data_5DI
#

_chem_comp.id                                   5DI
_chem_comp.name                                 "alpha-D-threo-hexo-2,5-diulo-2,6-pyranosyl fluoride"
_chem_comp.type                                 D-SACCHARIDE
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H9 F O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;2-OXO-1,2,DIDEOXY-5F-D-IDOPYRANOSE; alpha-D-threo-hexo-2,5-diulo-2,6-syl fluoride; D-threo-hexo-2,5-diulo-2,6-syl
fluoride; threo-hexo-2,5-diulo-2,6-syl fluoride
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-03-14
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       180.131
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5DI
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4AMW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  5DI  "2-OXO-1,2,DIDEOXY-5F-D-IDOPYRANOSE"             PDB  ?  
2  5DI  "alpha-D-threo-hexo-2,5-diulo-2,6-syl fluoride"  PDB  ?  
3  5DI  "D-threo-hexo-2,5-diulo-2,6-syl fluoride"        PDB  ?  
4  5DI  "threo-hexo-2,5-diulo-2,6-syl fluoride"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5DI  C1    C1    C  0  1  N  N  N  52.957  25.427  42.152  -1.250   1.045   1.126  C1    5DI   1  
5DI  C2    C2    C  0  1  N  N  N  53.367  24.767  41.058  -1.906   0.000   0.249  C2    5DI   2  
5DI  O2    O2    O  0  1  N  N  N  53.309  25.354  39.861  -3.012  -0.417   0.496  O2    5DI   3  
5DI  C3    C3    C  0  1  N  N  S  53.867  23.363  41.214  -1.129  -0.503  -0.951  C3    5DI   4  
5DI  O3    O3    O  0  1  N  N  N  54.672  23.016  40.080  -1.060   0.520  -1.946  O3    5DI   5  
5DI  C4    C4    C  0  1  N  N  S  54.661  23.231  42.515   0.286  -0.865  -0.480  C4    5DI   6  
5DI  O4    O4    O  0  1  N  N  N  55.065  21.867  42.599   0.227  -2.004   0.381  O4    5DI   7  
5DI  C5    C5    C  0  1  N  N  R  53.862  23.695  43.752   0.877   0.323   0.283  C5    5DI   8  
5DI  O5    O5    O  0  1  N  N  N  53.245  24.952  43.503   0.078   0.607   1.432  O5    5DI   9  
5DI  C6    C6    C  0  1  N  N  N  52.775  22.727  44.207   2.302  -0.015   0.725  C6    5DI  10  
5DI  O6    O6    O  0  1  N  Y  N  51.671  22.625  43.292   3.105  -0.291  -0.425  O6    5DI  11  
5DI  F1    F1    F  0  1  N  Y  N  54.641  23.872  44.798   0.905   1.445  -0.553  F1    5DI  12  
5DI  H11C  H11C  H  0  0  N  N  N  53.391  26.435  42.082  -1.210   1.997   0.597  H11C  5DI  13  
5DI  H12C  H12C  H  0  0  N  N  N  51.862  25.494  42.077  -1.820   1.161   2.048  H12C  5DI  14  
5DI  H3C   H3C   H  0  1  N  N  N  53.001  22.687  41.270  -1.618  -1.386  -1.362  H3C   5DI  15  
5DI  H3O   H3O   H  0  1  N  N  N  54.590  23.690  39.415  -1.923   0.811  -2.270  H3O   5DI  16  
5DI  H4C   H4C   H  0  1  N  N  N  55.553  23.870  42.433   0.910  -1.093  -1.344  H4C   5DI  17  
5DI  H4O   H4O   H  0  1  N  N  N  55.565  21.733  43.396  -0.145  -2.793  -0.036  H4O   5DI  18  
5DI  H61C  H61C  H  0  0  N  N  N  53.224  21.729  44.321   2.724   0.831   1.268  H61C  5DI  19  
5DI  H62C  H62C  H  0  0  N  N  N  52.390  23.069  45.179   2.283  -0.891   1.374  H62C  5DI  20  
5DI  H6O   H6O   H  0  1  N  N  N  51.033  22.009  43.633   4.023  -0.514  -0.219  H6O   5DI  21  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5DI  C1  C2    SING  N  N   1  
5DI  C1  O5    SING  N  N   2  
5DI  C2  O2    DOUB  N  N   3  
5DI  C2  C3    SING  N  N   4  
5DI  C3  O3    SING  N  N   5  
5DI  C3  C4    SING  N  N   6  
5DI  C4  O4    SING  N  N   7  
5DI  C4  C5    SING  N  N   8  
5DI  C5  O5    SING  N  N   9  
5DI  C5  C6    SING  N  N  10  
5DI  C5  F1    SING  N  N  11  
5DI  C6  O6    SING  N  N  12  
5DI  C1  H11C  SING  N  N  13  
5DI  C1  H12C  SING  N  N  14  
5DI  C3  H3C   SING  N  N  15  
5DI  O3  H3O   SING  N  N  16  
5DI  C4  H4C   SING  N  N  17  
5DI  O4  H4O   SING  N  N  18  
5DI  C6  H61C  SING  N  N  19  
5DI  C6  H62C  SING  N  N  20  
5DI  O6  H6O   SING  N  N  21  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5DI  SMILES            ACDLabs               12.01  "O=C1C(O)C(O)C(F)(OC1)CO"  
5DI  InChI             InChI                 1.03   "InChI=1S/C6H9FO5/c7-6(2-8)5(11)4(10)3(9)1-12-6/h4-5,8,10-11H,1-2H2/t4-,5+,6+/m1/s1"  
5DI  InChIKey          InChI                 1.03   VCJAHEOIRFFLTQ-SRQIZXRXSA-N  
5DI  SMILES_CANONICAL  CACTVS                3.385  "OC[C@]1(F)OCC(=O)[C@@H](O)[C@@H]1O"  
5DI  SMILES            CACTVS                3.385  "OC[C]1(F)OCC(=O)[CH](O)[CH]1O"  
5DI  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "C1C(=O)[C@H]([C@@H]([C@@](O1)(CO)F)O)O"  
5DI  SMILES            "OpenEye OEToolkits"  1.9.2  "C1C(=O)C(C(C(O1)(CO)F)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5DI  "SYSTEMATIC NAME"  ACDLabs               12.01  "alpha-D-threo-hexo-2,5-diulo-2,6-pyranosyl fluoride"  
5DI  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "(4S,5S,6R)-6-fluoranyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-one"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
5DI  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
5DI  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5DI  "Create component"    2012-03-14  EBI   
5DI  "Other modification"  2012-03-21  EBI   
5DI  "Initial release"     2013-03-27  RCSB  
5DI  "Modify descriptor"   2014-09-05  RCSB  
5DI  "Other modification"  2020-07-03  RCSB  
5DI  "Modify name"         2020-07-17  RCSB  
5DI  "Modify synonyms"     2020-07-17  RCSB  
##
