data_2RI
# 
_chem_comp.id                                    2RI 
_chem_comp.name                                  "(2~{R})-~{N}-dibenzofuran-3-yl-~{N}-[(1~{R})-2-[[(1~{S})-1-(4-fluorophenyl)ethyl]amino]-2-oxidanylidene-1-pyridin-3-yl-ethyl]-2-oxidanyl-propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H26 F N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        511.544 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2RI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FAZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2RI C10 C1  C 0 1 N N R N N N 20.110 6.862  -25.652 0.588  -0.608 0.637  C10 2RI 1  
2RI C13 C2  C 0 1 Y N N N N N 16.518 7.387  -24.420 -0.365 2.824  1.882  C13 2RI 2  
2RI C20 C3  C 0 1 Y N N N N N 23.158 4.323  -28.215 -3.818 -0.040 0.638  C20 2RI 3  
2RI C22 C4  C 0 1 Y N N N N N 24.563 3.639  -29.792 -5.871 0.843  0.630  C22 2RI 4  
2RI C24 C5  C 0 1 Y N N N N N 26.562 5.010  -29.567 -6.601 0.612  -1.667 C24 2RI 5  
2RI C26 C6  C 0 1 Y N N N N N 26.454 3.304  -31.301 -8.043 1.614  -0.037 C26 2RI 6  
2RI C28 C7  C 0 1 Y N N N N N 24.304 5.106  -28.086 -4.276 -0.154 -0.683 C28 2RI 7  
2RI C02 C8  C 0 1 Y N N N N N 22.887 6.450  -31.608 7.502  1.358  0.256  C02 2RI 8  
2RI C03 C9  C 0 1 Y N N N N N 23.319 7.110  -30.467 7.462  0.291  -0.626 C03 2RI 9  
2RI C04 C10 C 0 1 Y N N N N N 22.406 7.797  -29.686 6.254  -0.122 -1.155 C04 2RI 10 
2RI C05 C11 C 0 1 Y N N N N N 21.065 7.822  -30.045 5.086  0.529  -0.803 C05 2RI 11 
2RI C06 C12 C 0 1 N N S N N N 20.076 8.595  -29.180 3.769  0.077  -1.380 C06 2RI 12 
2RI C07 C13 C 0 1 N N N N N N 20.303 10.100 -29.357 3.376  0.998  -2.536 C07 2RI 13 
2RI C09 C14 C 0 1 N N N N N N 19.922 7.017  -27.170 1.650  -0.662 -0.431 C09 2RI 14 
2RI C11 C15 C 0 1 Y N N N N N 18.665 6.571  -25.185 0.020  0.786  0.711  C11 2RI 15 
2RI C12 C16 C 0 1 Y N N N N N 17.846 7.636  -24.812 0.170  1.545  1.861  C12 2RI 16 
2RI C14 C17 C 0 1 Y N N N N N 16.046 6.080  -24.412 -1.025 3.296  0.763  C14 2RI 17 
2RI C16 C18 C 0 1 Y N N N N N 18.132 5.283  -25.150 -0.644 1.329  -0.373 C16 2RI 18 
2RI C18 C19 C 0 1 Y N N N N N 22.106 5.490  -26.367 -1.756 -1.084 -0.019 C18 2RI 19 
2RI C19 C20 C 0 1 Y N N N N N 22.052 4.505  -27.344 -2.552 -0.511 0.960  C19 2RI 20 
2RI C23 C21 C 0 1 Y N N N N N 25.257 4.650  -29.146 -5.631 0.429  -0.687 C23 2RI 21 
2RI C25 C22 C 0 1 Y N N N N N 27.158 4.329  -30.640 -7.803 1.203  -1.338 C25 2RI 22 
2RI C27 C23 C 0 1 Y N N N N N 25.166 2.959  -30.895 -7.085 1.443  0.941  C27 2RI 23 
2RI C29 C24 C 0 1 Y N N N N N 24.371 6.094  -27.087 -3.470 -0.731 -1.660 C29 2RI 24 
2RI C30 C25 C 0 1 Y N N N N N 23.268 6.278  -26.248 -2.216 -1.193 -1.328 C30 2RI 25 
2RI C31 C26 C 0 1 N N N N N N 21.107 5.104  -24.067 -0.236 -2.880 0.330  C31 2RI 26 
2RI C32 C27 C 0 1 N N R N N N 22.032 3.931  -23.687 1.111  -3.392 0.772  C32 2RI 27 
2RI C34 C28 C 0 1 N N N N N N 23.524 4.099  -23.847 1.263  -3.188 2.281  C34 2RI 28 
2RI C37 C29 C 0 1 Y N N N N N 20.628 7.171  -31.192 5.125  1.594  0.078  C37 2RI 29 
2RI C38 C30 C 0 1 Y N N N N N 21.539 6.475  -31.977 6.332  2.009  0.608  C38 2RI 30 
2RI F01 F1  F 0 1 N N N N N N 23.801 5.769  -32.355 8.682  1.759  0.778  F01 2RI 31 
2RI N08 N1  N 0 1 N N N N N N 20.238 8.300  -27.768 2.737  0.129  -0.341 N08 2RI 32 
2RI N15 N2  N 0 1 Y N N N N N 16.856 5.093  -24.768 -1.144 2.548  -0.316 N15 2RI 33 
2RI N17 N3  N 0 1 N N N N N N 21.073 5.796  -25.370 -0.481 -1.555 0.312  N17 2RI 34 
2RI O21 O1  O 0 1 Y N N N N N 23.345 3.472  -29.229 -4.781 0.555  1.376  O21 2RI 35 
2RI O33 O2  O 0 1 N N N N N N 21.866 3.804  -22.296 1.215  -4.784 0.467  O33 2RI 36 
2RI O35 O3  O 0 1 N N N N N N 20.311 5.388  -23.226 -1.100 -3.661 -0.010 O35 2RI 37 
2RI O36 O4  O 0 1 N N N N N N 19.502 6.132  -27.858 1.525  -1.417 -1.372 O36 2RI 38 
2RI H1  H1  H 0 1 N N N N N N 20.450 7.816  -25.222 1.027  -0.873 1.599  H1  2RI 39 
2RI H2  H2  H 0 1 N N N N N N 15.873 8.202  -24.129 -0.271 3.442  2.763  H2  2RI 40 
2RI H3  H3  H 0 1 N N N N N N 27.095 5.804  -29.065 -6.414 0.292  -2.682 H3  2RI 41 
2RI H4  H4  H 0 1 N N N N N N 26.915 2.782  -32.127 -8.984 2.081  0.212  H4  2RI 42 
2RI H5  H5  H 0 1 N N N N N N 24.363 7.088  -30.189 8.374  -0.217 -0.901 H5  2RI 43 
2RI H6  H6  H 0 1 N N N N N N 22.737 8.314  -28.797 6.222  -0.953 -1.843 H6  2RI 44 
2RI H7  H7  H 0 1 N N N N N N 19.053 8.349  -29.500 3.864  -0.945 -1.746 H7  2RI 45 
2RI H8  H8  H 0 1 N N N N N N 19.588 10.655 -28.732 3.280  2.020  -2.170 H8  2RI 46 
2RI H9  H9  H 0 1 N N N N N N 21.329 10.354 -29.054 4.143  0.959  -3.309 H9  2RI 47 
2RI H10 H10 H 0 1 N N N N N N 20.155 10.371 -30.413 2.423  0.671  -2.954 H10 2RI 48 
2RI H11 H11 H 0 1 N N N N N N 18.229 8.646  -24.824 0.691  1.150  2.721  H11 2RI 49 
2RI H12 H12 H 0 1 N N N N N N 15.028 5.870  -24.118 -1.447 4.290  0.772  H12 2RI 50 
2RI H13 H13 H 0 1 N N N N N N 18.743 4.438  -25.430 -0.755 0.748  -1.277 H13 2RI 51 
2RI H14 H14 H 0 1 N N N N N N 21.175 3.882  -27.441 -2.187 -0.429 1.973  H14 2RI 52 
2RI H15 H15 H 0 1 N N N N N N 28.156 4.591  -30.959 -8.560 1.342  -2.096 H15 2RI 53 
2RI H16 H16 H 0 1 N N N N N N 24.625 2.180  -31.412 -7.284 1.767  1.952  H16 2RI 54 
2RI H17 H17 H 0 1 N N N N N N 25.258 6.699  -26.970 -3.828 -0.817 -2.675 H17 2RI 55 
2RI H18 H18 H 0 1 N N N N N N 23.308 7.045  -25.488 -1.589 -1.642 -2.085 H18 2RI 56 
2RI H19 H19 H 0 1 N N N N N N 21.702 3.023  -24.212 1.896  -2.845 0.251  H19 2RI 57 
2RI H20 H20 H 0 1 N N N N N N 24.033 3.176  -23.534 1.056  -2.147 2.530  H20 2RI 58 
2RI H21 H21 H 0 1 N N N N N N 23.758 4.307  -24.901 0.561  -3.834 2.808  H21 2RI 59 
2RI H22 H22 H 0 1 N N N N N N 23.868 4.937  -23.223 2.281  -3.437 2.580  H22 2RI 60 
2RI H23 H23 H 0 1 N N N N N N 19.586 7.206  -31.472 4.212  2.101  0.352  H23 2RI 61 
2RI H24 H24 H 0 1 N N N N N N 21.208 5.957  -32.865 6.362  2.840  1.296  H24 2RI 62 
2RI H25 H25 H 0 1 N N N N N N 20.588 9.024  -27.173 2.837  0.733  0.411  H25 2RI 63 
2RI H26 H26 H 0 1 N N N N N N 21.166 4.377  -22.007 2.059  -5.181 0.725  H26 2RI 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2RI F01 C02 SING N N 1  
2RI C38 C02 DOUB Y N 2  
2RI C38 C37 SING Y N 3  
2RI C02 C03 SING Y N 4  
2RI C26 C27 DOUB Y N 5  
2RI C26 C25 SING Y N 6  
2RI C37 C05 DOUB Y N 7  
2RI C27 C22 SING Y N 8  
2RI C25 C24 DOUB Y N 9  
2RI C03 C04 DOUB Y N 10 
2RI C05 C04 SING Y N 11 
2RI C05 C06 SING N N 12 
2RI C22 O21 SING Y N 13 
2RI C22 C23 DOUB Y N 14 
2RI C24 C23 SING Y N 15 
2RI C07 C06 SING N N 16 
2RI O21 C20 SING Y N 17 
2RI C06 N08 SING N N 18 
2RI C23 C28 SING Y N 19 
2RI C20 C28 DOUB Y N 20 
2RI C20 C19 SING Y N 21 
2RI C28 C29 SING Y N 22 
2RI O36 C09 DOUB N N 23 
2RI N08 C09 SING N N 24 
2RI C19 C18 DOUB Y N 25 
2RI C09 C10 SING N N 26 
2RI C29 C30 DOUB Y N 27 
2RI C18 C30 SING Y N 28 
2RI C18 N17 SING N N 29 
2RI C10 N17 SING N N 30 
2RI C10 C11 SING N N 31 
2RI N17 C31 SING N N 32 
2RI C11 C16 DOUB Y N 33 
2RI C11 C12 SING Y N 34 
2RI C16 N15 SING Y N 35 
2RI C12 C13 DOUB Y N 36 
2RI N15 C14 DOUB Y N 37 
2RI C13 C14 SING Y N 38 
2RI C31 C32 SING N N 39 
2RI C31 O35 DOUB N N 40 
2RI C34 C32 SING N N 41 
2RI C32 O33 SING N N 42 
2RI C10 H1  SING N N 43 
2RI C13 H2  SING N N 44 
2RI C24 H3  SING N N 45 
2RI C26 H4  SING N N 46 
2RI C03 H5  SING N N 47 
2RI C04 H6  SING N N 48 
2RI C06 H7  SING N N 49 
2RI C07 H8  SING N N 50 
2RI C07 H9  SING N N 51 
2RI C07 H10 SING N N 52 
2RI C12 H11 SING N N 53 
2RI C14 H12 SING N N 54 
2RI C16 H13 SING N N 55 
2RI C19 H14 SING N N 56 
2RI C25 H15 SING N N 57 
2RI C27 H16 SING N N 58 
2RI C29 H17 SING N N 59 
2RI C30 H18 SING N N 60 
2RI C32 H19 SING N N 61 
2RI C34 H20 SING N N 62 
2RI C34 H21 SING N N 63 
2RI C34 H22 SING N N 64 
2RI C37 H23 SING N N 65 
2RI C38 H24 SING N N 66 
2RI N08 H25 SING N N 67 
2RI O33 H26 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2RI InChI            InChI                1.03  "InChI=1S/C30H26FN3O4/c1-18(20-9-11-22(31)12-10-20)33-29(36)28(21-6-5-15-32-17-21)34(30(37)19(2)35)23-13-14-25-24-7-3-4-8-26(24)38-27(25)16-23/h3-19,28,35H,1-2H3,(H,33,36)/t18-,19+,28+/m0/s1" 
2RI InChIKey         InChI                1.03  ZZPWEZVCHNBBBZ-DORSKGMSSA-N                                                                                                                                                                     
2RI SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)C(=O)N([C@@H](C(=O)N[C@@H](C)c1ccc(F)cc1)c2cccnc2)c3ccc4c(oc5ccccc45)c3"                                                                                                             
2RI SMILES           CACTVS               3.385 "C[CH](O)C(=O)N([CH](C(=O)N[CH](C)c1ccc(F)cc1)c2cccnc2)c3ccc4c(oc5ccccc45)c3"                                                                                                                   
2RI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccc(cc1)F)NC(=O)[C@@H](c2cccnc2)N(c3ccc4c5ccccc5oc4c3)C(=O)[C@@H](C)O"                                                                                                               
2RI SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1ccc(cc1)F)NC(=O)C(c2cccnc2)N(c3ccc4c5ccccc5oc4c3)C(=O)C(C)O"                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           2RI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-~{N}-dibenzofuran-3-yl-~{N}-[(1~{R})-2-[[(1~{S})-1-(4-fluorophenyl)ethyl]amino]-2-oxidanylidene-1-pyridin-3-yl-ethyl]-2-oxidanyl-propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2RI "Create component" 2021-07-09 PDBJ 
2RI "Initial release"  2021-07-21 RCSB 
2RI "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            2RI 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C32 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
