data_AFH
#

_chem_comp.id                                   AFH
_chem_comp.name                                 "ADENOSINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO HEPTOSE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H26 F N5 O15 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2S,3R,4S,5S,6R)-6-[(1S)-1,2-DIHYDROXYETHYL]-3-FLUORO-4,5-DIHYDROXYTETRAHYDRO-2H-PYRAN-2-YL DIHYDROGEN DIPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-07-24
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       621.359
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AFH
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AFH  N9      N9      N  0  1  Y  N  N  47.797  11.774   5.569   6.100   0.394   0.098  N9      AFH   1  
AFH  C8      C8      C  0  1  Y  N  N  48.721  10.976   4.961   5.578   1.301   0.970  C8      AFH   2  
AFH  N7      N7      N  0  1  Y  N  N  49.790  10.855   5.727   6.487   2.171   1.304  N7      AFH   3  
AFH  C5      C5      C  0  1  Y  N  N  49.598  11.549   6.830   7.648   1.875   0.673  C5      AFH   4  
AFH  C6      C6      C  0  1  Y  N  N  50.342  11.831   8.027   8.930   2.449   0.641  C6      AFH   5  
AFH  N6      N6      N  0  1  N  N  N  51.557  11.296   8.156   9.220   3.577   1.389  N6      AFH   6  
AFH  N1      N1      N  0  1  Y  N  N  49.801  12.654   9.052   9.860   1.881  -0.120  N1      AFH   7  
AFH  C2      C2      C  0  1  Y  N  N  48.545  13.219   8.938   9.593   0.805  -0.838  C2      AFH   8  
AFH  N3      N3      N  0  1  Y  N  N  47.821  12.957   7.783   8.405   0.236  -0.844  N3      AFH   9  
AFH  C4      C4      C  0  1  Y  N  N  48.289  12.156   6.733   7.413   0.734  -0.113  C4      AFH  10  
AFH  C1D     C1*     C  0  1  N  N  R  46.434  12.187   5.059   5.391  -0.738  -0.504  C1D     AFH  11  
AFH  C2D     C2*     C  0  1  N  N  R  46.513  12.858   3.686   5.598  -2.014   0.341  C2D     AFH  12  
AFH  "O2'"   O2*     O  0  1  N  N  N  46.987  14.205   3.685   6.628  -2.831  -0.219  "O2'"   AFH  13  
AFH  C3D     C3*     C  0  1  N  N  S  45.121  12.662   3.148   4.233  -2.737   0.268  C3D     AFH  14  
AFH  C4D     C4*     C  0  1  N  N  R  44.755  11.349   3.708   3.365  -1.813  -0.615  C4D     AFH  15  
AFH  O4D     O4*     O  0  1  N  N  N  45.568  11.081   4.867   3.965  -0.506  -0.483  O4D     AFH  16  
AFH  O3D     O3*     O  0  1  N  N  N  44.180  13.653   3.596   4.377  -4.021  -0.342  O3D     AFH  17  
AFH  C5D     C5*     C  0  1  N  N  N  44.891  10.349   2.571   1.922  -1.790  -0.109  C5D     AFH  18  
AFH  O5D     O5*     O  0  1  N  N  N  43.707  10.448   1.697   1.129  -0.965  -0.966  O5D     AFH  19  
AFH  PA      PA      P  0  1  N  N  S  42.592   9.373   1.484  -0.369  -0.987  -0.377  PA      AFH  20  
AFH  O1A     O1A     O  0  1  N  N  N  41.925   9.591   0.259  -0.347  -0.571   1.043  O1A     AFH  21  
AFH  O2A     O2A     O  0  1  N  N  N  41.583   9.363   2.545  -0.969  -2.476  -0.491  O2A     AFH  22  
AFH  O3A     O3A     O  0  1  N  N  N  43.421   8.102   1.309  -1.291   0.029  -1.220  O3A     AFH  23  
AFH  PB      PB      P  0  1  N  N  S  43.177   6.634   1.242  -2.569   0.368  -0.301  PB      AFH  24  
AFH  O1B     O1B     O  0  1  N  N  N  43.747   6.041  -0.011  -3.018  -0.859   0.393  O1B     AFH  25  
AFH  O2B     O2B     O  0  1  N  N  N  43.814   6.076   2.399  -2.166   1.484   0.788  O2B     AFH  26  
AFH  O3B     O3B     O  0  1  N  N  N  41.571   6.529   1.425  -3.762   0.928  -1.226  O3B     AFH  27  
AFH  "C1'"   "C1'"   C  0  1  N  N  S  40.951   5.508   0.964  -4.898   1.098  -0.377  "C1'"   AFH  28  
AFH  "C2'"   "C2'"   C  0  1  N  N  R  40.003   4.861   1.984  -5.761   2.247  -0.905  "C2'"   AFH  29  
AFH  "C3'"   "C3'"   C  0  1  N  N  S  39.308   3.655   1.298  -6.958   2.444   0.032  "C3'"   AFH  30  
AFH  "C4'"   "C4'"   C  0  1  N  N  S  38.518   4.221   0.097  -7.683   1.102   0.188  "C4'"   AFH  31  
AFH  "C5'"   "C5'"   C  0  1  N  N  R  39.479   4.900  -0.918  -6.676   0.039   0.632  "C5'"   AFH  32  
AFH  "C6'"   "C6'"   C  0  1  N  N  S  38.782   5.532  -2.171  -7.398  -1.296   0.822  "C6'"   AFH  33  
AFH  "C7'"   "C7'"   C  0  1  N  N  N  39.725   6.201  -3.211  -6.376  -2.386   1.153  "C7'"   AFH  34  
AFH  F       F       F  0  1  N  N  N  40.740   4.432   3.110  -5.002   3.421  -0.948  F       AFH  35  
AFH  "O3'"   "O3'"   O  0  1  N  N  N  38.424   3.020   2.218  -7.852   3.410  -0.524  "O3'"   AFH  36  
AFH  "O4'"   "O4'"   O  0  1  N  N  N  37.837   3.197  -0.605  -8.714   1.225   1.170  "O4'"   AFH  37  
AFH  "O5'"   "O5'"   O  0  1  N  N  N  40.256   5.976  -0.239  -5.660  -0.108  -0.358  "O5'"   AFH  38  
AFH  "O6'"   "O6'"   O  0  1  N  N  N  37.826   6.498  -1.719  -8.089  -1.639  -0.381  "O6'"   AFH  39  
AFH  "O7'"   "O7'"   O  0  1  N  N  N  41.123   6.168  -2.921  -7.060  -3.607   1.444  "O7'"   AFH  40  
AFH  H8      H8      H  0  1  N  N  N  48.597  10.511   3.994   4.560   1.299   1.331  H8      AFH  41  
AFH  HN61    1HN6    H  0  0  N  N  N  52.007  10.706   7.485  10.110   3.961   1.362  HN61    AFH  42  
AFH  HN62    2HN6    H  0  0  N  N  N  51.945  11.581   9.033   8.532   3.984   1.938  HN62    AFH  43  
AFH  H2      H2      H  0  1  N  N  N  48.140  13.843   9.721  10.378   0.375  -1.442  H2      AFH  44  
AFH  H1D     H1*     H  0  1  N  N  N  46.054  12.871   5.833   5.734  -0.900  -1.526  H1D     AFH  45  
AFH  H2D     H2*     H  0  1  N  N  N  47.284  12.410   3.041   5.838  -1.753   1.372  H2D     AFH  46  
AFH  "HO2'"  HO2*    H  0  0  N  N  N  47.092  14.505   4.580   6.668  -3.636   0.315  "HO2'"  AFH  47  
AFH  H3D     H3*     H  0  1  N  N  N  45.098  12.737   2.051   3.797  -2.834   1.262  H3D     AFH  48  
AFH  H4D     H4*     H  0  1  N  N  N  43.721  11.295   4.079   3.397  -2.142  -1.654  H4D     AFH  49  
AFH  HO3A    HO3*    H  0  0  N  N  N  43.973  13.503   4.511   4.926  -4.552   0.252  HO3A    AFH  50  
AFH  "H5'1"  1H5*    H  0  0  N  N  N  44.965   9.331   2.980   1.521  -2.804  -0.108  "H5'1"  AFH  51  
AFH  "H5'2"  2H5*    H  0  0  N  N  N  45.798  10.572   1.990   1.898  -1.389   0.904  "H5'2"  AFH  52  
AFH  HO2A    HO2A    H  0  0  N  N  N  42.013   9.361   3.392  -0.966  -2.708  -1.430  HO2A    AFH  53  
AFH  HO2B    HO2B    H  0  0  N  N  N  44.739   5.953   2.223  -1.880   2.265   0.295  HO2B    AFH  54  
AFH  "H1'"   "H1'"   H  0  1  N  N  N  41.658   4.699   0.727  -4.564   1.331   0.634  "H1'"   AFH  55  
AFH  "H2'"   "H2'"   H  0  1  N  N  N  39.246   5.583   2.323  -6.118   2.006  -1.907  "H2'"   AFH  56  
AFH  "H3'"   "H3'"   H  0  1  N  N  N  40.042   2.906   0.965  -6.609   2.786   1.006  "H3'"   AFH  57  
AFH  "H4'"   "H4'"   H  0  1  N  N  N  37.799   4.944   0.509  -8.122   0.812  -0.767  "H4'"   AFH  58  
AFH  "H5'"   "H5'"   H  0  1  N  N  N  40.121   4.085  -1.284  -6.222   0.343   1.575  "H5'"   AFH  59  
AFH  "H6'"   "H6'"   H  0  1  N  N  N  38.321   4.690  -2.707  -8.114  -1.209   1.640  "H6'"   AFH  60  
AFH  "H7'1"  "1H7'"  H  0  0  N  N  N  39.450   7.266  -3.215  -5.715  -2.535   0.299  "H7'1"  AFH  61  
AFH  "H7'2"  "2H7'"  H  0  0  N  N  N  39.579   5.676  -4.166  -5.789  -2.082   2.019  "H7'2"  AFH  62  
AFH  "HO3'"  "HO3'"  H  0  0  N  N  N  38.873   2.879   3.043  -7.355   4.236  -0.604  "HO3'"  AFH  63  
AFH  "HO4'"  "HO4'"  H  0  0  N  N  N  37.684   3.474  -1.501  -9.325   1.903   0.851  "HO4'"  AFH  64  
AFH  "HO6'"  "HO6'"  H  0  0  N  N  N  37.614   6.332  -0.808  -7.421  -1.706  -1.077  "HO6'"  AFH  65  
AFH  "HO7'"  "HO7'"  H  0  0  N  N  N  41.615   6.161  -3.733  -6.381  -4.265   1.646  "HO7'"  AFH  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AFH  N9     C8      SING  Y  N   1  
AFH  N9     C4      SING  Y  N   2  
AFH  N9     C1D     SING  N  N   3  
AFH  C8     N7      DOUB  Y  N   4  
AFH  C8     H8      SING  N  N   5  
AFH  N7     C5      SING  Y  N   6  
AFH  C5     C6      SING  Y  N   7  
AFH  C5     C4      DOUB  Y  N   8  
AFH  C6     N6      SING  N  N   9  
AFH  C6     N1      DOUB  Y  N  10  
AFH  N6     HN61    SING  N  N  11  
AFH  N6     HN62    SING  N  N  12  
AFH  N1     C2      SING  Y  N  13  
AFH  C2     N3      DOUB  Y  N  14  
AFH  C2     H2      SING  N  N  15  
AFH  N3     C4      SING  Y  N  16  
AFH  C1D    C2D     SING  N  N  17  
AFH  C1D    O4D     SING  N  N  18  
AFH  C1D    H1D     SING  N  N  19  
AFH  C2D    "O2'"   SING  N  N  20  
AFH  C2D    C3D     SING  N  N  21  
AFH  C2D    H2D     SING  N  N  22  
AFH  "O2'"  "HO2'"  SING  N  N  23  
AFH  C3D    C4D     SING  N  N  24  
AFH  C3D    O3D     SING  N  N  25  
AFH  C3D    H3D     SING  N  N  26  
AFH  C4D    O4D     SING  N  N  27  
AFH  C4D    C5D     SING  N  N  28  
AFH  C4D    H4D     SING  N  N  29  
AFH  O3D    HO3A    SING  N  N  30  
AFH  C5D    O5D     SING  N  N  31  
AFH  C5D    "H5'1"  SING  N  N  32  
AFH  C5D    "H5'2"  SING  N  N  33  
AFH  O5D    PA      SING  N  N  34  
AFH  PA     O1A     DOUB  N  N  35  
AFH  PA     O2A     SING  N  N  36  
AFH  PA     O3A     SING  N  N  37  
AFH  O2A    HO2A    SING  N  N  38  
AFH  O3A    PB      SING  N  N  39  
AFH  PB     O1B     DOUB  N  N  40  
AFH  PB     O2B     SING  N  N  41  
AFH  PB     O3B     SING  N  N  42  
AFH  O2B    HO2B    SING  N  N  43  
AFH  O3B    "C1'"   SING  N  N  44  
AFH  "C1'"  "C2'"   SING  N  N  45  
AFH  "C1'"  "O5'"   SING  N  N  46  
AFH  "C1'"  "H1'"   SING  N  N  47  
AFH  "C2'"  "C3'"   SING  N  N  48  
AFH  "C2'"  F       SING  N  N  49  
AFH  "C2'"  "H2'"   SING  N  N  50  
AFH  "C3'"  "C4'"   SING  N  N  51  
AFH  "C3'"  "O3'"   SING  N  N  52  
AFH  "C3'"  "H3'"   SING  N  N  53  
AFH  "C4'"  "C5'"   SING  N  N  54  
AFH  "C4'"  "O4'"   SING  N  N  55  
AFH  "C4'"  "H4'"   SING  N  N  56  
AFH  "C5'"  "C6'"   SING  N  N  57  
AFH  "C5'"  "O5'"   SING  N  N  58  
AFH  "C5'"  "H5'"   SING  N  N  59  
AFH  "C6'"  "C7'"   SING  N  N  60  
AFH  "C6'"  "O6'"   SING  N  N  61  
AFH  "C6'"  "H6'"   SING  N  N  62  
AFH  "C7'"  "O7'"   SING  N  N  63  
AFH  "C7'"  "H7'1"  SING  N  N  64  
AFH  "C7'"  "H7'2"  SING  N  N  65  
AFH  "O3'"  "HO3'"  SING  N  N  66  
AFH  "O4'"  "HO4'"  SING  N  N  67  
AFH  "O6'"  "HO6'"  SING  N  N  68  
AFH  "O7'"  "HO7'"  SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AFH  SMILES            ACDLabs               10.04  "O=P(OC1OC(C(O)C(O)C1F)C(O)CO)(O)OP(=O)(O)OCC4OC(n2c3ncnc(N)c3nc2)C(O)C4O"  
AFH  SMILES_CANONICAL  CACTVS                3.341  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)O[C@@H]4O[C@H]([C@@H](O)CO)[C@@H](O)[C@H](O)[C@H]4F)[C@@H](O)[C@H]3O"  
AFH  SMILES            CACTVS                3.341  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]4O[CH]([CH](O)CO)[CH](O)[CH](O)[CH]4F)[CH](O)[CH]3O"  
AFH  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)[C@H](CO)O)O)O)F)O)O)N"  
AFH  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OC4C(C(C(C(O4)C(CO)O)O)O)F)O)O)N"  
AFH  InChI             InChI                 1.03   "InChI=1S/C17H26FN5O15P2/c18-7-10(27)11(28)13(5(25)1-24)36-17(7)37-40(32,33)38-39(30,31)34-2-6-9(26)12(29)16(35-6)23-4-22-8-14(19)20-3-21-15(8)23/h3-7,9-13,16-17,24-29H,1-2H2,(H,30,31)(H,32,33)(H2,19,20,21)/t5-,6+,7+,9+,10+,11-,12+,13+,16+,17-/m0/s1"  
AFH  InChIKey          InChI                 1.03   SUPCMUQXGKOKIM-FJBXLJLUSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AFH  "SYSTEMATIC NAME"  ACDLabs               10.04  "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2S,3R,4S,5S,6R)-6-[(1S)-1,2-dihydroxyethyl]-3-fluoro-4,5-dihydroxytetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)"  
AFH  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2S,3R,4S,5S,6R)-6-[(1S)-1,2-dihydroxyethyl]-3-fluoro-4,5-dihydroxy-oxan-2-yl]oxy-hydroxy-phosphoryl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AFH  "Create component"   2006-07-24  RCSB  
AFH  "Modify descriptor"  2011-06-04  RCSB  
AFH  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     AFH
_pdbx_chem_comp_synonyms.name        "[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2S,3R,4S,5S,6R)-6-[(1S)-1,2-DIHYDROXYETHYL]-3-FLUORO-4,5-DIHYDROXYTETRAHYDRO-2H-PYRAN-2-YL DIHYDROGEN DIPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
