data_1II
#

_chem_comp.id                                   1II
_chem_comp.name                                 "3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H29 F2 N3 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2022-01-23
_chem_comp.pdbx_modified_date                   2022-04-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       461.546
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1II
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7WLL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1II  C07  C1   C  0  1  N  N  N  134.314  131.008  142.085   3.940  -0.707  -0.308  C07  1II   1  
1II  C08  C2   C  0  1  N  N  N  134.540  129.795  142.837   2.931  -0.357   0.789  C08  1II   2  
1II  C09  C3   C  0  1  N  N  N  133.516  130.842  140.863   3.379  -0.273  -1.665  C09  1II   3  
1II  C10  C4   C  0  1  N  N  N  134.805  128.527  142.015   1.596  -1.041   0.485  C10  1II   4  
1II  C11  C5   C  0  1  N  N  N  133.047  129.418  140.574   2.031  -0.959  -1.898  C11  1II   5  
1II  C12  C6   C  0  1  N  N  N  134.758  128.304  139.757  -0.244  -1.120  -1.086  C12  1II   6  
1II  C13  C7   C  0  1  N  N  N  136.216  128.790  139.867  -1.234  -0.516  -0.089  C13  1II   7  
1II  C14  C8   C  0  1  Y  N  N  133.968  133.209  143.445   6.441  -0.612   0.154  C14  1II   8  
1II  C15  C9   C  0  1  N  N  N  136.815  129.264  138.540  -2.635  -1.067  -0.363  C15  1II   9  
1II  C16  C10  C  0  1  N  N  N  132.361  131.759  143.518   5.364   1.326   0.018  C16  1II  10  
1II  C17  C11  C  0  1  N  N  N  135.930  128.900  137.350  -3.625  -0.462   0.635  C17  1II  11  
1II  C18  C12  C  0  1  Y  N  N  132.976  133.705  144.239   7.363   0.417   0.357  C18  1II  12  
1II  C19  C13  C  0  1  Y  N  N  135.139  133.975  143.236   6.862  -1.932   0.185  C19  1II  13  
1II  C20  C14  C  0  1  Y  N  N  135.802  130.071  136.402  -3.728   1.023   0.403  C20  1II  14  
1II  C21  C15  C  0  1  Y  N  N  136.570  127.852  136.465  -4.979  -1.096   0.444  C21  1II  15  
1II  C22  C16  C  0  1  Y  N  N  133.104  134.978  144.849   8.696   0.115   0.587  C22  1II  16  
1II  C23  C17  C  0  1  Y  N  N  135.268  135.223  143.837   8.193  -2.224   0.415  C23  1II  17  
1II  C24  C18  C  0  1  Y  N  N  134.251  135.726  144.644   9.107  -1.204   0.615  C24  1II  18  
1II  C25  C19  C  0  1  Y  N  N  134.624  130.249  135.706  -3.996   1.508  -0.864  C25  1II  19  
1II  C26  C20  C  0  1  Y  N  N  137.935  127.682  136.499  -5.648  -1.635   1.528  C26  1II  20  
1II  C27  C21  C  0  1  Y  N  N  136.875  130.918  136.227  -3.560   1.900   1.458  C27  1II  21  
1II  C28  C22  C  0  1  Y  N  N  135.775  127.105  135.617  -5.554  -1.132  -0.812  C28  1II  22  
1II  C29  C23  C  0  1  Y  N  N  134.503  131.309  134.832  -4.090   2.870  -1.077  C29  1II  23  
1II  C30  C24  C  0  1  Y  N  N  138.510  126.730  135.685  -6.889  -2.216   1.355  C30  1II  24  
1II  C31  C25  C  0  1  Y  N  N  136.753  131.976  135.347  -3.655   3.263   1.247  C31  1II  25  
1II  C32  C26  C  0  1  Y  N  N  136.353  126.157  134.800  -6.799  -1.708  -0.987  C32  1II  26  
1II  C33  C27  C  0  1  Y  N  N  135.569  132.170  134.654  -3.917   3.749  -0.022  C33  1II  27  
1II  C34  C28  C  0  1  Y  N  N  137.720  125.978  134.839  -7.464  -2.258   0.096  C34  1II  28  
1II  F01  F1   F  0  1  N  N  N  135.447  133.221  133.793  -4.009   5.081  -0.230  F01  1II  29  
1II  F02  F2   F  0  1  N  N  N  138.299  125.046  134.036  -8.680  -2.821  -0.074  F02  1II  30  
1II  N04  N1   N  0  1  N  N  N  134.086  128.440  140.747   1.101  -0.591  -0.823  N04  1II  31  
1II  N05  N2   N  0  1  N  N  N  133.550  131.988  143.011   5.203  -0.009  -0.054  N05  1II  32  
1II  N06  N3   N  0  1  N  N  N  131.986  132.781  144.263   6.655   1.614   0.270  N06  1II  33  
1II  O03  O1   O  0  1  N  N  N  131.605  130.607  143.297   4.476   2.147  -0.117  O03  1II  34  
1II  H1   H1   H  0  1  N  N  N  135.281  131.465  141.826   4.114  -1.783  -0.313  H1   1II  35  
1II  H2   H2   H  0  1  N  N  N  133.649  129.613  143.456   3.306  -0.702   1.752  H2   1II  36  
1II  H3   H3   H  0  1  N  N  N  135.411  129.961  143.488   2.789   0.724   0.820  H3   1II  37  
1II  H4   H4   H  0  1  N  N  N  134.126  131.178  140.011   3.243   0.809  -1.673  H4   1II  38  
1II  H5   H5   H  0  1  N  N  N  132.625  131.481  140.950   4.075  -0.558  -2.455  H5   1II  39  
1II  H6   H6   H  0  1  N  N  N  134.518  127.660  142.628   1.738  -2.121   0.468  H6   1II  40  
1II  H7   H7   H  0  1  N  N  N  135.882  128.483  141.798   0.872  -0.781   1.256  H7   1II  41  
1II  H8   H8   H  0  1  N  N  N  132.690  129.370  139.535   1.622  -0.640  -2.857  H8   1II  42  
1II  H9   H9   H  0  1  N  N  N  132.220  129.176  141.257   2.171  -2.040  -1.904  H9   1II  43  
1II  H10  H10  H  0  1  N  N  N  134.276  128.864  138.942  -0.235  -2.205  -0.978  H10  1II  44  
1II  H11  H11  H  0  1  N  N  N  134.777  127.233  139.506  -0.545  -0.858  -2.101  H11  1II  45  
1II  H12  H12  H  0  1  N  N  N  136.830  127.960  140.247  -0.933  -0.778   0.926  H12  1II  46  
1II  H13  H13  H  0  1  N  N  N  136.249  129.627  140.580  -1.242   0.569  -0.197  H13  1II  47  
1II  H14  H14  H  0  1  N  N  N  137.800  128.793  138.407  -2.936  -0.805  -1.378  H14  1II  48  
1II  H15  H15  H  0  1  N  N  N  136.933  130.357  138.574  -2.626  -2.151  -0.255  H15  1II  49  
1II  H16  H16  H  0  1  N  N  N  134.940  128.567  137.694  -3.276  -0.648   1.650  H16  1II  50  
1II  H17  H17  H  0  1  N  N  N  135.932  133.591  142.611   6.152  -2.731   0.029  H17  1II  51  
1II  H18  H18  H  0  1  N  N  N  132.310  135.363  145.471   9.411   0.908   0.743  H18  1II  52  
1II  H19  H19  H  0  1  N  N  N  136.163  135.806  143.677   8.522  -3.253   0.439  H19  1II  53  
1II  H20  H20  H  0  1  N  N  N  134.356  136.695  145.108  10.145  -1.439   0.794  H20  1II  54  
1II  H21  H21  H  0  1  N  N  N  133.802  129.563  135.845  -4.131   0.822  -1.687  H21  1II  55  
1II  H22  H22  H  0  1  N  N  N  138.546  128.285  137.154  -5.199  -1.602   2.510  H22  1II  56  
1II  H23  H23  H  0  1  N  N  N  137.796  130.757  136.769  -3.355   1.520   2.448  H23  1II  57  
1II  H24  H24  H  0  1  N  N  N  134.707  127.263  135.594  -5.031  -0.711  -1.658  H24  1II  58  
1II  H25  H25  H  0  1  N  N  N  133.582  131.465  134.291  -4.299   3.248  -2.067  H25  1II  59  
1II  H26  H26  H  0  1  N  N  N  139.578  126.572  135.709  -7.411  -2.638   2.201  H26  1II  60  
1II  H27  H27  H  0  1  N  N  N  137.582  132.653  135.199  -3.523   3.947   2.072  H27  1II  61  
1II  H28  H28  H  0  1  N  N  N  135.743  125.562  134.137  -7.246  -1.740  -1.969  H28  1II  62  
1II  H30  H30  H  0  1  N  N  N  131.121  132.860  144.759   7.029   2.503   0.368  H30  1II  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1II  F01  C33  SING  N  N   1  
1II  F02  C34  SING  N  N   2  
1II  C33  C29  DOUB  Y  N   3  
1II  C33  C31  SING  Y  N   4  
1II  C32  C34  DOUB  Y  N   5  
1II  C32  C28  SING  Y  N   6  
1II  C29  C25  SING  Y  N   7  
1II  C34  C30  SING  Y  N   8  
1II  C31  C27  DOUB  Y  N   9  
1II  C28  C21  DOUB  Y  N  10  
1II  C30  C26  DOUB  Y  N  11  
1II  C25  C20  DOUB  Y  N  12  
1II  C27  C20  SING  Y  N  13  
1II  C20  C17  SING  N  N  14  
1II  C21  C26  SING  Y  N  15  
1II  C21  C17  SING  N  N  16  
1II  C17  C15  SING  N  N  17  
1II  C15  C13  SING  N  N  18  
1II  C12  C13  SING  N  N  19  
1II  C12  N04  SING  N  N  20  
1II  C11  N04  SING  N  N  21  
1II  C11  C09  SING  N  N  22  
1II  N04  C10  SING  N  N  23  
1II  C09  C07  SING  N  N  24  
1II  C10  C08  SING  N  N  25  
1II  C07  C08  SING  N  N  26  
1II  C07  N05  SING  N  N  27  
1II  N05  C14  SING  N  N  28  
1II  N05  C16  SING  N  N  29  
1II  C19  C14  DOUB  Y  N  30  
1II  C19  C23  SING  Y  N  31  
1II  O03  C16  DOUB  N  N  32  
1II  C14  C18  SING  Y  N  33  
1II  C16  N06  SING  N  N  34  
1II  C23  C24  DOUB  Y  N  35  
1II  C18  N06  SING  N  N  36  
1II  C18  C22  DOUB  Y  N  37  
1II  C24  C22  SING  Y  N  38  
1II  C07  H1   SING  N  N  39  
1II  C08  H2   SING  N  N  40  
1II  C08  H3   SING  N  N  41  
1II  C09  H4   SING  N  N  42  
1II  C09  H5   SING  N  N  43  
1II  C10  H6   SING  N  N  44  
1II  C10  H7   SING  N  N  45  
1II  C11  H8   SING  N  N  46  
1II  C11  H9   SING  N  N  47  
1II  C12  H10  SING  N  N  48  
1II  C12  H11  SING  N  N  49  
1II  C13  H12  SING  N  N  50  
1II  C13  H13  SING  N  N  51  
1II  C15  H14  SING  N  N  52  
1II  C15  H15  SING  N  N  53  
1II  C17  H16  SING  N  N  54  
1II  C19  H17  SING  N  N  55  
1II  C22  H18  SING  N  N  56  
1II  C23  H19  SING  N  N  57  
1II  C24  H20  SING  N  N  58  
1II  C25  H21  SING  N  N  59  
1II  C26  H22  SING  N  N  60  
1II  C27  H23  SING  N  N  61  
1II  C28  H24  SING  N  N  62  
1II  C29  H25  SING  N  N  63  
1II  C30  H26  SING  N  N  64  
1II  C31  H27  SING  N  N  65  
1II  C32  H28  SING  N  N  66  
1II  N06  H30  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1II  InChI             InChI                 1.03   "InChI=1S/C28H29F2N3O/c29-22-11-7-20(8-12-22)25(21-9-13-23(30)14-10-21)4-3-17-32-18-15-24(16-19-32)33-27-6-2-1-5-26(27)31-28(33)34/h1-2,5-14,24-25H,3-4,15-19H2,(H,31,34)"  
1II  InChIKey          InChI                 1.03   YVUQSNJEYSNKRX-UHFFFAOYSA-N  
1II  SMILES_CANONICAL  CACTVS                3.385  "Fc1ccc(cc1)C(CCCN2CCC(CC2)N3C(=O)Nc4ccccc34)c5ccc(F)cc5"  
1II  SMILES            CACTVS                3.385  "Fc1ccc(cc1)C(CCCN2CCC(CC2)N3C(=O)Nc4ccccc34)c5ccc(F)cc5"  
1II  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)NC(=O)N2C3CCN(CC3)CCCC(c4ccc(cc4)F)c5ccc(cc5)F"  
1II  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)NC(=O)N2C3CCN(CC3)CCCC(c4ccc(cc4)F)c5ccc(cc5)F"  
#
_pdbx_chem_comp_identifier.comp_id          1II
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1II  "Create component"  2022-01-23  PDBJ  
1II  "Initial release"   2022-05-04  RCSB  
##
