data_EII
# 
_chem_comp.id                                    EII 
_chem_comp.name                                  "3-(2-{3-[(2,4-diamino-6-cyclohexylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H30 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-18 
_chem_comp.pdbx_modified_date                    2024-08-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        414.498 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EII 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TA1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EII C15 C1  C 0 1 N N N N N N -1.220 -11.990 13.689 -0.960 1.041  0.209  C15 EII 1  
EII C11 C2  C 0 1 Y N N N N N -2.728 -13.080 17.386 3.813  1.262  -0.742 C11 EII 2  
EII C10 C3  C 0 1 Y N N N N N -1.820 -12.965 18.441 3.553  2.019  -1.875 C10 EII 3  
EII C13 C4  C 0 1 N N N N N N -0.931 -13.339 15.784 1.467  1.208  -0.359 C13 EII 4  
EII C14 C5  C 0 1 N N N N N N -0.741 -13.330 14.270 0.454  0.647  0.641  C14 EII 5  
EII C02 C6  C 0 1 N N N N N N -7.372 -13.043 15.491 5.569  -2.191 1.709  C02 EII 6  
EII C04 C7  C 0 1 N N N N N N -6.459 -12.666 16.646 5.283  -1.369 0.479  C04 EII 7  
EII C05 C8  C 0 1 N N N N N N -5.079 -13.167 16.446 5.406  0.118  0.820  C05 EII 8  
EII C06 C9  C 0 1 Y N N N N N -4.109 -13.017 17.594 5.121  0.941  -0.410 C06 EII 9  
EII C07 C10 C 0 1 Y N N N N N -4.560 -12.827 18.888 6.161  1.376  -1.208 C07 EII 10 
EII C08 C11 C 0 1 Y N N N N N -3.666 -12.715 19.985 5.900  2.131  -2.336 C08 EII 11 
EII C09 C12 C 0 1 Y N N N N N -2.302 -12.777 19.755 4.597  2.451  -2.670 C09 EII 12 
EII C17 C13 C 0 1 Y N N N N N -0.542 -9.708  13.704 -3.221 0.779  0.904  C17 EII 13 
EII C18 C14 C 0 1 Y N N N N N -0.184 -9.219  12.442 -3.829 1.929  1.423  C18 EII 14 
EII C21 C15 C 0 1 Y N N N N N -1.031 -7.144  13.004 -5.812 1.296  0.432  C21 EII 15 
EII C24 C16 C 0 1 Y N N N N N -1.143 -8.847  14.618 -3.987 -0.082 0.138  C24 EII 16 
EII C25 C17 C 0 1 N N N N N N -1.573 -9.256  16.021 -3.376 -1.330 -0.446 C25 EII 17 
EII C26 C18 C 0 1 N N N N N N -0.827 -8.474  17.095 -4.119 -2.558 0.085  C26 EII 18 
EII C27 C19 C 0 1 N N N N N N -1.326 -8.830  18.508 -3.499 -3.825 -0.508 C27 EII 19 
EII C28 C20 C 0 1 N N N N N N -2.817 -8.682  18.700 -3.612 -3.781 -2.033 C28 EII 20 
EII C29 C21 C 0 1 N N N N N N -3.582 -9.408  17.629 -2.870 -2.554 -2.565 C29 EII 21 
EII C30 C22 C 0 1 N N N N N N -3.103 -9.080  16.209 -3.489 -1.287 -1.972 C30 EII 22 
EII N19 N1  N 0 1 N N N N N N 0.422  -10.031 11.516 -3.100 2.825  2.192  N19 EII 23 
EII N20 N2  N 0 1 Y N N N N N -0.443 -7.936  12.061 -5.114 2.149  1.166  N20 EII 24 
EII N22 N3  N 0 1 N N N N N N -1.297 -5.840  12.647 -7.151 1.558  0.184  N22 EII 25 
EII N23 N4  N 0 1 Y N N N N N -1.387 -7.550  14.259 -5.264 0.204  -0.076 N23 EII 26 
EII O01 O1  O 0 1 N N N N N N -7.233 -12.417 14.395 5.842  -1.645 2.751  O01 EII 27 
EII O03 O2  O 0 1 N N N N N N -8.220 -13.975 15.641 5.519  -3.531 1.646  O03 EII 28 
EII O12 O3  O 0 1 N N N N N N -2.315 -13.280 16.091 2.788  0.840  0.044  O12 EII 29 
EII O16 O4  O 0 1 N N N N N N -0.246 -11.006 14.061 -1.907 0.517  1.143  O16 EII 30 
EII H1  H1  H 0 1 N N N N N N -2.203 -11.726 14.106 -1.042 2.127  0.180  H1  EII 31 
EII H2  H2  H 0 1 N N N N N N -1.292 -12.056 12.593 -1.164 0.634  -0.781 H2  EII 32 
EII H3  H3  H 0 1 N N N N N N -0.758 -13.019 18.253 2.536  2.270  -2.136 H3  EII 33 
EII H4  H4  H 0 1 N N N N N N -0.503 -14.262 16.201 1.263  0.801  -1.349 H4  EII 34 
EII H5  H5  H 0 1 N N N N N N -0.422 -12.468 16.222 1.385  2.294  -0.389 H5  EII 35 
EII H6  H6  H 0 1 N N N N N N -1.324 -14.150 13.825 0.658  1.054  1.632  H6  EII 36 
EII H7  H7  H 0 1 N N N N N N 0.325  -13.469 14.036 0.535  -0.439 0.671  H7  EII 37 
EII H8  H8  H 0 1 N N N N N N -6.430 -11.570 16.733 5.999  -1.622 -0.303 H8  EII 38 
EII H9  H9  H 0 1 N N N N N N -6.863 -13.097 17.574 4.273  -1.579 0.128  H9  EII 39 
EII H10 H10 H 0 1 N N N N N N -5.149 -14.239 16.212 4.690  0.372  1.601  H10 EII 40 
EII H11 H11 H 0 1 N N N N N N -4.655 -12.630 15.584 6.417  0.328  1.171  H11 EII 41 
EII H12 H12 H 0 1 N N N N N N -5.623 -12.762 19.069 7.180  1.126  -0.950 H12 EII 42 
EII H13 H13 H 0 1 N N N N N N -4.045 -12.583 20.988 6.715  2.470  -2.958 H13 EII 43 
EII H14 H14 H 0 1 N N N N N N -1.609 -12.682 20.578 4.396  3.041  -3.552 H14 EII 44 
EII H15 H15 H 0 1 N N N N N N -1.340 -10.323 16.152 -2.326 -1.388 -0.161 H15 EII 45 
EII H16 H16 H 0 1 N N N N N N 0.246  -8.708  17.026 -4.038 -2.588 1.172  H16 EII 46 
EII H17 H17 H 0 1 N N N N N N -0.979 -7.398  16.923 -5.169 -2.499 -0.200 H17 EII 47 
EII H18 H18 H 0 1 N N N N N N -1.055 -9.876  18.715 -2.449 -3.883 -0.223 H18 EII 48 
EII H19 H19 H 0 1 N N N N N N -0.819 -8.170  19.228 -4.028 -4.699 -0.129 H19 EII 49 
EII H20 H20 H 0 1 N N N N N N -3.078 -7.614  18.665 -3.170 -4.684 -2.456 H20 EII 50 
EII H21 H21 H 0 1 N N N N N N -3.094 -9.095  19.681 -4.662 -3.723 -2.318 H21 EII 51 
EII H22 H22 H 0 1 N N N N N N -4.644 -9.132  17.711 -1.819 -2.612 -2.280 H22 EII 52 
EII H23 H23 H 0 1 N N N N N N -3.470 -10.490 17.793 -2.950 -2.523 -3.651 H23 EII 53 
EII H24 H24 H 0 1 N N N N N N -3.364 -8.035  15.985 -4.540 -1.228 -2.257 H24 EII 54 
EII H25 H25 H 0 1 N N N N N N -3.620 -9.747  15.503 -2.961 -0.412 -2.351 H25 EII 55 
EII H26 H26 H 0 1 N N N N N N 0.580  -9.516  10.673 -2.163 2.657  2.374  H26 EII 56 
EII H27 H27 H 0 1 N N N N N N 1.297  -10.354 11.878 -3.529 3.619  2.547  H27 EII 57 
EII H28 H28 H 0 1 N N N N N N -0.998 -5.684  11.705 -7.673 0.943  -0.355 H28 EII 58 
EII H29 H29 H 0 1 N N N N N N -2.280 -5.669  12.717 -7.565 2.355  0.550  H29 EII 59 
EII H30 H30 H 0 1 N N N N N N -8.697 -14.103 14.829 5.709  -4.016 2.461  H30 EII 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EII N19 C18 SING N N 1  
EII N20 C18 DOUB Y N 2  
EII N20 C21 SING Y N 3  
EII C18 C17 SING Y N 4  
EII N22 C21 SING N N 5  
EII C21 N23 DOUB Y N 6  
EII C15 O16 SING N N 7  
EII C15 C14 SING N N 8  
EII C17 O16 SING N N 9  
EII C17 C24 DOUB Y N 10 
EII N23 C24 SING Y N 11 
EII C14 C13 SING N N 12 
EII O01 C02 DOUB N N 13 
EII C24 C25 SING N N 14 
EII C02 O03 SING N N 15 
EII C02 C04 SING N N 16 
EII C13 O12 SING N N 17 
EII C25 C30 SING N N 18 
EII C25 C26 SING N N 19 
EII O12 C11 SING N N 20 
EII C30 C29 SING N N 21 
EII C05 C04 SING N N 22 
EII C05 C06 SING N N 23 
EII C26 C27 SING N N 24 
EII C11 C06 DOUB Y N 25 
EII C11 C10 SING Y N 26 
EII C06 C07 SING Y N 27 
EII C29 C28 SING N N 28 
EII C10 C09 DOUB Y N 29 
EII C27 C28 SING N N 30 
EII C07 C08 DOUB Y N 31 
EII C09 C08 SING Y N 32 
EII C15 H1  SING N N 33 
EII C15 H2  SING N N 34 
EII C10 H3  SING N N 35 
EII C13 H4  SING N N 36 
EII C13 H5  SING N N 37 
EII C14 H6  SING N N 38 
EII C14 H7  SING N N 39 
EII C04 H8  SING N N 40 
EII C04 H9  SING N N 41 
EII C05 H10 SING N N 42 
EII C05 H11 SING N N 43 
EII C07 H12 SING N N 44 
EII C08 H13 SING N N 45 
EII C09 H14 SING N N 46 
EII C25 H15 SING N N 47 
EII C26 H16 SING N N 48 
EII C26 H17 SING N N 49 
EII C27 H18 SING N N 50 
EII C27 H19 SING N N 51 
EII C28 H20 SING N N 52 
EII C28 H21 SING N N 53 
EII C29 H22 SING N N 54 
EII C29 H23 SING N N 55 
EII C30 H24 SING N N 56 
EII C30 H25 SING N N 57 
EII N19 H26 SING N N 58 
EII N19 H27 SING N N 59 
EII N22 H28 SING N N 60 
EII N22 H29 SING N N 61 
EII O03 H30 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EII SMILES           ACDLabs              12.01 "Nc1nc(C2CCCCC2)c(OCCCOc2ccccc2CCC(=O)O)c(N)n1"                                                                                                                            
EII InChI            InChI                1.06  "InChI=1S/C22H30N4O4/c23-21-20(19(25-22(24)26-21)16-8-2-1-3-9-16)30-14-6-13-29-17-10-5-4-7-15(17)11-12-18(27)28/h4-5,7,10,16H,1-3,6,8-9,11-14H2,(H,27,28)(H4,23,24,25,26)" 
EII InChIKey         InChI                1.06  LMSJEWOKYLUOAL-UHFFFAOYSA-N                                                                                                                                                
EII SMILES_CANONICAL CACTVS               3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)C3CCCCC3"                                                                                                                            
EII SMILES           CACTVS               3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)C3CCCCC3"                                                                                                                            
EII SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)C3CCCCC3"                                                                                                                          
EII SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)C3CCCCC3"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EII "SYSTEMATIC NAME" ACDLabs              12.01 "3-(2-{3-[(2,4-diamino-6-cyclohexylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid"    
EII "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[3-[2,4-bis(azanyl)-6-cyclohexyl-pyrimidin-5-yl]oxypropoxy]phenyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EII "Create component" 2023-07-18 RCSB 
EII "Initial release"  2024-08-28 RCSB 
# 
