data_RVG
#

_chem_comp.id                                   RVG
_chem_comp.name                                 "6-deoxy-2,3-di-O-methyl-beta-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H16 O5"
_chem_comp.mon_nstd_parent_comp_id              YYK
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-26
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       192.210
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RVG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1SR5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RVG  O4   O4   O  0  1  N  N  N  29.621  4.514  41.063   2.683  -0.674   0.079  O4   RVG   1  
RVG  C4   C4   C  0  1  N  N  R  29.733  4.227  42.541   1.460  -0.049  -0.319  C4   RVG   2  
RVG  C5   C5   C  0  1  N  N  R  31.093  3.563  43.266   1.386   1.357   0.280  C5   RVG   3  
RVG  O5   O5   O  0  1  N  N  N  30.433  3.287  44.576   0.138   1.958  -0.070  O5   RVG   4  
RVG  C6   C6   C  0  1  N  N  N  32.082  4.772  43.219   2.534   2.207  -0.269  C6   RVG   5  
RVG  C3   C3   C  0  1  N  N  S  28.472  3.274  42.470   0.275  -0.875   0.189  C3   RVG   6  
RVG  O3   O3   O  0  1  N  N  N  27.331  3.937  41.851   0.295  -2.167  -0.423  O3   RVG   7  
RVG  C3O  C3O  C  0  1  N  N  N  26.603  3.208  40.532   1.038  -3.144   0.308  C3O  RVG   8  
RVG  C2   C2   C  0  1  N  N  R  28.156  2.717  44.074  -1.028  -0.156  -0.175  C2   RVG   9  
RVG  O2   O2   O  0  1  N  N  N  27.026  1.834  43.923  -2.139  -0.881   0.357  O2   RVG  10  
RVG  C2O  C2O  C  0  1  N  N  N  25.829  1.898  45.031  -3.336  -0.757  -0.413  C2O  RVG  11  
RVG  C1   C1   C  0  1  N  N  R  29.520  2.008  44.564  -1.006   1.255   0.419  C1   RVG  12  
RVG  H4   H4   H  0  1  N  N  N  29.460  5.127  43.112   1.421   0.015  -1.406  H4   RVG  13  
RVG  H5   H5   H  0  1  N  N  N  31.454  2.673  42.730   1.467   1.295   1.366  H5   RVG  14  
RVG  H61  H61  H  0  1  N  N  N  33.041  4.479  43.671   2.452   2.270  -1.354  H61  RVG  15  
RVG  H62  H62  H  0  1  N  N  N  32.245  5.071  42.173   2.481   3.209   0.158  H62  RVG  16  
RVG  H63  H63  H  0  1  N  N  N  31.655  5.617  43.780   3.486   1.748  -0.002  H63  RVG  17  
RVG  H3   H3   H  0  1  N  N  N  28.748  2.387  41.881   0.343  -0.984   1.271  H3   RVG  18  
RVG  H22  H22  H  0  1  N  N  N  25.765  3.830  40.185   0.602  -3.265   1.300  H22  RVG  19  
RVG  H23  H23  H  0  1  N  N  N  27.338  3.099  39.721   1.005  -4.096  -0.221  H23  RVG  20  
RVG  H24  H24  H  0  1  N  N  N  26.228  2.216  40.823   2.073  -2.817   0.403  H24  RVG  21  
RVG  H2   H4O  H  0  1  N  N  N  27.932  3.585  44.711  -1.119  -0.094  -1.260  H2   RVG  22  
RVG  H26  H26  H  0  1  N  N  N  25.049  1.167  44.772  -3.630   0.292  -0.461  H26  RVG  23  
RVG  H27  H27  H  0  1  N  N  N  26.237  1.662  46.025  -3.161  -1.131  -1.421  H27  RVG  24  
RVG  H28  H28  H  0  1  N  N  N  25.394  2.908  45.043  -4.132  -1.335   0.057  H28  RVG  25  
RVG  H1   H1   H  0  1  N  N  N  29.860  1.084  44.073  -0.956   1.191   1.506  H1   RVG  26  
RVG  HO4  H6   H  0  1  N  Y  N  30.312  5.112  40.803   3.477  -0.203  -0.210  HO4  RVG  27  
RVG  O1   O1   O  0  1  N  Y  N  29.082  2.083  45.907  -2.193   1.952   0.036  O1   RVG  28  
RVG  HO1  H1O  H  0  1  N  Y  N  28.495  1.359  46.090  -2.247   2.855   0.377  HO1  RVG  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RVG  O4   C4   SING  N  N   1  
RVG  C4   C3   SING  N  N   2  
RVG  C4   C5   SING  N  N   3  
RVG  C5   C6   SING  N  N   4  
RVG  C5   O5   SING  N  N   5  
RVG  O5   C1   SING  N  N   6  
RVG  C3   O3   SING  N  N   7  
RVG  C3   C2   SING  N  N   8  
RVG  O3   C3O  SING  N  N   9  
RVG  C2   O2   SING  N  N  10  
RVG  C2   C1   SING  N  N  11  
RVG  O2   C2O  SING  N  N  12  
RVG  C4   H4   SING  N  N  13  
RVG  C5   H5   SING  N  N  14  
RVG  C6   H61  SING  N  N  15  
RVG  C6   H62  SING  N  N  16  
RVG  C6   H63  SING  N  N  17  
RVG  C3   H3   SING  N  N  18  
RVG  C3O  H22  SING  N  N  19  
RVG  C3O  H23  SING  N  N  20  
RVG  C3O  H24  SING  N  N  21  
RVG  C2   H2   SING  N  N  22  
RVG  C2O  H26  SING  N  N  23  
RVG  C2O  H27  SING  N  N  24  
RVG  C2O  H28  SING  N  N  25  
RVG  C1   H1   SING  N  N  26  
RVG  O4   HO4  SING  N  N  27  
RVG  C1   O1   SING  N  N  28  
RVG  O1   HO1  SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RVG  SMILES            ACDLabs               12.01  "OC1C(OC)C(OC)C(OC1C)O"  
RVG  InChI             InChI                 1.03   "InChI=1S/C8H16O5/c1-4-5(9)6(11-2)7(12-3)8(10)13-4/h4-10H,1-3H3/t4-,5-,6+,7-,8-/m1/s1"  
RVG  InChIKey          InChI                 1.03   SXWBIRCAXZNEGK-JAJWTYFOSA-N  
RVG  SMILES_CANONICAL  CACTVS                3.385  "CO[C@H]1[C@H](O)O[C@H](C)[C@@H](O)[C@@H]1OC"  
RVG  SMILES            CACTVS                3.385  "CO[CH]1[CH](O)O[CH](C)[CH](O)[CH]1OC"  
RVG  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)OC)OC)O"  
RVG  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(C(C(C(O1)O)OC)OC)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RVG  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-deoxy-2,3-di-O-methyl-beta-D-glucopyranose"  
RVG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{R},4~{S},5~{R},6~{R})-3,4-dimethoxy-6-methyl-oxane-2,5-diol"  
#
_pdbx_chem_comp_related.comp_id            RVG
_pdbx_chem_comp_related.related_comp_id    YYK
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  RVG  C1   YYK  C1   "Carbohydrate core"  
 2  RVG  C2   YYK  C2   "Carbohydrate core"  
 3  RVG  C3   YYK  C3   "Carbohydrate core"  
 4  RVG  C4   YYK  C4   "Carbohydrate core"  
 5  RVG  C5   YYK  C5   "Carbohydrate core"  
 6  RVG  C6   YYK  C6   "Carbohydrate core"  
 7  RVG  O1   YYK  O1   "Carbohydrate core"  
 8  RVG  O2   YYK  O2   "Carbohydrate core"  
 9  RVG  O3   YYK  O3   "Carbohydrate core"  
10  RVG  O4   YYK  O4   "Carbohydrate core"  
11  RVG  O5   YYK  O5   "Carbohydrate core"  
12  RVG  H1   YYK  H1   "Carbohydrate core"  
13  RVG  HO1  YYK  HO1  "Carbohydrate core"  
14  RVG  H3   YYK  H3   "Carbohydrate core"  
15  RVG  H4   YYK  H4   "Carbohydrate core"  
16  RVG  H2   YYK  H2   "Carbohydrate core"  
17  RVG  H5   YYK  H5   "Carbohydrate core"  
18  RVG  HO4  YYK  HO4  "Carbohydrate core"  
19  RVG  H61  YYK  H61  "Carbohydrate core"  
20  RVG  H62  YYK  H62  "Carbohydrate core"  
21  RVG  H63  YYK  H63  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
RVG  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
RVG  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
RVG  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
RVG  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RVG  "Create component"          2020-02-26  RCSB  
RVG  "Other modification"        2020-04-02  RCSB  
RVG  "Modify atom id"            2020-07-17  RCSB  
RVG  "Modify component atom id"  2020-07-17  RCSB  
RVG  "Initial release"           2020-07-29  RCSB  
##
