data_XVG
# 
_chem_comp.id                                    XVG 
_chem_comp.name                                  "1-[(2S)-2-{[(2Z)-2-(2-amino-5-chloro-1,3-thiazol-4-yl)-2-{[(2-carboxypropan-2-yl)oxy]imino}acetyl]amino}-3-oxopropyl]-4-{[2-(5,6-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)ethyl]carbamoyl}-2,5-dihydro-1H-pyrazole-3-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H27 Cl N8 O12 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-01-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        723.068 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XVG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LC4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XVG C1  C1  C  0 1 N N N N N N -6.152  43.145 -15.801 -9.451  -0.204 -0.100 C1  XVG 1  
XVG C2  C2  C  0 1 N N N N N N -7.104  42.605 -14.738 -8.460  -1.043 -0.909 C2  XVG 2  
XVG C3  C3  C  0 1 N N N N N N -6.307  42.086 -13.542 -8.448  -0.559 -2.360 C3  XVG 3  
XVG O1  O1  O  0 1 N N N N N N -7.879  41.542 -15.378 -7.152  -0.905 -0.350 O1  XVG 4  
XVG N1  N1  N  0 1 N N N N N N -8.751  40.874 -14.463 -6.665  0.425  -0.343 N1  XVG 5  
XVG C4  C4  C  0 1 N N N N N N -9.234  39.795 -14.976 -5.483  0.684  0.141  C4  XVG 6  
XVG C5  C5  C  0 1 N N N N N N -8.707  39.275 -16.281 -4.695  -0.392 0.787  C5  XVG 7  
XVG O2  O2  O  0 1 N N N N N N -9.255  39.582 -17.331 -5.103  -1.536 0.774  O2  XVG 8  
XVG N2  N2  N  0 1 N N N N N N -7.596  38.559 -16.268 -3.525  -0.101 1.390  N2  XVG 9  
XVG C6  C6  C  0 1 N N S N N N -7.167  37.763 -17.401 -2.799  -1.142 2.122  C6  XVG 10 
XVG C7  C7  C  0 1 N N N N N N -6.272  36.614 -16.905 -3.335  -1.234 3.527  C7  XVG 11 
XVG O3  O3  O  0 1 N N N N N N -6.211  36.332 -15.769 -4.230  -0.505 3.882  O3  XVG 12 
XVG C8  C8  C  0 1 N N N N N N -6.399  38.576 -18.441 -1.311  -0.791 2.165  C8  XVG 13 
XVG N3  N3  N  0 1 N N N N N N -5.028  38.883 -18.080 -0.816  -0.584 0.797  N3  XVG 14 
XVG C9  C9  C  0 1 N N N N N N -4.686  39.821 -17.040 0.599   -0.164 0.804  C9  XVG 15 
XVG C10 C10 C  0 1 N N N N N N -3.243  39.462 -17.039 1.308   -1.230 -0.004 C10 XVG 16 
XVG C11 C11 C  0 1 N N N N N N -2.274  40.221 -17.592 2.740   -1.295 -0.308 C11 XVG 17 
XVG O4  O4  O  0 1 N N N N N N -2.614  40.834 -18.597 3.162   -2.147 -1.068 O4  XVG 18 
XVG N4  N4  N  0 1 N N N N N N -1.021  40.178 -17.151 3.589   -0.412 0.253  N4  XVG 19 
XVG C12 C12 C  0 1 N N N N N N 0.109   40.629 -17.946 5.020   -0.477 -0.051 C12 XVG 20 
XVG C13 C13 C  0 1 N N N N N N 0.483   42.063 -17.625 5.754   0.629  0.710  C13 XVG 21 
XVG N5  N5  N  0 1 N N N N N N 1.692   42.468 -18.325 7.186   0.563  0.406  N5  XVG 22 
XVG C14 C14 C  0 1 N N N N N N 2.981   42.206 -17.860 7.779   1.219  -0.608 C14 XVG 23 
XVG O5  O5  O  0 1 N N N N N N 3.224   41.627 -16.820 7.221   1.947  -1.404 O5  XVG 24 
XVG C15 C15 C  0 1 Y N N N N N 3.914   42.725 -18.901 9.222   0.905  -0.590 C15 XVG 25 
XVG C16 C16 C  0 1 Y N N N N N 5.299   42.727 -18.972 10.302  1.282  -1.373 C16 XVG 26 
XVG C17 C17 C  0 1 Y N N N N N 5.907   43.282 -20.090 11.569  0.794  -1.081 C17 XVG 27 
XVG O6  O6  O  0 1 N N N N N N 7.264   43.334 -20.245 12.629  1.163  -1.846 O6  XVG 28 
XVG C18 C18 C  0 1 Y N N N N N 5.128   43.819 -21.129 11.758  -0.071 -0.005 C18 XVG 29 
XVG O7  O7  O  0 1 N N N N N N 5.779   44.349 -22.206 13.001  -0.543 0.273  O7  XVG 30 
XVG C19 C19 C  0 1 Y N N N N N 3.743   43.800 -21.055 10.681  -0.454 0.785  C19 XVG 31 
XVG C20 C20 C  0 1 Y N N N N N 3.149   43.258 -19.928 9.413   0.029  0.499  C20 XVG 32 
XVG C21 C21 C  0 1 N N N N N N 1.713   43.081 -19.580 8.081   -0.155 1.108  C21 XVG 33 
XVG O8  O8  O  0 1 N N N N N N 0.729   43.336 -20.246 7.834   -0.841 2.080  O8  XVG 34 
XVG C22 C22 C  0 1 N N N N N N -3.197  38.130 -16.979 0.354   -2.111 -0.389 C22 XVG 35 
XVG C23 C23 C  0 1 N N N N N N -2.149  37.139 -16.557 0.613   -3.320 -1.207 C23 XVG 36 
XVG O9  O9  O  0 1 N N N N N N -1.855  36.259 -17.369 1.752   -3.636 -1.480 O9  XVG 37 
XVG O10 O10 O  0 1 N N N N N N -1.640  37.292 -15.459 -0.417  -4.069 -1.646 O10 XVG 38 
XVG N6  N6  N  0 1 N N N N N N -4.201  37.796 -17.720 -0.880  -1.739 0.074  N6  XVG 39 
XVG C24 C24 C  0 1 Y N N N N N -10.148 39.021 -14.191 -4.929  2.050  0.045  C24 XVG 40 
XVG N7  N7  N  0 1 Y N N N N N -10.718 39.576 -13.038 -3.681  2.344  0.415  N7  XVG 41 
XVG C25 C25 C  0 1 Y N N N N N -11.550 38.715 -12.490 -3.306  3.578  0.285  C25 XVG 42 
XVG N8  N8  N  0 1 N N N N N N -12.281 38.957 -11.385 -2.054  4.071  0.614  N8  XVG 43 
XVG S1  S1  S  0 1 Y N N N N N -11.607 37.162 -13.280 -4.631  4.530  -0.375 S1  XVG 44 
XVG C26 C26 C  0 1 Y N N N N N -10.567 37.734 -14.479 -5.646  3.091  -0.429 C26 XVG 45 
XVG CL1 CL1 CL 0 0 N N N N N N -10.220 36.733 -15.818 -7.286  3.023  -0.992 CL1 XVG 46 
XVG C27 C27 C  0 1 N N N N N N -7.990  43.809 -14.299 -8.874  -2.491 -0.865 C27 XVG 47 
XVG O11 O11 O  0 1 N N N N N N -9.106  43.903 -14.836 -8.127  -3.320 -0.403 O11 XVG 48 
XVG O12 O12 O  0 1 N N N N N N -7.521  44.613 -13.445 -10.075 -2.860 -1.340 O12 XVG 49 
XVG H1  H1  H  0 1 N N N N N N -5.541  43.952 -15.371 -9.459  -0.549 0.934  H1  XVG 50 
XVG H2  H2  H  0 1 N N N N N N -5.495  42.335 -16.151 -9.151  0.844  -0.131 H2  XVG 51 
XVG H3  H3  H  0 1 N N N N N N -6.733  43.537 -16.648 -10.448 -0.309 -0.526 H3  XVG 52 
XVG H4  H4  H  0 1 N N N N N N -6.999  41.698 -12.780 -8.147  0.488  -2.392 H4  XVG 53 
XVG H5  H5  H  0 1 N N N N N N -5.635  41.280 -13.871 -7.741  -1.157 -2.937 H5  XVG 54 
XVG H6  H6  H  0 1 N N N N N N -5.712  42.906 -13.114 -9.445  -0.664 -2.786 H6  XVG 55 
XVG H7  H7  H  0 1 N N N N N N -7.029  38.567 -15.444 -3.164  0.798  1.339  H7  XVG 56 
XVG H8  H8  H  0 1 N N N N N N -8.049  37.323 -17.890 -2.932  -2.100 1.619  H8  XVG 57 
XVG H9  H9  H  0 1 N Y N N N N -5.687  36.055 -17.620 -2.918  -1.952 4.218  H9  XVG 58 
XVG H10 H10 H  0 1 N N N N N N -6.933  39.525 -18.596 -1.169  0.121  2.745  H10 XVG 59 
XVG H11 H11 H  0 1 N N N N N N -6.386  38.005 -19.381 -0.758  -1.607 2.631  H11 XVG 60 
XVG H12 H12 H  0 1 N N N N N N -4.871  40.868 -17.324 0.709   0.811  0.330  H12 XVG 61 
XVG H13 H13 H  0 1 N N N N N N -5.185  39.607 -16.084 0.984   -0.139 1.824  H13 XVG 62 
XVG H15 H15 H  0 1 N N N N N N -0.848  39.820 -16.233 3.252   0.267  0.859  H15 XVG 63 
XVG H16 H16 H  0 1 N N N N N N -0.154  40.559 -19.012 5.412   -1.448 0.252  H16 XVG 64 
XVG H17 H17 H  0 1 N N N N N N 0.973   39.980 -17.738 5.171   -0.342 -1.122 H17 XVG 65 
XVG H18 H18 H  0 1 N N N N N N 0.649   42.155 -16.542 5.363   1.600  0.408  H18 XVG 66 
XVG H19 H19 H  0 1 N N N N N N -0.343  42.724 -17.927 5.604   0.494  1.782  H19 XVG 67 
XVG H20 H20 H  0 1 N N N N N N 5.892   42.306 -18.174 10.159  1.952  -2.208 H20 XVG 68 
XVG H21 H21 H  0 1 N N N N N N 7.685   42.945 -19.487 13.079  1.960  -1.536 H21 XVG 69 
XVG H22 H22 H  0 1 N N N N N N 6.717   44.273 -22.078 13.218  -1.371 -0.177 H22 XVG 70 
XVG H23 H23 H  0 1 N N N N N N 3.142   44.199 -21.858 10.831  -1.125 1.618  H23 XVG 71 
XVG H25 H25 H  0 1 N N N N N N -0.977  36.626 -15.321 -0.199  -4.848 -2.176 H25 XVG 72 
XVG H26 H26 H  0 1 N N N N N N -4.755  37.130 -17.220 -1.697  -2.235 -0.091 H26 XVG 73 
XVG H27 H27 H  0 1 N N N N N N -12.805 38.139 -11.146 -1.377  3.476  0.973  H27 XVG 74 
XVG H28 H28 H  0 1 N N N N N N -11.672 39.196 -10.629 -1.854  5.011  0.485  H28 XVG 75 
XVG H29 H29 H  0 1 N N N N N N -8.154  45.301 -13.276 -10.296 -3.800 -1.291 H29 XVG 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XVG O7  C18 SING N N 1  
XVG C18 C19 DOUB Y N 2  
XVG C18 C17 SING Y N 3  
XVG C19 C20 SING Y N 4  
XVG O8  C21 DOUB N N 5  
XVG O6  C17 SING N N 6  
XVG C17 C16 DOUB Y N 7  
XVG C20 C21 SING N N 8  
XVG C20 C15 DOUB Y N 9  
XVG C21 N5  SING N N 10 
XVG C16 C15 SING Y N 11 
XVG C15 C14 SING N N 12 
XVG O4  C11 DOUB N N 13 
XVG C8  N3  SING N N 14 
XVG C8  C6  SING N N 15 
XVG N5  C14 SING N N 16 
XVG N5  C13 SING N N 17 
XVG N3  N6  SING N N 18 
XVG N3  C9  SING N N 19 
XVG C12 C13 SING N N 20 
XVG C12 N4  SING N N 21 
XVG C14 O5  DOUB N N 22 
XVG N6  C22 SING N N 23 
XVG C11 N4  SING N N 24 
XVG C11 C10 SING N N 25 
XVG C6  C7  SING N N 26 
XVG C6  N2  SING N N 27 
XVG O9  C23 DOUB N N 28 
XVG O2  C5  DOUB N N 29 
XVG C9  C10 SING N N 30 
XVG C10 C22 DOUB N N 31 
XVG C22 C23 SING N N 32 
XVG C7  O3  DOUB N N 33 
XVG C23 O10 SING N N 34 
XVG C5  N2  SING N N 35 
XVG C5  C4  SING N N 36 
XVG CL1 C26 SING N N 37 
XVG C1  C2  SING N N 38 
XVG O1  C2  SING N N 39 
XVG O1  N1  SING N N 40 
XVG C4  N1  DOUB N Z 41 
XVG C4  C24 SING N N 42 
XVG O11 C27 DOUB N N 43 
XVG C2  C27 SING N N 44 
XVG C2  C3  SING N N 45 
XVG C26 C24 DOUB Y N 46 
XVG C26 S1  SING Y N 47 
XVG C27 O12 SING N N 48 
XVG C24 N7  SING Y N 49 
XVG S1  C25 SING Y N 50 
XVG N7  C25 DOUB Y N 51 
XVG C25 N8  SING N N 52 
XVG C1  H1  SING N N 53 
XVG C1  H2  SING N N 54 
XVG C1  H3  SING N N 55 
XVG C3  H4  SING N N 56 
XVG C3  H5  SING N N 57 
XVG C3  H6  SING N N 58 
XVG N2  H7  SING N N 59 
XVG C6  H8  SING N N 60 
XVG C7  H9  SING N N 61 
XVG C8  H10 SING N N 62 
XVG C8  H11 SING N N 63 
XVG C9  H12 SING N N 64 
XVG C9  H13 SING N N 65 
XVG N4  H15 SING N N 66 
XVG C12 H16 SING N N 67 
XVG C12 H17 SING N N 68 
XVG C13 H18 SING N N 69 
XVG C13 H19 SING N N 70 
XVG C16 H20 SING N N 71 
XVG O6  H21 SING N N 72 
XVG O7  H22 SING N N 73 
XVG C19 H23 SING N N 74 
XVG O10 H25 SING N N 75 
XVG N6  H26 SING N N 76 
XVG N8  H27 SING N N 77 
XVG N8  H28 SING N N 78 
XVG O12 H29 SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XVG SMILES           ACDLabs              12.01 "CC(C(O)=O)(C)O\N=C(\c1nc(N)sc1Cl)C(NC(C=O)CN2NC(=C(C2)C(NCCN4C(=O)c3cc(O)c(cc3C4=O)O)=O)C(O)=O)=O"                                                                                                                                                                                    
XVG InChI            InChI                1.03  "InChI=1S/C27H27ClN8O12S/c1-27(2,25(46)47)48-34-18(17-19(28)49-26(29)32-17)21(41)31-10(9-37)7-35-8-13(16(33-35)24(44)45)20(40)30-3-4-36-22(42)11-5-14(38)15(39)6-12(11)23(36)43/h5-6,9-10,33,38-39H,3-4,7-8H2,1-2H3,(H2,29,32)(H,30,40)(H,31,41)(H,44,45)(H,46,47)/b34-18-/t10-/m0/s1" 
XVG InChIKey         InChI                1.03  USNGVNQJWJJOSD-RUDQHFNBSA-N                                                                                                                                                                                                                                                            
XVG SMILES_CANONICAL CACTVS               3.385 "CC(C)(O\N=C(/C(=O)N[C@@H](CN1CC(=C(N1)C(O)=O)C(=O)NCCN2C(=O)c3cc(O)c(O)cc3C2=O)C=O)c4nc(N)sc4Cl)C(O)=O"                                                                                                                                                                               
XVG SMILES           CACTVS               3.385 "CC(C)(ON=C(C(=O)N[CH](CN1CC(=C(N1)C(O)=O)C(=O)NCCN2C(=O)c3cc(O)c(O)cc3C2=O)C=O)c4nc(N)sc4Cl)C(O)=O"                                                                                                                                                                                   
XVG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)O)O/N=C(/c1c(sc(n1)N)Cl)\C(=O)N[C@@H](CN2CC(=C(N2)C(=O)O)C(=O)NCCN3C(=O)c4cc(c(cc4C3=O)O)O)C=O"                                                                                                                                                                            
XVG SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)O)ON=C(c1c(sc(n1)N)Cl)C(=O)NC(CN2CC(=C(N2)C(=O)O)C(=O)NCCN3C(=O)c4cc(c(cc4C3=O)O)O)C=O"                                                                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XVG "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(2S)-2-{[(2Z)-2-(2-amino-5-chloro-1,3-thiazol-4-yl)-2-{[(2-carboxypropan-2-yl)oxy]imino}acetyl]amino}-3-oxopropyl]-4-{[2-(5,6-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)ethyl]carbamoyl}-2,5-dihydro-1H-pyrazole-3-carboxylic acid"                                           
XVG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(2~{S})-2-[[(2~{Z})-2-(2-azanyl-5-chloranyl-1,3-thiazol-4-yl)-2-(2-methyl-1-oxidanyl-1-oxidanylidene-propan-2-yl)oxyimino-ethanoyl]amino]-3-oxidanylidene-propyl]-4-[2-[5,6-bis(oxidanyl)-1,3-bis(oxidanylidene)isoindol-2-yl]ethylcarbamoyl]-1,3-dihydropyrazole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XVG "Create component" 2021-01-15 RCSB 
XVG "Initial release"  2021-04-28 RCSB 
XVG "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XVG 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
