data_RPG
# 
_chem_comp.id                                    RPG 
_chem_comp.name                                  "(13E,15S)-15-hydroxy-9-oxoprosta-10,13-dien-1-oic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H32 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "PROSTAGLANDIN A1 (PGA1)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.466 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RPG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Y41 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RPG O9  O1  O 0 1 N N N N N N 7.002  -12.391 -20.785 -1.510  3.479  -0.765 O9  RPG 1  
RPG C9  C1  C 0 1 N N N N N N 6.600  -13.554 -20.824 -0.544  3.010  -0.199 C9  RPG 2  
RPG C10 C2  C 0 1 N N N N N N 7.124  -14.636 -19.990 0.473   3.756  0.534  C10 RPG 3  
RPG C11 C3  C 0 1 N N N N N N 6.853  -15.768 -20.642 1.406   2.966  1.044  C11 RPG 4  
RPG C12 C4  C 0 1 N N S N N N 5.616  -15.604 -21.514 1.121   1.524  0.705  C12 RPG 5  
RPG C13 C5  C 0 1 N N N N N N 5.893  -16.341 -22.790 2.251   0.947  -0.108 C13 RPG 6  
RPG C14 C6  C 0 1 N N N N N N 5.391  -17.521 -23.107 2.903   -0.102 0.328  C14 RPG 7  
RPG C15 C7  C 0 1 N N S N N N 5.859  -18.112 -24.422 4.033   -0.679 -0.485 C15 RPG 8  
RPG C16 C8  C 0 1 N N N N N N 4.862  -17.810 -25.526 5.296   -0.751 0.376  C16 RPG 9  
RPG C17 C9  C 0 1 N N N N N N 5.237  -18.485 -26.842 6.408   -1.450 -0.407 C17 RPG 10 
RPG C18 C10 C 0 1 N N N N N N 6.697  -18.287 -27.210 7.671   -1.521 0.454  C18 RPG 11 
RPG C19 C11 C 0 1 N N N N N N 6.871  -17.750 -28.610 8.784   -2.220 -0.329 C19 RPG 12 
RPG C20 C12 C 0 1 N N N N N N 7.933  -18.541 -29.321 10.047  -2.292 0.532  C20 RPG 13 
RPG O15 O2  O 0 1 N N N N N N 6.078  -19.536 -24.299 4.277   0.154  -1.620 O15 RPG 14 
RPG C8  C13 C 0 1 N N R N N N 5.559  -14.094 -21.763 -0.179  1.543  -0.118 C8  RPG 15 
RPG C7  C14 C 0 1 N N N N N N 4.197  -13.504 -21.458 -1.276  0.749  0.594  C7  RPG 16 
RPG C6  C15 C 0 1 N N N N N N 3.993  -12.289 -22.349 -2.516  0.678  -0.299 C6  RPG 17 
RPG C5  C16 C 0 1 N N N N N N 3.569  -11.073 -21.546 -3.613  -0.117 0.413  C5  RPG 18 
RPG C4  C17 C 0 1 N N N N N N 2.120  -10.714 -21.852 -4.853  -0.188 -0.480 C4  RPG 19 
RPG C3  C18 C 0 1 N N N N N N 1.713  -9.475  -21.066 -5.949  -0.982 0.233  C3  RPG 20 
RPG C2  C19 C 0 1 N N N N N N 1.258  -9.806  -19.645 -7.190  -1.054 -0.660 C2  RPG 21 
RPG C1  C20 C 0 1 N N N N N N -0.251 -9.773  -19.577 -8.270  -1.836 0.041  C1  RPG 22 
RPG O1  O3  O 0 1 N N N N N N -0.871 -10.856 -19.494 -9.456  -2.028 -0.557 O1  RPG 23 
RPG O2  O4  O 0 1 N N N N N N -0.823 -8.659  -19.606 -8.068  -2.290 1.143  O2  RPG 24 
RPG H1  H1  H 0 1 N N N N N N 7.628  -14.538 -19.040 0.466   4.830  0.647  H1  RPG 25 
RPG H3  H3  H 0 1 N N N N N N 7.432  -16.676 -20.562 2.252   3.306  1.623  H3  RPG 26 
RPG H5  H5  H 0 1 N N N N N N 4.708  -15.969 -21.011 0.978   0.943  1.616  H5  RPG 27 
RPG H6  H6  H 0 1 N N N N N N 6.553  -15.871 -23.504 2.524   1.399  -1.050 H6  RPG 28 
RPG H7  H7  H 0 1 N N N N N N 4.689  -18.034 -22.467 2.629   -0.554 1.270  H7  RPG 29 
RPG H8  H8  H 0 1 N N N N N N 6.811  -17.630 -24.688 3.765   -1.681 -0.820 H8  RPG 30 
RPG H9  H9  H 0 1 N N N N N N 4.827  -16.722 -25.683 5.614   0.258  0.638  H9  RPG 31 
RPG H10 H10 H 0 1 N N N N N N 3.870  -18.168 -25.215 5.084   -1.312 1.286  H10 RPG 32 
RPG H11 H11 H 0 1 N N N N N N 4.612  -18.064 -27.643 6.090   -2.459 -0.669 H11 RPG 33 
RPG H12 H12 H 0 1 N N N N N N 5.040  -19.564 -26.752 6.620   -0.888 -1.317 H12 RPG 34 
RPG H13 H13 H 0 1 N N N N N N 7.214  -19.255 -27.136 7.990   -0.512 0.716  H13 RPG 35 
RPG H14 H14 H 0 1 N N N N N N 7.147  -17.576 -26.501 7.459   -2.083 1.364  H14 RPG 36 
RPG H15 H15 H 0 1 N N N N N N 7.171  -16.693 -28.563 8.465   -3.229 -0.591 H15 RPG 37 
RPG H16 H16 H 0 1 N N N N N N 5.921  -17.837 -29.157 8.996   -1.659 -1.239 H16 RPG 38 
RPG H17 H17 H 0 1 N N N N N N 8.060  -18.150 -30.341 9.835   -2.853 1.442  H17 RPG 39 
RPG H18 H18 H 0 1 N N N N N N 8.883  -18.454 -28.774 10.839  -2.790 -0.026 H18 RPG 40 
RPG H19 H19 H 0 1 N N N N N N 7.633  -19.598 -29.368 10.365  -1.283 0.793  H19 RPG 41 
RPG H20 H20 H 0 1 N N N N N N 6.704  -19.702 -23.604 4.521   1.062  -1.396 H20 RPG 42 
RPG H21 H21 H 0 1 N N N N N N 5.838  -13.877 -22.805 -0.005  1.141  -1.117 H21 RPG 43 
RPG H22 H22 H 0 1 N N N N N N 4.150  -13.202 -20.401 -0.918  -0.260 0.800  H22 RPG 44 
RPG H23 H23 H 0 1 N N N N N N 3.414  -14.250 -21.661 -1.531  1.242  1.532  H23 RPG 45 
RPG H24 H24 H 0 1 N N N N N N 3.213  -12.517 -23.091 -2.874  1.686  -0.505 H24 RPG 46 
RPG H25 H25 H 0 1 N N N N N N 4.937  -12.064 -22.867 -2.261  0.184  -1.237 H25 RPG 47 
RPG H26 H26 H 0 1 N N N N N N 3.669  -11.294 -20.473 -3.255  -1.126 0.619  H26 RPG 48 
RPG H27 H27 H 0 1 N N N N N N 4.216  -10.223 -21.807 -3.868  0.377  1.351  H27 RPG 49 
RPG H28 H28 H 0 1 N N N N N N 2.014  -10.514 -22.928 -5.211  0.821  -0.686 H28 RPG 50 
RPG H29 H29 H 0 1 N N N N N N 1.469  -11.555 -21.570 -4.598  -0.681 -1.417 H29 RPG 51 
RPG H30 H30 H 0 1 N N N N N N 2.575  -8.794  -21.011 -5.592  -1.991 0.439  H30 RPG 52 
RPG H31 H31 H 0 1 N N N N N N 0.886  -8.978  -21.594 -6.205  -0.489 1.171  H31 RPG 53 
RPG H32 H32 H 0 1 N N N N N N 1.615  -10.809 -19.370 -7.548  -0.045 -0.866 H32 RPG 54 
RPG H33 H33 H 0 1 N N N N N N 1.673  -9.065  -18.946 -6.935  -1.547 -1.598 H33 RPG 55 
RPG H34 H34 H 0 1 N N N N N N -1.805 -10.685 -19.459 -10.117 -2.537 -0.068 H34 RPG 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RPG C20 C19 SING N N 1  
RPG C19 C18 SING N N 2  
RPG C18 C17 SING N N 3  
RPG C17 C16 SING N N 4  
RPG C16 C15 SING N N 5  
RPG C15 O15 SING N N 6  
RPG C15 C14 SING N N 7  
RPG C14 C13 DOUB N E 8  
RPG C13 C12 SING N N 9  
RPG C6  C5  SING N N 10 
RPG C6  C7  SING N N 11 
RPG C4  C5  SING N N 12 
RPG C4  C3  SING N N 13 
RPG C8  C12 SING N N 14 
RPG C8  C7  SING N N 15 
RPG C8  C9  SING N N 16 
RPG C12 C11 SING N N 17 
RPG C3  C2  SING N N 18 
RPG C9  O9  DOUB N N 19 
RPG C9  C10 SING N N 20 
RPG C11 C10 DOUB N N 21 
RPG C2  C1  SING N N 22 
RPG O2  C1  DOUB N N 23 
RPG C1  O1  SING N N 24 
RPG C10 H1  SING N N 25 
RPG C11 H3  SING N N 26 
RPG C12 H5  SING N N 27 
RPG C13 H6  SING N N 28 
RPG C14 H7  SING N N 29 
RPG C15 H8  SING N N 30 
RPG C16 H9  SING N N 31 
RPG C16 H10 SING N N 32 
RPG C17 H11 SING N N 33 
RPG C17 H12 SING N N 34 
RPG C18 H13 SING N N 35 
RPG C18 H14 SING N N 36 
RPG C19 H15 SING N N 37 
RPG C19 H16 SING N N 38 
RPG C20 H17 SING N N 39 
RPG C20 H18 SING N N 40 
RPG C20 H19 SING N N 41 
RPG O15 H20 SING N N 42 
RPG C8  H21 SING N N 43 
RPG C7  H22 SING N N 44 
RPG C7  H23 SING N N 45 
RPG C6  H24 SING N N 46 
RPG C6  H25 SING N N 47 
RPG C5  H26 SING N N 48 
RPG C5  H27 SING N N 49 
RPG C4  H28 SING N N 50 
RPG C4  H29 SING N N 51 
RPG C3  H30 SING N N 52 
RPG C3  H31 SING N N 53 
RPG C2  H32 SING N N 54 
RPG C2  H33 SING N N 55 
RPG O1  H34 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RPG InChI            InChI                1.03  "InChI=1S/C20H32O4/c1-2-3-6-9-17(21)14-12-16-13-15-19(22)18(16)10-7-4-5-8-11-20(23)24/h12-18,21H,2-11H2,1H3,(H,23,24)/b14-12+/t16-,17-,18+/m0/s1" 
RPG InChIKey         InChI                1.03  BGKHCLZFGPIKKU-LDDQNKHRSA-N                                                                                                                       
RPG SMILES_CANONICAL CACTVS               3.385 "CCCCC[C@H](O)\C=C\[C@H]1C=CC(=O)[C@@H]1CCCCCCC(O)=O"                                                                                             
RPG SMILES           CACTVS               3.385 "CCCCC[CH](O)C=C[CH]1C=CC(=O)[CH]1CCCCCCC(O)=O"                                                                                                   
RPG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCC[C@@H](/C=C/[C@H]1C=CC(=O)[C@@H]1CCCCCCC(=O)O)O"                                                                                            
RPG SMILES           "OpenEye OEToolkits" 2.0.6 "CCCCCC(C=CC1C=CC(=O)C1CCCCCCC(=O)O)O"                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           RPG 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{R},5~{S})-2-oxidanylidene-5-[(~{E},3~{S})-3-oxidanyloct-1-enyl]cyclopent-3-en-1-yl]heptanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RPG "Create component" 2017-08-17 RCSB 
RPG "Initial release"  2018-12-26 RCSB 
RPG "Modify synonyms"  2021-03-01 PDBE 
RPG "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      RPG 
_pdbx_chem_comp_synonyms.name         "PROSTAGLANDIN A1 (PGA1)" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            RPG 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C11 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
