data_6II
# 
_chem_comp.id                                    6II 
_chem_comp.name                                  "beta-D-glucopyranosyl 1,3,4-trisphosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H15 O15 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(2R,3R,4R,5R,6S)-2-(hydroxymethyl)-5-oxidanyl-3,6-diphosphonooxy-oxan-4-yl] dihydrogen phosphate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-12 
_chem_comp.pdbx_modified_date                    2024-02-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        420.096 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6II 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PPF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6II C2  C1  C 0 1 N N R N N N 9.784  29.802 85.481 -0.914 -0.996 -0.657 C2  6II 1  
6II C3  C2  C 0 1 N N R N N N 11.176 29.677 86.070 0.426  -0.682 0.017  C3  6II 2  
6II C4  C3  C 0 1 N N R N N N 11.809 28.366 85.654 0.742  0.805  -0.168 C4  6II 3  
6II C5  C4  C 0 1 N N R N N N 11.825 28.263 84.140 -0.407 1.638  0.407  C5  6II 4  
6II C6  C5  C 0 1 N N N N N N 12.387 26.951 83.636 -0.127 3.124  0.172  C6  6II 5  
6II O01 O1  O 0 1 N N N N N N 8.688  29.634 83.365 -3.240 -0.341 -0.726 O01 6II 6  
6II O04 O2  O 0 1 N N N N N N 9.278  29.379 80.944 -4.777 1.200  0.553  O04 6II 7  
6II O03 O3  O 0 1 N N N N N N 6.866  29.688 81.598 -5.845 -0.401 -1.080 O03 6II 8  
6II O02 O4  O 0 1 N N N N N N 8.518  31.584 81.897 -4.806 -1.244 1.184  O02 6II 9  
6II P1  P1  P 0 1 N N N N N N 8.301  30.090 81.859 -4.669 -0.167 -0.005 P1  6II 10 
6II O11 O5  O 0 1 N N N N N N 12.814 26.400 87.640 3.833  0.611  -1.247 O11 6II 11 
6II O12 O6  O 0 1 N N N N N N 14.636 28.076 88.148 4.379  2.077  0.866  O12 6II 12 
6II O08 O7  O 0 1 N N N N N N 11.122 29.732 87.507 1.458  -1.468 -0.582 O08 6II 13 
6II P4  P2  P 0 1 N N N N N N 13.928 27.258 87.087 3.254  1.714  -0.227 P4  6II 14 
6II O05 O8  O 0 1 N N N N N N 11.285 30.433 89.919 3.241  -1.732 1.331  O05 6II 15 
6II O06 O9  O 0 1 N N N N N N 10.741 32.078 88.071 1.464  -3.482 0.939  O06 6II 16 
6II O10 O10 O 0 1 N N N N N N 14.883 26.490 86.197 2.883  2.934  -0.978 O10 6II 17 
6II O09 O11 O 0 1 N N N N N N 13.163 28.329 86.140 1.953  1.125  0.518  O09 6II 18 
6II O07 O12 O 0 1 N N N N N N 13.074 31.138 88.280 3.318  -3.316 -0.766 O07 6II 19 
6II P3  P3  P 0 1 N N N N N N 11.597 30.912 88.516 2.351  -2.521 0.246  P3  6II 20 
6II C1  C6  C 0 1 N N S N N N 9.894  29.641 83.973 -1.999 -0.093 -0.063 C1  6II 21 
6II O2  O13 O 0 1 N N N N N N 9.197  31.057 85.800 -1.254 -2.365 -0.428 O2  6II 22 
6II O5  O14 O 0 1 N N N N N N 10.481 28.385 83.651 -1.628 1.275  -0.241 O5  6II 23 
6II O6  O15 O 0 1 N N N N N N 12.635 26.986 82.231 -1.139 3.906  0.810  O6  6II 24 
6II H1  H1  H 0 1 N N N N N N 9.161  28.986 85.876 -0.834 -0.814 -1.729 H1  6II 25 
6II H2  H2  H 0 1 N N N N N N 11.795 30.503 85.690 0.362  -0.913 1.080  H2  6II 26 
6II H3  H3  H 0 1 N N N N N N 11.227 27.530 86.071 0.855  1.024  -1.230 H3  6II 27 
6II H4  H4  H 0 1 N N N N N N 12.439 29.084 83.741 -0.493 1.449  1.477  H4  6II 28 
6II H5  H5  H 0 1 N N N N N N 11.666 26.149 83.850 0.847  3.381  0.589  H5  6II 29 
6II H6  H6  H 0 1 N N N N N N 13.332 26.744 84.159 -0.130 3.330  -0.898 H6  6II 30 
6II H7  H7  H 0 1 N N N N N N 6.838  29.051 80.894 -6.735 -0.312 -0.714 H7  6II 31 
6II H8  H8  H 0 1 N N N N N N 9.243  31.814 81.328 -4.744 -2.164 0.890  H8  6II 32 
6II H9  H9  H 0 1 N N N N N N 12.913 25.510 87.324 4.097  -0.217 -0.823 H9  6II 33 
6II H10 H10 H 0 1 N N N N N N 15.575 27.959 88.064 5.193  2.438  0.487  H10 6II 34 
6II H11 H11 H 0 1 N N N N N N 10.587 30.962 90.287 3.847  -1.084 0.947  H11 6II 35 
6II H12 H12 H 0 1 N N N N N N 13.205 31.992 87.885 3.887  -3.969 -0.335 H12 6II 36 
6II H13 H13 H 0 1 N N N N N N 10.523 30.455 83.583 -2.106 -0.305 1.001  H13 6II 37 
6II H14 H14 H 0 1 N N N N N N 9.657  31.444 86.536 -2.093 -2.634 -0.828 H14 6II 38 
6II H15 H15 H 0 1 N N N N N N 12.986 26.149 81.950 -1.025 4.860  0.702  H15 6II 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6II O04 P1  DOUB N N 1  
6II O03 P1  SING N N 2  
6II P1  O02 SING N N 3  
6II P1  O01 SING N N 4  
6II O6  C6  SING N N 5  
6II O01 C1  SING N N 6  
6II C6  C5  SING N N 7  
6II O5  C1  SING N N 8  
6II O5  C5  SING N N 9  
6II C1  C2  SING N N 10 
6II C5  C4  SING N N 11 
6II C2  O2  SING N N 12 
6II C2  C3  SING N N 13 
6II C4  C3  SING N N 14 
6II C4  O09 SING N N 15 
6II C3  O08 SING N N 16 
6II O09 P4  SING N N 17 
6II O10 P4  DOUB N N 18 
6II P4  O11 SING N N 19 
6II P4  O12 SING N N 20 
6II O08 P3  SING N N 21 
6II O06 P3  DOUB N N 22 
6II O07 P3  SING N N 23 
6II P3  O05 SING N N 24 
6II C2  H1  SING N N 25 
6II C3  H2  SING N N 26 
6II C4  H3  SING N N 27 
6II C5  H4  SING N N 28 
6II C6  H5  SING N N 29 
6II C6  H6  SING N N 30 
6II O03 H7  SING N N 31 
6II O02 H8  SING N N 32 
6II O11 H9  SING N N 33 
6II O12 H10 SING N N 34 
6II O05 H11 SING N N 35 
6II O07 H12 SING N N 36 
6II C1  H13 SING N N 37 
6II O2  H14 SING N N 38 
6II O6  H15 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6II InChI            InChI                1.06  "InChI=1S/C6H15O15P3/c7-1-2-4(19-22(9,10)11)5(20-23(12,13)14)3(8)6(18-2)21-24(15,16)17/h2-8H,1H2,(H2,9,10,11)(H2,12,13,14)(H2,15,16,17)/t2-,3-,4-,5-,6+/m1/s1" 
6II InChIKey         InChI                1.06  IXJMLEYTDGNHLU-UKFBFLRUSA-N                                                                                                                                    
6II SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](O[P](O)(O)=O)[C@H](O)[C@@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O"                                                                                 
6II SMILES           CACTVS               3.385 "OC[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O"                                                                                         
6II SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)O"                                                                                   
6II SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)O"                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           6II 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{R},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-5-oxidanyl-3,6-diphosphonooxy-oxan-4-yl] dihydrogen phosphate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      6II 
_pdbx_chem_comp_synonyms.name         "[(2R,3R,4R,5R,6S)-2-(hydroxymethyl)-5-oxidanyl-3,6-diphosphonooxy-oxan-4-yl] dihydrogen phosphate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6II "Create component" 2023-07-12 PDBE 
6II "Initial release"  2024-02-28 RCSB 
# 
