data_DIH
# 
_chem_comp.id                                    DIH 
_chem_comp.name                                  "7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2002-11-05 
_chem_comp.pdbx_modified_date                    2018-12-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        265.288 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DIH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1N3I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DIH "O5'" O1  O 0 1 N N N 54.786 13.576 44.032 5.910  -0.297 -0.590 "O5'" DIH 1  
DIH "C5'" C1  C 0 1 N N N 54.963 14.914 44.471 4.970  -0.677 0.417  "C5'" DIH 2  
DIH "C4'" C2  C 0 1 N N R 56.246 15.618 44.734 3.554  -0.614 -0.159 "C4'" DIH 3  
DIH "C6'" C3  C 0 1 N N N 57.046 15.634 43.503 2.509  -1.020 0.911  "C6'" DIH 4  
DIH "C3'" C4  C 0 1 N N R 56.071 17.032 45.172 3.161  0.844  -0.489 "C3'" DIH 5  
DIH "O3'" O2  O 0 1 N N N 56.905 17.466 46.228 3.299  1.089  -1.890 "O3'" DIH 6  
DIH "C2'" C5  C 0 1 N N N 56.212 17.632 43.827 1.685  0.969  -0.067 "C2'" DIH 7  
DIH "N1'" N1  N 1 1 N N N 57.355 17.020 43.210 1.266  -0.355 0.442  "N1'" DIH 8  
DIH C10   C6  C 0 1 N N N 57.511 17.229 41.789 0.326  -0.194 1.559  C10   DIH 9  
DIH C9    C7  C 0 1 Y N N 56.642 16.797 40.666 -0.974 0.369  1.044  C9    DIH 10 
DIH C8    C8  C 0 1 Y N N 56.744 15.687 39.837 -1.363 1.659  1.112  C8    DIH 11 
DIH N7    N2  N 0 1 Y N N 55.807 15.580 38.925 -2.593 1.791  0.545  N7    DIH 12 
DIH C5    C9  C 0 1 Y N N 54.998 16.689 39.129 -3.011 0.559  0.100  C5    DIH 13 
DIH C6    C10 C 0 1 N N N 53.786 17.131 38.430 -4.170 0.090  -0.552 C6    DIH 14 
DIH O6    O3  O 0 1 N N N 53.238 16.570 37.484 -5.077 0.854  -0.838 O6    DIH 15 
DIH N1    N3  N 0 1 N N N 53.217 18.351 38.936 -4.252 -1.224 -0.852 N1    DIH 16 
DIH C2    C11 C 0 1 N N N 53.753 19.104 40.030 -3.240 -2.071 -0.531 C2    DIH 17 
DIH N3    N4  N 0 1 N N N 54.902 18.686 40.695 -2.160 -1.662 0.071  N3    DIH 18 
DIH C4    C12 C 0 1 Y N N 55.490 17.466 40.207 -1.997 -0.358 0.400  C4    DIH 19 
DIH H1    H1  H 0 1 N N N 53.858 13.390 43.947 6.831  -0.313 -0.294 H1    DIH 20 
DIH H2    H2  H 0 1 N N N 54.456 15.528 43.712 5.183  -1.693 0.748  H2    DIH 21 
DIH H3    H3  H 0 1 N N N 54.410 14.974 45.420 5.049  0.006  1.263  H3    DIH 22 
DIH H4    H4  H 0 1 N N N 56.797 15.072 45.514 3.470  -1.246 -1.043 H4    DIH 23 
DIH H5    H5  H 0 1 N N N 56.472 15.193 42.675 2.381  -2.103 0.933  H5    DIH 24 
DIH H6    H6  H 0 1 N N N 57.975 15.064 43.650 2.800  -0.649 1.894  H6    DIH 25 
DIH H7    H7  H 0 1 N N N 55.023 17.154 45.483 3.779  1.540  0.078  H7    DIH 26 
DIH H8    H8  H 0 1 N N N 56.690 16.986 47.019 3.066  1.989  -2.157 H8    DIH 27 
DIH H9    H9  H 0 1 N N N 56.365 18.718 43.912 1.586  1.717  0.719  H9    DIH 28 
DIH H10   H10 H 0 1 N N N 55.310 17.435 43.229 1.076  1.249  -0.926 H10   DIH 29 
DIH H11   H11 H 0 1 N N N 58.190 17.291 43.689 0.841  -0.894 -0.297 H11   DIH 30 
DIH H12   H12 H 0 1 N N N 58.491 16.787 41.557 0.144  -1.163 2.024  H12   DIH 31 
DIH H13   H13 H 0 1 N N N 57.567 18.322 41.682 0.751  0.488  2.296  H13   DIH 32 
DIH H14   H14 H 0 1 N N N 57.539 14.963 39.936 -0.788 2.462  1.549  H14   DIH 33 
DIH H15   H15 H 0 1 N N N 55.700 14.861 38.238 -3.095 2.618  0.471  H15   DIH 34 
DIH H16   H16 H 0 1 N N N 52.390 18.698 38.493 -5.041 -1.567 -1.300 H16   DIH 35 
DIH H17   H17 H 0 1 N N N 53.258 20.011 40.344 -3.333 -3.117 -0.783 H17   DIH 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DIH O6    C6    DOUB N N 1  
DIH C6    N1    SING N N 2  
DIH C6    C5    SING N N 3  
DIH N7    C5    SING Y N 4  
DIH N7    C8    SING Y N 5  
DIH N1    C2    SING N N 6  
DIH C5    C4    DOUB Y N 7  
DIH C8    C9    DOUB Y N 8  
DIH C2    N3    DOUB N N 9  
DIH C4    C9    SING Y N 10 
DIH C4    N3    SING N N 11 
DIH C9    C10   SING N N 12 
DIH C10   "N1'" SING N N 13 
DIH "N1'" "C6'" SING N N 14 
DIH "N1'" "C2'" SING N N 15 
DIH "C6'" "C4'" SING N N 16 
DIH "C2'" "C3'" SING N N 17 
DIH "O5'" "C5'" SING N N 18 
DIH "C5'" "C4'" SING N N 19 
DIH "C4'" "C3'" SING N N 20 
DIH "C3'" "O3'" SING N N 21 
DIH "O5'" H1    SING N N 22 
DIH "C5'" H2    SING N N 23 
DIH "C5'" H3    SING N N 24 
DIH "C4'" H4    SING N N 25 
DIH "C6'" H5    SING N N 26 
DIH "C6'" H6    SING N N 27 
DIH "C3'" H7    SING N N 28 
DIH "O3'" H8    SING N N 29 
DIH "C2'" H9    SING N N 30 
DIH "C2'" H10   SING N N 31 
DIH "N1'" H11   SING N N 32 
DIH C10   H12   SING N N 33 
DIH C10   H13   SING N N 34 
DIH C8    H14   SING N N 35 
DIH N7    H15   SING N N 36 
DIH N1    H16   SING N N 37 
DIH C2    H17   SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DIH InChI            InChI                1.03  "InChI=1S/C12H16N4O3/c17-5-8-3-16(4-9(8)18)2-7-1-13-11-10(7)14-6-15-12(11)19/h1,6,8-9,13,17-18H,2-5H2,(H,14,15,19)/p+1/t8-,9+/m1/s1" 
DIH InChIKey         InChI                1.03  AFNHHLILYQEHKK-BDAKNGLRSA-O                                                                                                          
DIH SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1C[NH+](C[C@@H]1O)Cc2c[nH]c3C(=O)NC=Nc23"                                                                                    
DIH SMILES           CACTVS               3.385 "OC[CH]1C[NH+](C[CH]1O)Cc2c[nH]c3C(=O)NC=Nc23"                                                                                       
DIH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1c(c2c([nH]1)C(=O)NC=N2)C[NH+]3C[C@@H]([C@H](C3)O)CO"                                                                              
DIH SMILES           "OpenEye OEToolkits" 2.0.6 "c1c(c2c([nH]1)C(=O)NC=N2)C[NH+]3CC(C(C3)O)CO"                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DIH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "7-[[(3~{R},4~{R})-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DIH "Create component"    2002-11-05 RCSB 
DIH "Modify descriptor"   2011-06-04 RCSB 
DIH "Modify linking type" 2018-12-05 PDBJ 
# 
