -11.072  38.089  -2.526  -2.792  -0.502  H14  ROG  37  
ROG  H15  H15  H  0  1  N  N  N  22.281  -12.559  37.519  -0.932  -3.160  -0.122  H15  ROG  38  
ROG  H16  H16  H  0  1  N  N  N  20.552   -7.385  39.024   2.270  -1.219   1.190  H16  ROG  39  
ROG  H17  H17  H  0  1  N  N  N  19.034   -6.764  39.757   2.424  -0.973  -0.566  H17  ROG  40  
ROG  H18  H18  H  0  1  N  N  N  20.675   -9.100  40.430   4.346   0.157   1.518  H18  ROG  41  
ROG  H19  H19  H  0  1  N  N  N  20.252   -7.267  41.857   4.494  -2.304   1.417  H19  ROG  42  
ROG  H20  H20  H  0  1  N  N  N  18.485   -7.576  41.778   4.602  -2.238  -0.360  H20  ROG  43  
ROG  H21  H21  H  0  1  N  N  N  20.646   -9.235  42.993   6.855  -2.474   0.619  H21  ROG  44  
ROG  H22  H22  H  0  1  N  N  N  19.246   -8.433  43.781   6.591  -1.019   1.612  H22  ROG  45  
ROG  H24  H24  H  0  1  N  N  N  20.026  -13.676  31.673  -6.558   0.840   0.824  H24  ROG  46  
ROG  H25  H25  H  0  1  N  N  N  19.519  -14.922  32.864  -6.394   1.587  -0.786  H25  ROG  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ROG  C20  C19  SING  N  N   1  
ROG  C20  C21  SING  N  N   2  
ROG  C19  C18  SING  N  N   3  
ROG  C21  C22  SING  N  N   4  
ROG  C18  S23  SING  Y  N   5  
ROG  C18  C17  DOUB  Y  N   6  
ROG  S23  C15  SING  Y  N   7  
ROG  C17  C22  SING  N  N   8  
ROG  C17  C16  SING  Y  N   9  
ROG  C15  C16  DOUB  Y  N  10  
ROG  C15  N14  SING  Y  N  11  
ROG  C16  C02  SING  Y  N  12  
ROG  N14  C04  DOUB  Y  N  13  
ROG  C02  N01  SING  N  N  14  
ROG  C02  N03  DOUB  Y  N  15  
ROG  C04  N03  SING  Y  N  16  
ROG  C04  S05  SING  N  N  17  
ROG  S05  C06  SING  N  N  18  
ROG  C06  C07  SING  N  N  19  
ROG  C13  C07  SING  N  N  20  
ROG  C13  N11  SING  N  N  21  
ROG  C07  C08  SING  N  N  22  
ROG  C12  N11  SING  N  N  23  
ROG  N11  C10  SING  N  N  24  
ROG  C08  C09  SING  N  N  25  
ROG  C10  C09  SING  N  N  26  
ROG  C10  H1   SING  N  N  27  
ROG  C10  H2   SING  N  N  28  
ROG  C12  H3   SING  N  N  29  
ROG  C12  H4   SING  N  N  30  
ROG  C12  H5   SING  N  N  31  
ROG  C13  H6   SING  N  N  32  
ROG  C13  H7   SING  N  N  33  
ROG  C20  H8   SING  N  N  34  
ROG  C20  H9   SING  N  N  35  
ROG  C21  H10  SING  N  N  36  
ROG  C21  H11  SING  N  N  37  
ROG  C22  H12  SING  N  N  38  
ROG  C22  H13  SING  N  N  39  
ROG  N01  H14  SING  N  N  40  
ROG  N01  H15  SING  N  N  41  
ROG  C06  H16  SING  N  N  42  
ROG  C06  H17  SING  N  N  43  
ROG  C07  H18  SING  N  N  44  
ROG  C08  H19  SING  N  N  45  
ROG  C08  H20  SING  N  N  46  
ROG  C09  H21  SING  N  N  47  
ROG  C09  H22  SING  N  N  48  
ROG  C19  H24  SING  N  N  49  
ROG  C19  H25  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ROG  SMILES            ACDLabs               12.01  "C1CCC(CN1C)CSc2nc(c3c(n2)sc4c3CCCC4)N"  
ROG  InChI             InChI                 1.03   "InChI=1S/C17H24N4S2/c1-21-8-4-5-11(9-21)10-22-17-19-15(18)14-12-6-2-3-7-13(12)23-16(14)20-17/h11H,2-10H2,1H3,(H2,18,19,20)/t11-/m0/s1"  
ROG  InChIKey          InChI                 1.03   JTFCZCDNOWUZNN-NSHDSACASA-N  
ROG  SMILES_CANONICAL  CACTVS                3.385  "CN1CCC[C@H](CSc2nc(N)c3c(sc4CCCCc34)n2)C1"  
ROG  SMILES            CACTVS                3.385  "CN1CCC[CH](CSc2nc(N)c3c(sc4CCCCc34)n2)C1"  
ROG  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1CCC[C@@H](C1)CSc2nc(c3c4c(sc3n2)CCCC4)N"  
ROG  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1CCCC(C1)CSc2nc(c3c4c(sc3n2)CCCC4)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ROG  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-({[(3S)-1-methylpiperidin-3-yl]methyl}sulfanyl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine"  
ROG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[[(3~{S})-1-methylpiperidin-3-yl]methylsulfanyl]-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ROG  "Create component"  2020-02-17  RCSB  
ROG  "Initial release"   2020-06-03  RCSB  
##
