data_5II
#

_chem_comp.id                                   5II
_chem_comp.name                                 "methyl 2-deoxy-2-methyl-alpha-D-mannopyranoside"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H16 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-08-18
_chem_comp.pdbx_modified_date                   2022-01-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       192.210
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5II
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7FE1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5II  C9   C1   C  0  1  N  N  N  -80.607  20.754  -46.743   1.563  -2.703  -0.966  C9   5II   1  
5II  O1   O1   O  0  1  N  N  N  -80.421  19.315  -46.890   0.323  -1.994  -0.904  O1   5II   2  
5II  C1   C2   C  0  1  N  N  S  -80.739  18.540  -45.714  -0.026  -1.547   0.408  C1   5II   3  
5II  C2   C3   C  0  1  N  N  S  -80.438  17.064  -45.997  -1.466  -1.028   0.404  C2   5II   4  
5II  C7   C4   C  0  1  N  N  N  -80.283  16.320  -44.683  -1.860  -0.602   1.820  C7   5II   5  
5II  C3   C5   C  0  1  N  N  R  -81.546  16.513  -46.938  -1.564   0.175  -0.539  C3   5II   6  
5II  O3   O2   O  0  1  N  N  N  -81.422  15.101  -47.047  -2.888   0.712  -0.493  O3   5II   7  
5II  C4   C6   C  0  1  N  N  S  -82.919  16.896  -46.451  -0.562   1.244  -0.091  C4   5II   8  
5II  O4   O3   O  0  1  N  N  N  -83.992  16.448  -47.329  -0.594   2.341  -1.005  O4   5II   9  
5II  C5   C7   C  0  1  N  N  R  -83.051  18.406  -46.166   0.843   0.637  -0.068  C5   5II  10  
5II  O5   O4   O  0  1  N  N  N  -82.070  18.816  -45.266   0.857  -0.495   0.804  O5   5II  11  
5II  C6   C8   C  0  1  N  N  N  -84.380  18.757  -45.508   1.842   1.681   0.436  C6   5II  12  
5II  O6   O5   O  0  1  N  N  N  -84.534  20.184  -45.386   3.167   1.154   0.348  O6   5II  13  
5II  H1   H1   H  0  1  N  N  N  -80.341  21.257  -47.685   1.509  -3.586  -0.329  H1   5II  14  
5II  H2   H2   H  0  1  N  N  N  -81.659  20.965  -46.499   1.756  -3.008  -1.994  H2   5II  15  
5II  H3   H3   H  0  1  N  N  N  -79.962  21.126  -45.934   2.369  -2.055  -0.621  H3   5II  16  
5II  H4   H4   H  0  1  N  N  N  -80.048  18.851  -44.917   0.060  -2.377   1.110  H4   5II  17  
5II  H5   H5   H  0  1  N  N  N  -79.481  17.010  -46.537  -2.136  -1.816   0.061  H5   5II  18  
5II  H6   H6   H  0  1  N  N  N  -79.479  16.783  -44.092  -1.190   0.188   2.161  H6   5II  19  
5II  H7   H7   H  0  1  N  N  N  -81.227  16.369  -44.120  -2.885  -0.233   1.816  H7   5II  20  
5II  H8   H8   H  0  1  N  Y  N  -80.031  15.269  -44.885  -1.784  -1.457   2.491  H8   5II  21  
5II  H9   H9   H  0  1  N  N  N  -81.396  16.967  -47.928  -1.332  -0.139  -1.556  H9   5II  22  
5II  H10  H10  H  0  1  N  Y  N  -80.550  14.882  -47.355  -3.020   1.482  -1.062  H10  5II  23  
5II  H11  H11  H  0  1  N  N  N  -83.060  16.390  -45.485  -0.824   1.594   0.908  H11  5II  24  
5II  H12  H12  H  0  1  N  Y  N  -84.829  16.718  -46.970   0.018   3.057  -0.783  H12  5II  25  
5II  H13  H13  H  0  1  N  N  N  -82.966  18.954  -47.116   1.121   0.325  -1.074  H13  5II  26  
5II  H14  H14  H  0  1  N  N  N  -85.202  18.358  -46.121   1.767   2.580  -0.175  H14  5II  27  
5II  H15  H15  H  0  1  N  N  N  -84.416  18.304  -44.506   1.617   1.928   1.474  H15  5II  28  
5II  H16  H16  H  0  1  N  Y  N  -85.368  20.379  -44.974   3.854   1.764   0.652  H16  5II  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5II  O4  C4   SING  N  N   1  
5II  O3  C3   SING  N  N   2  
5II  C3  C4   SING  N  N   3  
5II  C3  C2   SING  N  N   4  
5II  O1  C9   SING  N  N   5  
5II  O1  C1   SING  N  N   6  
5II  C4  C5   SING  N  N   7  
5II  C5  C6   SING  N  N   8  
5II  C5  O5   SING  N  N   9  
5II  C2  C1   SING  N  N  10  
5II  C2  C7   SING  N  N  11  
5II  C1  O5   SING  N  N  12  
5II  C6  O6   SING  N  N  13  
5II  C9  H1   SING  N  N  14  
5II  C9  H2   SING  N  N  15  
5II  C9  H3   SING  N  N  16  
5II  C1  H4   SING  N  N  17  
5II  C2  H5   SING  N  N  18  
5II  C7  H6   SING  N  N  19  
5II  C7  H7   SING  N  N  20  
5II  C7  H8   SING  N  N  21  
5II  C3  H9   SING  N  N  22  
5II  O3  H10  SING  N  N  23  
5II  C4  H11  SING  N  N  24  
5II  O4  H12  SING  N  N  25  
5II  C5  H13  SING  N  N  26  
5II  C6  H14  SING  N  N  27  
5II  C6  H15  SING  N  N  28  
5II  O6  H16  SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5II  InChI             InChI                 1.03   "InChI=1S/C8H16O5/c1-4-6(10)7(11)5(3-9)13-8(4)12-2/h4-11H,3H2,1-2H3/t4-,5+,6+,7+,8-/m0/s1"  
5II  InChIKey          InChI                 1.03   GNHGGSMJGHLAKR-WCMLQCRESA-N  
5II  SMILES_CANONICAL  CACTVS                3.385  "CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1C"  
5II  SMILES            CACTVS                3.385  "CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1C"  
5II  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1[C@H]([C@@H]([C@H](O[C@@H]1OC)CO)O)O"  
5II  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(C(C(OC1OC)CO)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          5II
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-methoxy-5-methyl-oxane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
5II  "CARBOHYDRATE ISOMER"                  D         AUTHOR  ?  
5II  "CARBOHYDRATE RING"                    pyranose  PDB     ?  
5II  "CARBOHYDRATE ANOMER"                  alpha     AUTHOR  ?  
5II  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB     ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5II  "Create component"          2021-08-18  PDBJ  
5II  "Modify leaving atom flag"  2021-08-31  PDBJ  
5II  "Initial release"           2022-02-02  RCSB  
##
