data_VBH
#

_chem_comp.id                                   VBH
_chem_comp.name                                 "N-(2,2-diphenylethyl)-1,5-dimethyl-N-[2-(methylamino)-2-oxidanylidene-ethyl]-6-oxidanylidene-pyridine-3-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H27 N3 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-(2,2-diphenylethyl)-1,5-dimethyl-N-(2-(methylamino)-2-oxoethyl)-6-oxo-1,6-dihydropyridine-3-carboxamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-04
_chem_comp.pdbx_modified_date                   2021-07-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       417.500
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VBH
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OER
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VBH  N1   N1   N  0  1  N  N  N  39.767  19.671   8.357   0.060  -0.700   0.022  N1   VBH   1  
VBH  C4   C1   C  0  1  N  N  N  40.612  19.084  10.646   2.372  -0.152  -0.561  C4   VBH   2  
VBH  C5   C2   C  0  1  Y  N  N  40.197  18.367  11.927   3.809  -0.531  -0.312  C5   VBH   3  
VBH  C6   C3   C  0  1  Y  N  N  40.608  18.861  13.156   4.271  -0.675   0.983  C6   VBH   4  
VBH  C7   C4   C  0  1  Y  N  N  40.280  18.201  14.330   5.590  -1.023   1.211  C7   VBH   5  
VBH  C8   C5   C  0  1  Y  N  N  39.534  17.042  14.289   6.445  -1.227   0.144  C8   VBH   6  
VBH  C10  C6   C  0  1  Y  N  N  39.441  17.201  11.901   4.663  -0.742  -1.379  C10  VBH   7  
VBH  C13  C7   C  0  1  Y  N  N  43.829  17.192   9.872   2.404   3.171   1.230  C13  VBH   8  
VBH  C15  C8   C  0  1  Y  N  N  44.281  19.526   9.721   1.438   3.487  -0.938  C15  VBH   9  
VBH  C17  C9   C  0  1  N  N  N  40.175  19.352   7.113  -0.590   0.299   0.651  C17  VBH  10  
VBH  C20  C10  C  0  1  N  N  N  42.691  16.572   6.538  -3.776   1.720  -0.703  C20  VBH  11  
VBH  C21  C11  C  0  1  N  N  N  44.162  16.322   6.453  -4.255   2.799  -1.641  C21  VBH  12  
VBH  C22  C12  C  0  1  N  N  N  41.802  15.476   6.228  -4.704   0.889  -0.048  C22  VBH  13  
VBH  C24  C13  C  0  1  N  N  N  39.947  17.001   6.587  -2.970  -0.277   1.014  C24  VBH  14  
VBH  O2   O1   O  0  1  N  N  N  42.184  14.342   5.956  -5.898   1.046  -0.237  O2   VBH  15  
VBH  C19  C14  C  0  1  N  N  N  42.183  17.765   6.858  -2.446   1.540  -0.488  C19  VBH  16  
VBH  N2   N2   N  0  1  N  N  N  40.429  15.759   6.266  -4.282  -0.079   0.786  N2   VBH  17  
VBH  C23  C15  C  0  1  N  N  N  39.511  14.670   5.928  -5.267  -0.932   1.457  C23  VBH  18  
VBH  C18  C16  C  0  1  N  N  N  40.792  18.027   6.881  -2.026   0.519   0.398  C18  VBH  19  
VBH  O1   O2   O  0  1  N  N  N  40.028  20.109   6.159   0.007   1.019   1.428  O1   VBH  20  
VBH  C2   C17  C  0  1  N  N  N  39.191  20.985   8.569  -0.632  -1.500  -0.992  C2   VBH  21  
VBH  C1   C18  C  0  1  N  N  N  37.786  21.114   8.010  -1.175  -2.754  -0.357  C1   VBH  22  
VBH  O    O3   O  0  1  N  N  N  37.185  20.121   7.607  -1.002  -2.959   0.826  O    VBH  23  
VBH  N    N3   N  0  1  N  N  N  37.254  22.330   7.989  -1.854  -3.648  -1.103  N    VBH  24  
VBH  C    C19  C  0  1  N  N  N  35.846  22.565   7.724  -2.382  -4.866  -0.486  C    VBH  25  
VBH  C3   C20  C  0  1  N  N  N  39.664  18.739   9.488   1.461  -0.981   0.347  C3   VBH  26  
VBH  C11  C21  C  0  1  Y  N  N  42.063  18.778  10.291   2.180   1.312  -0.263  C11  VBH  27  
VBH  C16  C22  C  0  1  Y  N  N  42.965  19.804  10.051   1.614   2.143  -1.212  C16  VBH  28  
VBH  C14  C23  C  0  1  Y  N  N  44.713  18.222   9.629   1.834   4.001   0.282  C14  VBH  29  
VBH  C12  C24  C  0  1  Y  N  N  42.512  17.466  10.201   2.579   1.828   0.956  C12  VBH  30  
VBH  C9   C25  C  0  1  Y  N  N  39.114  16.545  13.075   5.982  -1.084  -1.150  C9   VBH  31  
VBH  H1   H1   H  0  1  N  N  N  40.533  20.166  10.828   2.120  -0.347  -1.604  H1   VBH  32  
VBH  H2   H2   H  0  1  N  N  N  41.190  19.770  13.199   3.603  -0.514   1.816  H2   VBH  33  
VBH  H3   H3   H  0  1  N  N  N  40.610  18.596  15.280   5.951  -1.134   2.222  H3   VBH  34  
VBH  H4   H4   H  0  1  N  N  N  39.280  16.527  15.204   7.475  -1.498   0.323  H4   VBH  35  
VBH  H5   H5   H  0  1  N  N  N  39.105  16.803  10.955   4.300  -0.634  -2.390  H5   VBH  36  
VBH  H6   H6   H  0  1  N  N  N  44.165  16.168   9.805   2.716   3.574   2.182  H6   VBH  37  
VBH  H7   H7   H  0  1  N  N  N  44.971  20.336   9.535   0.996   4.135  -1.680  H7   VBH  38  
VBH  H8   H8   H  0  1  N  N  N  44.706  17.241   6.715  -4.334   2.395  -2.650  H8   VBH  39  
VBH  H9   H9   H  0  1  N  N  N  44.439  15.520   7.153  -5.231   3.157  -1.315  H9   VBH  40  
VBH  H10  H10  H  0  1  N  N  N  44.424  16.020   5.428  -3.545   3.626  -1.636  H10  VBH  41  
VBH  H11  H11  H  0  1  N  N  N  38.880  17.168   6.607  -2.655  -1.057   1.691  H11  VBH  42  
VBH  H12  H12  H  0  1  N  N  N  42.863  18.565   7.110  -1.720   2.166  -0.987  H12  VBH  43  
VBH  H13  H13  H  0  1  N  N  N  38.474  15.029   5.998  -6.271  -0.632   1.158  H13  VBH  44  
VBH  H14  H14  H  0  1  N  N  N  39.712  14.327   4.902  -5.099  -1.972   1.176  H14  VBH  45  
VBH  H15  H15  H  0  1  N  N  N  39.658  13.836   6.629  -5.163  -0.826   2.537  H15  VBH  46  
VBH  H16  H16  H  0  1  N  N  N  39.833  21.732   8.080  -1.453  -0.921  -1.413  H16  VBH  47  
VBH  H17  H17  H  0  1  N  N  N  39.157  21.183   9.651   0.068  -1.767  -1.783  H17  VBH  48  
VBH  H18  H18  H  0  1  N  N  N  37.847  23.116   8.163  -1.993  -3.483  -2.049  H18  VBH  49  
VBH  H19  H19  H  0  1  N  N  N  35.641  23.645   7.759  -2.897  -5.462  -1.240  H19  VBH  50  
VBH  H20  H20  H  0  1  N  N  N  35.591  22.175   6.728  -1.561  -5.446  -0.064  H20  VBH  51  
VBH  H21  H21  H  0  1  N  N  N  35.239  22.052   8.485  -3.082  -4.599   0.306  H21  VBH  52  
VBH  H22  H22  H  0  1  N  N  N  38.631  18.759   9.865   1.651  -0.721   1.388  H22  VBH  53  
VBH  H23  H23  H  0  1  N  N  N  39.904  17.727   9.130   1.663  -2.041   0.194  H23  VBH  54  
VBH  H24  H24  H  0  1  N  N  N  42.638  20.831  10.122   1.310   1.742  -2.168  H24  VBH  55  
VBH  H25  H25  H  0  1  N  N  N  45.739  18.007   9.368   1.696   5.050   0.496  H25  VBH  56  
VBH  H26  H26  H  0  1  N  N  N  41.827  16.652  10.389   3.029   1.181   1.695  H26  VBH  57  
VBH  H27  H27  H  0  1  N  N  N  38.527  15.639  13.039   6.650  -1.248  -1.984  H27  VBH  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VBH  C23  N2   SING  N  N   1  
VBH  O2   C22  DOUB  N  N   2  
VBH  O1   C17  DOUB  N  N   3  
VBH  C22  N2   SING  N  N   4  
VBH  C22  C20  SING  N  N   5  
VBH  N2   C24  SING  N  N   6  
VBH  C21  C20  SING  N  N   7  
VBH  C20  C19  DOUB  N  N   8  
VBH  C24  C18  DOUB  N  N   9  
VBH  C19  C18  SING  N  N  10  
VBH  C18  C17  SING  N  N  11  
VBH  C17  N1   SING  N  N  12  
VBH  O    C1   DOUB  N  N  13  
VBH  C    N    SING  N  N  14  
VBH  N    C1   SING  N  N  15  
VBH  C1   C2   SING  N  N  16  
VBH  N1   C2   SING  N  N  17  
VBH  N1   C3   SING  N  N  18  
VBH  C3   C4   SING  N  N  19  
VBH  C14  C15  DOUB  Y  N  20  
VBH  C14  C13  SING  Y  N  21  
VBH  C15  C16  SING  Y  N  22  
VBH  C13  C12  DOUB  Y  N  23  
VBH  C16  C11  DOUB  Y  N  24  
VBH  C12  C11  SING  Y  N  25  
VBH  C11  C4   SING  N  N  26  
VBH  C4   C5   SING  N  N  27  
VBH  C10  C5   DOUB  Y  N  28  
VBH  C10  C9   SING  Y  N  29  
VBH  C5   C6   SING  Y  N  30  
VBH  C9   C8   DOUB  Y  N  31  
VBH  C6   C7   DOUB  Y  N  32  
VBH  C8   C7   SING  Y  N  33  
VBH  C4   H1   SING  N  N  34  
VBH  C6   H2   SING  N  N  35  
VBH  C7   H3   SING  N  N  36  
VBH  C8   H4   SING  N  N  37  
VBH  C10  H5   SING  N  N  38  
VBH  C13  H6   SING  N  N  39  
VBH  C15  H7   SING  N  N  40  
VBH  C21  H8   SING  N  N  41  
VBH  C21  H9   SING  N  N  42  
VBH  C21  H10  SING  N  N  43  
VBH  C24  H11  SING  N  N  44  
VBH  C19  H12  SING  N  N  45  
VBH  C23  H13  SING  N  N  46  
VBH  C23  H14  SING  N  N  47  
VBH  C23  H15  SING  N  N  48  
VBH  C2   H16  SING  N  N  49  
VBH  C2   H17  SING  N  N  50  
VBH  N    H18  SING  N  N  51  
VBH  C    H19  SING  N  N  52  
VBH  C    H20  SING  N  N  53  
VBH  C    H21  SING  N  N  54  
VBH  C3   H22  SING  N  N  55  
VBH  C3   H23  SING  N  N  56  
VBH  C16  H24  SING  N  N  57  
VBH  C14  H25  SING  N  N  58  
VBH  C12  H26  SING  N  N  59  
VBH  C9   H27  SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VBH  InChI             InChI                 1.03   "InChI=1S/C25H27N3O3/c1-18-14-21(15-27(3)24(18)30)25(31)28(17-23(29)26-2)16-22(19-10-6-4-7-11-19)20-12-8-5-9-13-20/h4-15,22H,16-17H2,1-3H3,(H,26,29)"  
VBH  InChIKey          InChI                 1.03   YSBWPORVNMMWTB-UHFFFAOYSA-N  
VBH  SMILES_CANONICAL  CACTVS                3.385  "CNC(=O)CN(CC(c1ccccc1)c2ccccc2)C(=O)C3=CN(C)C(=O)C(=C3)C"  
VBH  SMILES            CACTVS                3.385  "CNC(=O)CN(CC(c1ccccc1)c2ccccc2)C(=O)C3=CN(C)C(=O)C(=C3)C"  
VBH  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1=CC(=CN(C1=O)C)C(=O)N(CC(c2ccccc2)c3ccccc3)CC(=O)NC"  
VBH  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1=CC(=CN(C1=O)C)C(=O)N(CC(c2ccccc2)c3ccccc3)CC(=O)NC"  
#
_pdbx_chem_comp_identifier.comp_id          VBH
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-(2,2-diphenylethyl)-1,5-dimethyl-~{N}-[2-(methylamino)-2-oxidanylidene-ethyl]-6-oxidanylidene-pyridine-3-carboxamide"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VBH
_pdbx_chem_comp_synonyms.name        "N-(2,2-diphenylethyl)-1,5-dimethyl-N-(2-(methylamino)-2-oxoethyl)-6-oxo-1,6-dihydropyridine-3-carboxamide"
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VBH  "Create component"  2021-05-04  PDBE  
VBH  "Initial release"   2021-07-21  RCSB  
##
