data_SPG
# 
_chem_comp.id                                    SPG 
_chem_comp.name                                  
;2-DEAMINO-6-DEOXY-6THIOPHOSPHITE-5'-PHOSPHATE GUANOSINE
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H15 N4 O10 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2008-10-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      PGS 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        445.259 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SPG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1NHT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SPG P      P    P 0 1 N N N -8.232  48.672 47.106 5.367  -1.257 -0.874 P      SPG 1  
SPG O1P    O1P  O 0 1 N N N -8.853  47.443 46.550 4.177  -1.496 -1.721 O1P    SPG 2  
SPG O2P    O2P  O 0 1 N N N -7.355  48.334 48.225 6.047  0.142  -1.286 O2P    SPG 3  
SPG O3P    O3P  O 0 1 N N N -7.448  49.413 46.070 6.425  -2.452 -1.087 O3P    SPG 4  
SPG S6     S6   S 0 1 N N N -9.790  49.588 47.349 4.782  -1.186 1.162  S6     SPG 5  
SPG O1A    O1A  O 0 1 N N N -16.095 54.464 48.516 -5.231 -2.436 -0.904 O1A    SPG 6  
SPG PA     PA   P 0 1 N N N -16.162 53.863 49.877 -5.938 -1.569 0.064  PA     SPG 7  
SPG O2A    O2A  O 0 1 N N N -17.491 54.091 50.447 -6.541 -2.472 1.253  O2A    SPG 8  
SPG O3A    O3A  O 0 1 N N N -15.848 52.415 49.830 -7.137 -0.796 -0.683 O3A    SPG 9  
SPG "O5'"  O5*  O 0 1 N N N -15.066 54.587 50.790 -4.906 -0.496 0.676  "O5'"  SPG 10 
SPG "C5'"  C5*  C 0 1 N N N -15.038 54.352 52.255 -4.320 0.192  -0.431 "C5'"  SPG 11 
SPG "C4'"  C4*  C 0 1 N N R -13.710 54.405 52.874 -3.323 1.232  0.084  "C4'"  SPG 12 
SPG "O4'"  O4*  O 0 1 N N N -13.096 53.224 52.453 -2.202 0.576  0.700  "O4'"  SPG 13 
SPG "C3'"  C3*  C 0 1 N N S -12.720 55.519 52.577 -2.778 2.064  -1.093 "C3'"  SPG 14 
SPG "O3'"  O3*  O 0 1 N N N -11.719 55.447 53.622 -3.094 3.446  -0.917 "O3'"  SPG 15 
SPG "C2'"  C2*  C 0 1 N N R -11.988 55.005 51.331 -1.247 1.846  -1.038 "C2'"  SPG 16 
SPG "O2'"  O2*  O 0 1 N N N -10.579 55.213 51.137 -0.547 3.065  -1.298 "O2'"  SPG 17 
SPG "C1'"  C1*  C 0 1 N N R -11.863 53.565 51.782 -1.039 1.389  0.432  "C1'"  SPG 18 
SPG N9     N9   N 0 1 Y N N -11.578 52.962 50.575 0.186  0.596  0.560  N9     SPG 19 
SPG C8     C8   C 0 1 Y N N -12.480 52.358 49.704 0.287  -0.758 0.438  C8     SPG 20 
SPG N7     N7   N 0 1 Y N N -11.950 51.510 48.911 1.522  -1.129 0.611  N7     SPG 21 
SPG C5     C5   C 0 1 Y N N -10.620 51.536 49.236 2.290  -0.040 0.855  C5     SPG 22 
SPG C6     C6   C 0 1 Y N N -9.636  50.788 48.675 3.657  0.169  1.110  C6     SPG 23 
SPG N1     N1   N 1 1 Y N N -8.423  51.008 49.267 4.080  1.414  1.311  N1     SPG 24 
SPG C2     C2   C 0 1 Y N N -8.268  51.962 50.237 3.245  2.435  1.273  C2     SPG 25 
SPG N3     N3   N 0 1 Y N N -9.241  52.712 50.773 1.958  2.287  1.038  N3     SPG 26 
SPG C4     C4   C 0 1 Y N N -10.384 52.412 50.239 1.443  1.081  0.820  C4     SPG 27 
SPG HOP2   2HOP H 0 0 N N N -6.957  49.120 48.580 6.816  0.259  -0.712 HOP2   SPG 28 
SPG HOP3   3HOP H 0 0 N N N -7.050  50.199 46.425 6.665  -2.449 -2.024 HOP3   SPG 29 
SPG HOA2   2HOA H 0 0 N N N -17.533 53.707 51.315 -7.153 -3.100 0.844  HOA2   SPG 30 
SPG HOA3   3HOA H 0 0 N N N -15.890 52.031 50.698 -7.570 -0.243 -0.018 HOA3   SPG 31 
SPG "H5'1" 1H5* H 0 0 N N N -15.522 53.414 52.528 -5.101 0.690  -1.004 "H5'1" SPG 32 
SPG "H5'2" 2H5* H 0 0 N N N -15.623 55.159 52.694 -3.801 -0.524 -1.069 "H5'2" SPG 33 
SPG "H4'"  H4*  H 0 1 N N N -13.855 54.363 53.957 -3.811 1.887  0.806  "H4'"  SPG 34 
SPG "H3'"  H3*  H 0 1 N N N -13.126 56.525 52.518 -3.182 1.699  -2.037 "H3'"  SPG 35 
SPG "HO3'" *HO3 H 0 0 N N N -12.122 55.013 54.386 -2.704 3.919  -1.665 "HO3'" SPG 36 
SPG "H2'"  H2*  H 0 1 N N N -12.609 55.131 50.442 -0.938 1.067  -1.735 "H2'"  SPG 37 
SPG "HO2'" *HO2 H 0 0 N N N -10.137 54.364 51.018 -0.716 3.293  -2.222 "HO2'" SPG 38 
SPG "H1'"  H1*  H 0 1 N N N -11.032 53.465 52.484 -1.010 2.250  1.101  "H1'"  SPG 39 
SPG H8     H8   H 0 1 N N N -13.553 52.529 49.742 -0.537 -1.424 0.229  H8     SPG 40 
SPG HN1    HN1  H 0 1 N N N -7.609  50.487 48.972 5.020  1.574  1.488  HN1    SPG 41 
SPG H2     H2   H 0 1 N N N -7.252  52.145 50.627 3.631  3.429  1.441  H2     SPG 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SPG P     O1P    DOUB N N 1  
SPG P     O2P    SING N N 2  
SPG P     O3P    SING N N 3  
SPG P     S6     SING N N 4  
SPG O2P   HOP2   SING N N 5  
SPG O3P   HOP3   SING N N 6  
SPG S6    C6     SING N N 7  
SPG O1A   PA     DOUB N N 8  
SPG PA    O2A    SING N N 9  
SPG PA    O3A    SING N N 10 
SPG PA    "O5'"  SING N N 11 
SPG O2A   HOA2   SING N N 12 
SPG O3A   HOA3   SING N N 13 
SPG "O5'" "C5'"  SING N N 14 
SPG "C5'" "C4'"  SING N N 15 
SPG "C5'" "H5'1" SING N N 16 
SPG "C5'" "H5'2" SING N N 17 
SPG "C4'" "O4'"  SING N N 18 
SPG "C4'" "C3'"  SING N N 19 
SPG "C4'" "H4'"  SING N N 20 
SPG "O4'" "C1'"  SING N N 21 
SPG "C3'" "O3'"  SING N N 22 
SPG "C3'" "C2'"  SING N N 23 
SPG "C3'" "H3'"  SING N N 24 
SPG "O3'" "HO3'" SING N N 25 
SPG "C2'" "O2'"  SING N N 26 
SPG "C2'" "C1'"  SING N N 27 
SPG "C2'" "H2'"  SING N N 28 
SPG "O2'" "HO2'" SING N N 29 
SPG "C1'" N9     SING N N 30 
SPG "C1'" "H1'"  SING N N 31 
SPG N9    C8     SING Y N 32 
SPG N9    C4     SING Y N 33 
SPG C8    N7     DOUB Y N 34 
SPG C8    H8     SING N N 35 
SPG N7    C5     SING Y N 36 
SPG C5    C6     SING Y N 37 
SPG C5    C4     DOUB Y N 38 
SPG C6    N1     DOUB Y N 39 
SPG N1    C2     SING Y N 40 
SPG N1    HN1    SING N N 41 
SPG C2    N3     DOUB Y N 42 
SPG C2    H2     SING N N 43 
SPG N3    C4     SING Y N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SPG SMILES           ACDLabs              10.04 "O=P(O)(O)Sc1c2ncn(c2nc[nH+]1)C3OC(C(O)C3O)COP(=O)(O)O" 
SPG InChI            InChI                1.02b 
"InChI=1/C10H14N4O10P2S/c15-6-4(1-23-25(17,18)19)24-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)27-26(20,21)22/h2-4,6-7,10,15-16H,1H2,(H2,17,18,19)(H2,20,21,22)/p+1/t4-,6-,7-,10-/m1/s1/fC10H15N4O10P2S/h12,17-18,20-21H/q+1" 
SPG InChIKey         InChI                1.02b NYBPOGVUIOPXHI-YMLKADMZDU 
SPG SMILES_CANONICAL CACTVS               3.341 "O[C@@H]1[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]1O)n2cnc3c(S[P](O)(O)=O)[nH+]cnc23" 
SPG SMILES           CACTVS               3.341 "O[CH]1[CH](CO[P](O)(O)=O)O[CH]([CH]1O)n2cnc3c(S[P](O)(O)=O)[nH+]cnc23" 
SPG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1[nH+]c(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)SP(=O)(O)O" 
SPG SMILES           "OpenEye OEToolkits" 1.5.0 "c1[nH+]c(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)SP(=O)(O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SPG "SYSTEMATIC NAME" ACDLabs              10.04 "9-(5-O-phosphono-beta-D-ribofuranosyl)-6-(phosphonosulfanyl)-9H-purin-1-ium"                                
SPG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]purin-1-ium-6-yl]sulfanylphosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SPG "Create component" 1999-07-08 RCSB 
# 
