data_SOG
#

_chem_comp.id                                   SOG
_chem_comp.name                                 "octyl 1-thio-beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C14 H28 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL; 1-S-OCTYL-BETA-D-THIOGLUCOSIDE; octyl
1-thio-beta-D-glucoside; octyl 1-thio-D-glucoside; octyl 1-thio-glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-01-21
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       308.434
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SOG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1J2Z
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  SOG  "2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL"  PDB  ?  
2  SOG  1-S-OCTYL-BETA-D-THIOGLUCOSIDE                                  PDB  ?  
3  SOG  "octyl 1-thio-beta-D-glucoside"                                 PDB  ?  
4  SOG  "octyl 1-thio-D-glucoside"                                      PDB  ?  
5  SOG  "octyl 1-thio-glucoside"                                        PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SOG  C1      C1      C  0  1  N  N  S  38.265  12.229  130.645  -0.632  -0.191  -1.979  C1      SOG   1  
SOG  C2      C2      C  0  1  N  N  R  38.184  11.411  131.958  -1.430   0.159  -3.237  C2      SOG   2  
SOG  C3      C3      C  0  1  N  N  S  38.214  12.367  133.159  -0.679  -0.364  -4.466  C3      SOG   3  
SOG  C4      C4      C  0  1  N  N  S  39.524  13.160  133.101   0.753   0.177  -4.432  C4      SOG   4  
SOG  C5      C5      C  0  1  N  N  R  39.573  13.960  131.774   1.386  -0.173  -3.083  C5      SOG   5  
SOG  C6      C6      C  0  1  N  N  N  40.872  14.746  131.664   2.829   0.334  -3.053  C6      SOG   6  
SOG  "C1'"   "C1'"   C  0  1  N  N  N  37.583  11.893  128.368  -0.391  -0.151   0.789  "C1'"   SOG   7  
SOG  "C2'"   "C2'"   C  0  1  N  N  N  38.575  11.937  127.222  -0.956   0.240   2.155  "C2'"   SOG   8  
SOG  "C3'"   "C3'"   C  0  1  N  N  N  37.878  11.752  125.887   0.005  -0.213   3.255  "C3'"   SOG   9  
SOG  "C4'"   "C4'"   C  0  1  N  N  N  38.868  11.791  124.732  -0.559   0.177   4.621  "C4'"   SOG  10  
SOG  "C5'"   "C5'"   C  0  1  N  N  N  38.162  11.603  123.396   0.402  -0.276   5.721  "C5'"   SOG  11  
SOG  "C6'"   "C6'"   C  0  1  N  N  N  39.128  11.780  122.243  -0.162   0.114   7.087  "C6'"   SOG  12  
SOG  "C7'"   "C7'"   C  0  1  N  N  N  38.441  11.598  120.910   0.799  -0.339   8.186  "C7'"   SOG  13  
SOG  "C8'"   "C8'"   C  0  1  N  N  N  39.427  11.782  119.781   0.234   0.052   9.553  "C8'"   SOG  14  
SOG  S1      S1      S  0  1  N  N  N  38.259  11.351  129.509  -1.532   0.387  -0.514  S1      SOG  15  
SOG  O2      O2      O  0  1  N  N  N  36.988  10.642  131.981  -2.721  -0.449  -3.170  O2      SOG  16  
SOG  O3      O3      O  0  1  N  N  N  38.152  11.630  134.363  -1.332   0.081  -5.657  O3      SOG  17  
SOG  O4      O4      O  0  1  N  N  N  39.598  14.048  134.203   1.515  -0.414  -5.486  O4      SOG  18  
SOG  O5      O5      O  0  1  N  N  N  39.479  13.033  130.655   0.646   0.437  -2.029  O5      SOG  19  
SOG  O6      O6      O  0  1  N  N  N  40.747  15.983  132.339   3.425   0.002  -1.797  O6      SOG  20  
SOG  H1      H1      H  0  1  N  N  N  37.377  12.899  130.572  -0.503  -1.272  -1.921  H1      SOG  21  
SOG  H2      H2      H  0  1  N  N  N  39.056  10.719  132.013  -1.540   1.241  -3.311  H2      SOG  22  
SOG  H3      H3      H  0  1  N  N  N  37.340  13.058  133.123  -0.659  -1.454  -4.447  H3      SOG  23  
SOG  H4      H4      H  0  1  N  N  N  40.389  12.458  133.146   0.737   1.259  -4.557  H4      SOG  24  
SOG  H5      H5      H  0  1  N  N  N  38.719  14.677  131.756   1.381  -1.255  -2.951  H5      SOG  25  
SOG  H61     H61     H  0  1  N  N  N  41.747  14.158  132.026   3.396  -0.131  -3.859  H61     SOG  26  
SOG  H62     H62     H  0  1  N  N  N  41.192  14.878  130.604   2.836   1.416  -3.183  H62     SOG  27  
SOG  "H1'1"  "H1'1"  H  0  0  N  N  N  37.113  12.883  128.572   0.576   0.329   0.645  "H1'1"  SOG  28  
SOG  "H1'2"  "H1'2"  H  0  0  N  N  N  36.650  11.337  128.112  -0.270  -1.233   0.742  "H1'2"  SOG  29  
SOG  "H2'1"  "H2'1"  H  0  0  N  N  N  39.182  12.871  127.241  -1.924  -0.240   2.299  "H2'1"  SOG  30  
SOG  "H2'2"  "H2'2"  H  0  0  N  N  N  39.396  11.196  127.361  -1.077   1.322   2.202  "H2'2"  SOG  31  
SOG  "H3'1"  "H3'1"  H  0  0  N  N  N  37.268  10.818  125.870   0.973   0.266   3.111  "H3'1"  SOG  32  
SOG  "H3'2"  "H3'2"  H  0  0  N  N  N  37.058  12.495  125.747   0.126  -1.296   3.208  "H3'2"  SOG  33  
SOG  "H4'1"  "H4'1"  H  0  0  N  N  N  39.477  12.724  124.745  -1.527  -0.302   4.765  "H4'1"  SOG  34  
SOG  "H4'2"  "H4'2"  H  0  0  N  N  N  39.688  11.049  124.870  -0.680   1.259   4.668  "H4'2"  SOG  35  
SOG  "H5'1"  "H5'1"  H  0  0  N  N  N  37.634  10.622  123.343   1.370   0.203   5.577  "H5'1"  SOG  36  
SOG  "H5'2"  "H5'2"  H  0  0  N  N  N  37.278  12.275  123.299   0.523  -1.358   5.674  "H5'2"  SOG  37  
SOG  "H6'1"  "H6'1"  H  0  0  N  N  N  39.654  12.761  122.299  -1.130  -0.365   7.231  "H6'1"  SOG  38  
SOG  "H6'2"  "H6'2"  H  0  0  N  N  N  40.009  11.104  122.342  -0.283   1.197   7.134  "H6'2"  SOG  39  
SOG  "H7'1"  "H7'1"  H  0  0  N  N  N  37.913  10.618  120.845   1.767   0.140   8.043  "H7'1"  SOG  40  
SOG  "H7'2"  "H7'2"  H  0  0  N  N  N  37.557  12.269  120.803   0.920  -1.421   8.139  "H7'2"  SOG  41  
SOG  "H8'1"  "H8'1"  H  0  0  N  N  N  38.919  11.647  118.797   0.920  -0.271  10.336  "H8'1"  SOG  42  
SOG  "H8'2"  "H8'2"  H  0  0  N  N  N  39.954  12.762  119.846   0.113   1.134   9.600  "H8'2"  SOG  43  
SOG  "H8'3"  "H8'3"  H  0  0  N  N  N  40.310  11.110  119.887  -0.733  -0.428   9.697  "H8'3"  SOG  44  
SOG  HO2     HO2     H  0  1  N  Y  N  36.938  10.140  132.786  -3.158  -0.092  -2.384  HO2     SOG  45  
SOG  HO3     HO3     H  0  1  N  Y  N  38.170  12.221  135.106  -2.228  -0.281  -5.637  HO3     SOG  46  
SOG  HO4     HO4     H  0  1  N  Y  N  40.410  14.539  134.167   1.083  -0.168  -6.315  HO4     SOG  47  
SOG  HO6     HO6     H  0  1  N  Y  N  41.557  16.473  132.270   4.331   0.339  -1.820  HO6     SOG  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SOG  C1     C2      SING  N  N   1  
SOG  C1     S1      SING  N  N   2  
SOG  C1     O5      SING  N  N   3  
SOG  C1     H1      SING  N  N   4  
SOG  C2     C3      SING  N  N   5  
SOG  C2     O2      SING  N  N   6  
SOG  C2     H2      SING  N  N   7  
SOG  C3     C4      SING  N  N   8  
SOG  C3     O3      SING  N  N   9  
SOG  C3     H3      SING  N  N  10  
SOG  C4     C5      SING  N  N  11  
SOG  C4     O4      SING  N  N  12  
SOG  C4     H4      SING  N  N  13  
SOG  C5     C6      SING  N  N  14  
SOG  C5     O5      SING  N  N  15  
SOG  C5     H5      SING  N  N  16  
SOG  C6     O6      SING  N  N  17  
SOG  C6     H61     SING  N  N  18  
SOG  C6     H62     SING  N  N  19  
SOG  "C1'"  "C2'"   SING  N  N  20  
SOG  "C1'"  S1      SING  N  N  21  
SOG  "C1'"  "H1'1"  SING  N  N  22  
SOG  "C1'"  "H1'2"  SING  N  N  23  
SOG  "C2'"  "C3'"   SING  N  N  24  
SOG  "C2'"  "H2'1"  SING  N  N  25  
SOG  "C2'"  "H2'2"  SING  N  N  26  
SOG  "C3'"  "C4'"   SING  N  N  27  
SOG  "C3'"  "H3'1"  SING  N  N  28  
SOG  "C3'"  "H3'2"  SING  N  N  29  
SOG  "C4'"  "C5'"   SING  N  N  30  
SOG  "C4'"  "H4'1"  SING  N  N  31  
SOG  "C4'"  "H4'2"  SING  N  N  32  
SOG  "C5'"  "C6'"   SING  N  N  33  
SOG  "C5'"  "H5'1"  SING  N  N  34  
SOG  "C5'"  "H5'2"  SING  N  N  35  
SOG  "C6'"  "C7'"   SING  N  N  36  
SOG  "C6'"  "H6'1"  SING  N  N  37  
SOG  "C6'"  "H6'2"  SING  N  N  38  
SOG  "C7'"  "C8'"   SING  N  N  39  
SOG  "C7'"  "H7'1"  SING  N  N  40  
SOG  "C7'"  "H7'2"  SING  N  N  41  
SOG  "C8'"  "H8'1"  SING  N  N  42  
SOG  "C8'"  "H8'2"  SING  N  N  43  
SOG  "C8'"  "H8'3"  SING  N  N  44  
SOG  O2     HO2     SING  N  N  45  
SOG  O3     HO3     SING  N  N  46  
SOG  O4     HO4     SING  N  N  47  
SOG  O6     HO6     SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SOG  SMILES            ACDLabs               10.04  "S(CCCCCCCC)C1OC(C(O)C(O)C1O)CO"  
SOG  SMILES_CANONICAL  CACTVS                3.341  "CCCCCCCCS[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O"  
SOG  SMILES            CACTVS                3.341  "CCCCCCCCS[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"  
SOG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCCCCCCCS[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O"  
SOG  SMILES            "OpenEye OEToolkits"  1.5.0  "CCCCCCCCSC1C(C(C(C(O1)CO)O)O)O"  
SOG  InChI             InChI                 1.03   "InChI=1S/C14H28O5S/c1-2-3-4-5-6-7-8-20-14-13(18)12(17)11(16)10(9-15)19-14/h10-18H,2-9H2,1H3/t10-,11-,12+,13-,14+/m1/s1"  
SOG  InChIKey          InChI                 1.03   CGVLVOOFCGWBCS-RGDJUOJXSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SOG  "SYSTEMATIC NAME"  ACDLabs               10.04  "octyl 1-thio-beta-D-glucopyranoside"  
SOG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-octylsulfanyl-oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
SOG  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
SOG  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
SOG  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
SOG  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SOG  "Create component"          2003-01-21  RCSB  
SOG  "Modify descriptor"         2011-06-04  RCSB  
SOG  "Other modification"        2020-07-03  RCSB  
SOG  "Modify name"               2020-07-17  RCSB  
SOG  "Modify synonyms"           2020-07-17  RCSB  
SOG  "Modify linking type"       2020-07-17  RCSB  
SOG  "Modify leaving atom flag"  2020-07-17  RCSB  
##
