data_AXI
# 
_chem_comp.id                                    AXI 
_chem_comp.name                                  AXITINIB 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H18 N4 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "N-METHYL-2-(3-((E)-2-PYRIDIN-2-YL-VINYL)-1H-INDAZOL-6-YLSULFANYL)-BENZAMIDE" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-01-24 
_chem_comp.pdbx_modified_date                    2024-07-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.470 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AXI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4AG8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AXI O81  O81  O 0 1 N N N N N N 24.831 23.470 35.794 5.544  -1.258 -0.972 O81  AXI 1  
AXI C80  C80  C 0 1 N N N N N N 25.499 22.806 36.610 5.974  -0.233 -0.477 C80  AXI 2  
AXI N82  N82  N 0 1 N N N N N N 26.415 21.916 36.184 7.302  -0.010 -0.438 N82  AXI 3  
AXI C88  C88  C 0 1 N N N N N N 26.782 21.727 34.783 8.228  -1.002 -0.989 C88  AXI 4  
AXI C23  C23  C 0 1 Y N N N N N 25.292 23.032 38.066 5.041  0.767  0.072  C23  AXI 5  
AXI C22  C22  C 0 1 Y N N N N N 26.456 22.997 38.889 5.530  1.946  0.641  C22  AXI 6  
AXI C21  C21  C 0 1 Y N N N N N 26.409 23.200 40.291 4.654  2.877  1.153  C21  AXI 7  
AXI C20  C20  C 0 1 Y N N N N N 25.156 23.462 40.885 3.287  2.652  1.108  C20  AXI 8  
AXI C18  C18  C 0 1 Y N N N N N 24.018 23.298 38.674 3.656  0.545  0.023  C18  AXI 9  
AXI C19  C19  C 0 1 Y N N N N N 23.982 23.492 40.094 2.788  1.494  0.550  C19  AXI 10 
AXI S24  S24  S 0 1 N N N N N N 22.510 23.347 37.788 3.021  -0.933 -0.698 S24  AXI 11 
AXI C07  C07  C 0 1 Y N N N N N 21.489 24.548 38.526 1.293  -0.823 -0.370 C07  AXI 12 
AXI C08  C08  C 0 1 Y N N N N N 20.123 24.259 38.796 0.437  -0.290 -1.336 C08  AXI 13 
AXI C09  C09  C 0 1 Y N N N N N 19.257 25.239 39.392 -0.903 -0.198 -1.098 C09  AXI 14 
AXI C12  C12  C 0 1 Y N N N N N 22.020 25.832 38.865 0.794  -1.271 0.840  C12  AXI 15 
AXI C11  C11  C 0 1 Y N N N N N 21.178 26.775 39.450 -0.572 -1.184 1.096  C11  AXI 16 
AXI N15  N15  N 0 1 Y N N N N N 21.430 28.076 39.855 -1.356 -1.530 2.167  N15  AXI 17 
AXI N14  N14  N 0 1 Y N N N N N 20.339 28.597 40.306 -2.690 -1.216 1.886  N14  AXI 18 
AXI C13  C13  C 0 1 Y N N N N N 19.371 27.755 40.274 -2.781 -0.687 0.686  C13  AXI 19 
AXI C10  C10  C 0 1 Y N N N N N 19.844 26.504 39.711 -1.426 -0.640 0.119  C10  AXI 20 
AXI C16  C16  C 0 1 N N N N N N 18.018 28.134 40.713 -4.015 -0.227 0.030  C16  AXI 21 
AXI C17  C17  C 0 1 N N N N N N 16.885 27.325 40.808 -5.194 -0.329 0.668  C17  AXI 22 
AXI C02  C02  C 0 1 Y N N N N N 15.547 27.825 41.273 -6.429 0.131  0.011  C02  AXI 23 
AXI N03  N03  N 0 1 Y N N N N N 14.576 26.890 41.337 -6.372 0.648  -1.213 N03  AXI 24 
AXI C04  C04  C 0 1 Y N N N N N 13.319 27.223 41.745 -7.454 1.071  -1.834 C04  AXI 25 
AXI C05  C05  C 0 1 Y N N N N N 13.002 28.545 42.103 -8.696 0.993  -1.231 C05  AXI 26 
AXI C06  C06  C 0 1 Y N N N N N 14.004 29.530 42.041 -8.802 0.460  0.048  C06  AXI 27 
AXI C01  C01  C 0 1 Y N N N N N 15.312 29.179 41.616 -7.653 0.017  0.676  C01  AXI 28 
AXI H82  H82  H 0 1 N N N N N N 26.872 21.349 36.869 7.645  0.807  -0.043 H82  AXI 29 
AXI H881 H881 H 0 0 N N N N N N 27.550 20.943 34.707 8.104  -1.948 -0.462 H881 AXI 30 
AXI H882 H882 H 0 0 N N N N N N 25.893 21.427 34.209 8.017  -1.146 -2.049 H882 AXI 31 
AXI H883 H883 H 0 0 N N N N N N 27.179 22.669 34.378 9.253  -0.650 -0.868 H883 AXI 32 
AXI H22  H22  H 0 1 N N N N N N 27.413 22.808 38.425 6.595  2.127  0.679  H22  AXI 33 
AXI H21  H21  H 0 1 N N N N N N 27.308 23.155 40.888 5.034  3.788  1.593  H21  AXI 34 
AXI H20  H20  H 0 1 N N N N N N 25.092 23.641 41.948 2.608  3.389  1.512  H20  AXI 35 
AXI H19  H19  H 0 1 N N N N N N 23.031 23.666 40.575 1.721  1.326  0.520  H19  AXI 36 
AXI H08  H08  H 0 1 N N N N N N 19.729 23.284 38.548 0.839  0.052  -2.278 H08  AXI 37 
AXI H12  H12  H 0 1 N N N N N N 23.056 26.066 38.671 1.459  -1.686 1.582  H12  AXI 38 
AXI H09  H09  H 0 1 N N N N N N 18.216 25.031 39.589 -1.558 0.216  -1.850 H09  AXI 39 
AXI H16  H16  H 0 1 N N N N N N 17.886 29.168 40.997 -3.973 0.193  -0.964 H16  AXI 40 
AXI H17  H17  H 0 1 N N N N N N 16.975 26.285 40.533 -5.235 -0.750 1.661  H17  AXI 41 
AXI H01  H01  H 0 1 N N N N N N 16.099 29.917 41.556 -7.700 -0.406 1.668  H01  AXI 42 
AXI H04  H04  H 0 1 N N N N N N 12.556 26.461 41.794 -7.370 1.485  -2.828 H04  AXI 43 
AXI H05  H05  H 0 1 N N N N N N 12.002 28.801 42.421 -9.576 1.344  -1.749 H05  AXI 44 
AXI H06  H06  H 0 1 N N N N N N 13.779 30.550 42.316 -9.761 0.390  0.538  H06  AXI 45 
AXI H1   H1   H 0 1 N N N N N N 22.316 28.537 39.806 -1.036 -1.930 2.991  H1   AXI 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AXI O81 C80  DOUB N N 1  
AXI C80 N82  SING N N 2  
AXI C80 C23  SING N N 3  
AXI N82 C88  SING N N 4  
AXI C23 C22  SING Y N 5  
AXI C23 C18  DOUB Y N 6  
AXI C22 C21  DOUB Y N 7  
AXI C21 C20  SING Y N 8  
AXI C20 C19  DOUB Y N 9  
AXI C18 C19  SING Y N 10 
AXI C18 S24  SING N N 11 
AXI S24 C07  SING N N 12 
AXI C07 C08  SING Y N 13 
AXI C07 C12  DOUB Y N 14 
AXI C08 C09  DOUB Y N 15 
AXI C09 C10  SING Y N 16 
AXI C12 C11  SING Y N 17 
AXI C11 N15  SING Y N 18 
AXI C11 C10  DOUB Y N 19 
AXI N15 N14  SING Y N 20 
AXI N14 C13  DOUB Y N 21 
AXI C13 C10  SING Y N 22 
AXI C13 C16  SING N N 23 
AXI C16 C17  DOUB N E 24 
AXI C17 C02  SING N N 25 
AXI C02 N03  DOUB Y N 26 
AXI C02 C01  SING Y N 27 
AXI N03 C04  SING Y N 28 
AXI C04 C05  DOUB Y N 29 
AXI C05 C06  SING Y N 30 
AXI C06 C01  DOUB Y N 31 
AXI N82 H82  SING N N 32 
AXI C88 H881 SING N N 33 
AXI C88 H882 SING N N 34 
AXI C88 H883 SING N N 35 
AXI C22 H22  SING N N 36 
AXI C21 H21  SING N N 37 
AXI C20 H20  SING N N 38 
AXI C19 H19  SING N N 39 
AXI C08 H08  SING N N 40 
AXI C12 H12  SING N N 41 
AXI C09 H09  SING N N 42 
AXI C16 H16  SING N N 43 
AXI C17 H17  SING N N 44 
AXI C01 H01  SING N N 45 
AXI C04 H04  SING N N 46 
AXI C05 H05  SING N N 47 
AXI C06 H06  SING N N 48 
AXI N15 H1   SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AXI SMILES           ACDLabs              12.01 "O=C(NC)c4ccccc4Sc2ccc3c(\C=C\c1ncccc1)nnc3c2"                                                                                                     
AXI InChI            InChI                1.06  "InChI=1S/C22H18N4OS/c1-23-22(27)18-7-2-3-8-21(18)28-16-10-11-17-19(25-26-20(17)14-16)12-9-15-6-4-5-13-24-15/h2-14H,1H3,(H,23,27)(H,25,26)/b12-9+" 
AXI InChIKey         InChI                1.06  RITAVMQDGBJQJZ-FMIVXFBMSA-N                                                                                                                        
AXI SMILES_CANONICAL CACTVS               3.385 "CNC(=O)c1ccccc1Sc2ccc3c([nH]nc3\C=C\c4ccccn4)c2"                                                                                                  
AXI SMILES           CACTVS               3.385 "CNC(=O)c1ccccc1Sc2ccc3c([nH]nc3C=Cc4ccccn4)c2"                                                                                                    
AXI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1ccccc1Sc2ccc3c(c2)[nH]nc3/C=C/c4ccccn4"                                                                                                  
AXI SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1ccccc1Sc2ccc3c(c2)[nH]nc3C=Cc4ccccn4"                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AXI "SYSTEMATIC NAME" ACDLabs              12.01 "N-methyl-2-({3-[(E)-2-pyridin-2-ylethenyl]-2H-indazol-6-yl}sulfanyl)benzamide"          
AXI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-methyl-2-[[3-[(~{E})-2-pyridin-2-ylethenyl]-1~{H}-indazol-6-yl]sulfanyl]benzamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      AXI 
_pdbx_chem_comp_synonyms.name         "N-METHYL-2-(3-((E)-2-PYRIDIN-2-YL-VINYL)-1H-INDAZOL-6-YLSULFANYL)-BENZAMIDE" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AXI "Create component"   2012-01-24 EBI  
AXI "Initial release"    2012-09-21 RCSB 
AXI "Other modification" 2014-04-29 EBI  
AXI "Modify synonyms"    2021-03-01 PDBE 
AXI "Other modification" 2024-07-30 PDBE 
# 
