data_GII
#

_chem_comp.id                                   GII
_chem_comp.name                                 "(2R,3R,4R,5S)-1-[6-(4-azido-2-nitroanilino)hexyl]-2-(hydroxymethyl)piperidine-3,4,5-triol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H28 N6 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-12-24
_chem_comp.pdbx_modified_date                   2022-04-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       424.452
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GII
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7T68
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GII  N1   N1   N   0  1  N  N  N  -35.704  -30.453  -68.725   5.010   0.125  -0.069  N1   GII   1  
GII  N3   N2   N   1  1  N  N  N  -43.273  -25.506  -63.462  -5.865   2.453   0.561  N3   GII   2  
GII  C4   C1   C   0  1  N  N  N  -34.007  -28.754  -68.110   6.095   2.188  -0.820  C4   GII   3  
GII  C5   C2   C   0  1  N  N  N  -36.601  -29.817  -68.216   3.802   0.916   0.199  C5   GII   4  
GII  C6   C3   C   0  1  N  N  N  -36.898  -30.261  -66.673   2.563   0.056  -0.058  C6   GII   5  
GII  C7   C4   C   0  1  N  N  N  -37.707  -29.243  -65.842   1.304   0.880   0.221  C7   GII   6  
GII  C8   C5   C   0  1  N  N  N  -38.203  -29.788  -64.440   0.064   0.020  -0.036  C8   GII   7  
GII  C10  C6   C   0  1  N  N  N  -40.515  -28.648  -64.834  -2.434  -0.016  -0.014  C10  GII   8  
GII  C13  C7   C   0  1  Y  N  N  -44.740  -25.858  -65.520  -7.255   0.496   0.082  C13  GII   9  
GII  C15  C8   C   0  1  Y  N  N  -44.287  -27.668  -67.110  -6.169  -1.754  -0.375  C15  GII  10  
GII  C17  C9   C   0  1  N  N  N  -35.989  -31.890  -68.832   5.071  -1.056   0.801  C17  GII  11  
GII  C1   C10  C   0  1  N  N  R  -33.696  -32.403  -69.262   7.551  -1.115   0.520  C1   GII  12  
GII  C11  C11  C   0  1  Y  N  N  -42.844  -27.383  -65.116  -4.872   0.211   0.090  C11  GII  13  
GII  C12  C12  C   0  1  Y  N  N  -43.613  -26.265  -64.714  -6.018   1.017   0.236  C12  GII  14  
GII  C14  C13  C   0  1  Y  N  N  -45.078  -26.554  -66.716  -7.395  -0.940  -0.237  C14  GII  15  
GII  C16  C14  C   0  1  Y  N  N  -43.187  -28.086  -66.318  -4.966  -1.163  -0.207  C16  GII  16  
GII  C18  C15  C   0  1  N  N  S  -35.008  -32.490  -69.839   6.261  -1.929   0.396  C18  GII  17  
GII  C2   C16  C   0  1  N  N  R  -33.376  -30.987  -69.098   7.443   0.135  -0.359  C2   GII  18  
GII  C3   C17  C   0  1  N  N  R  -34.379  -30.292  -68.157   6.219   0.948   0.068  C3   GII  19  
GII  C9   C18  C   0  1  N  N  N  -39.372  -28.911  -63.820  -1.194   0.844   0.243  C9   GII  20  
GII  N2   N3   N   0  1  N  N  N  -41.642  -27.851  -64.270  -3.639   0.772   0.253  N2   GII  21  
GII  N4   N4   N   0  1  N  N  N  -46.226  -26.132  -67.554  -8.574  -1.478  -0.392  N4   GII  22  
GII  N5   N5   N   1  1  N  N  N  -47.271  -25.312  -67.049  -8.666  -2.572  -0.634  N5   GII  23  
GII  N6   N6   N  -1  1  N  N  N  -48.506  -25.543  -67.747  -8.757  -3.665  -0.876  N6   GII  24  
GII  O1   O1   O   0  1  N  N  N  -32.725  -33.137  -70.132   8.660  -1.906   0.090  O1   GII  25  
GII  O2   O2   O   0  1  N  N  N  -32.026  -30.844  -68.640   8.621   0.929  -0.205  O2   GII  26  
GII  O3   O3   O   0  1  N  N  N  -34.090  -28.233  -69.423   6.033   1.787  -2.191  O3   GII  27  
GII  O4   O4   O  -1  1  N  N  N  -42.451  -26.074  -62.461  -4.884   3.148   0.024  O4   GII  28  
GII  O5   O5   O   0  1  N  N  N  -43.751  -24.221  -63.251  -6.710   3.034   1.386  O5   GII  29  
GII  O6   O6   O   0  1  N  N  N  -35.298  -33.897  -70.087   6.331  -3.069   1.256  O6   GII  30  
GII  H2   H2   H   0  1  N  N  N  -32.984  -28.631  -67.726   5.188   2.733  -0.559  H2   GII  31  
GII  H3   H3   H   0  1  N  N  N  -34.711  -28.222  -67.454   6.962   2.831  -0.669  H3   GII  32  
GII  H4   H4   H   0  1  N  N  N  -36.327  -28.752  -68.228   3.806   1.244   1.239  H4   GII  33  
GII  H5   H5   H   0  1  N  N  N  -37.517  -29.967  -68.807   3.783   1.786  -0.457  H5   GII  34  
GII  H6   H6   H   0  1  N  N  N  -37.459  -31.207  -66.693   2.558  -0.273  -1.098  H6   GII  35  
GII  H7   H7   H   0  1  N  N  N  -35.932  -30.418  -66.172   2.581  -0.814   0.598  H7   GII  36  
GII  H8   H8   H   0  1  N  N  N  -37.072  -28.363  -65.664   1.308   1.208   1.260  H8   GII  37  
GII  H9   H9   H   0  1  N  N  N  -38.590  -28.946  -66.427   1.285   1.750  -0.435  H9   GII  38  
GII  H10  H10  H   0  1  N  N  N  -38.567  -30.818  -64.572   0.060  -0.309  -1.076  H10  GII  39  
GII  H11  H11  H   0  1  N  N  N  -37.353  -29.786  -63.741   0.083  -0.850   0.620  H11  GII  40  
GII  H12  H12  H   0  1  N  N  N  -40.910  -29.617  -65.172  -2.438  -0.345  -1.054  H12  GII  41  
GII  H13  H13  H   0  1  N  N  N  -40.099  -28.102  -65.693  -2.415  -0.886   0.642  H13  GII  42  
GII  H14  H14  H   0  1  N  N  N  -45.336  -25.012  -65.211  -8.129   1.120   0.195  H14  GII  43  
GII  H15  H15  H   0  1  N  N  N  -44.526  -28.200  -68.019  -6.234  -2.806  -0.607  H15  GII  44  
GII  H16  H16  H   0  1  N  N  N  -37.021  -32.041  -69.180   5.189  -0.739   1.837  H16  GII  45  
GII  H17  H17  H   0  1  N  N  N  -35.859  -32.371  -67.851   4.149  -1.629   0.700  H17  GII  46  
GII  H18  H18  H   0  1  N  N  N  -33.705  -32.882  -68.272   7.696  -0.818   1.559  H18  GII  47  
GII  H19  H19  H   0  1  N  N  N  -42.602  -28.941  -66.623  -4.065  -1.750  -0.306  H19  GII  48  
GII  H20  H20  H   0  1  N  N  N  -35.056  -31.919  -70.778   6.136  -2.259  -0.636  H20  GII  49  
GII  H21  H21  H   0  1  N  N  N  -33.464  -30.501  -70.081   7.338  -0.162  -1.402  H21  GII  50  
GII  H22  H22  H   0  1  N  N  N  -34.316  -30.721  -67.146   6.332   1.256   1.108  H22  GII  51  
GII  H23  H23  H   0  1  N  N  N  -38.956  -27.945  -63.498  -1.190   1.172   1.283  H23  GII  52  
GII  H24  H24  H   0  1  N  N  N  -39.787  -29.440  -62.949  -1.213   1.714  -0.413  H24  GII  53  
GII  H25  H25  H   0  1  N  N  N  -41.231  -27.021  -63.892  -3.561   1.694   0.547  H25  GII  54  
GII  H30  H30  H   0  1  N  N  N  -31.855  -33.082  -69.753   8.789  -2.716   0.603  H30  GII  55  
GII  H31  H31  H   0  1  N  N  N  -31.823  -29.922  -68.535   9.437   0.475  -0.455  H31  GII  56  
GII  H32  H32  H   0  1  N  N  N  -33.869  -27.309  -69.412   5.953   2.523  -2.812  H32  GII  57  
GII  H33  H33  H   0  1  N  N  N  -36.164  -33.980  -70.470   5.545  -3.631   1.228  H33  GII  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GII  O1   C1   SING  N  N   1  
GII  O6   C18  SING  N  N   2  
GII  C18  C1   SING  N  N   3  
GII  C18  C17  SING  N  N   4  
GII  O3   C4   SING  N  N   5  
GII  C1   C2   SING  N  N   6  
GII  C2   O2   SING  N  N   7  
GII  C2   C3   SING  N  N   8  
GII  C17  N1   SING  N  N   9  
GII  N1   C5   SING  N  N  10  
GII  N1   C3   SING  N  N  11  
GII  C5   C6   SING  N  N  12  
GII  C3   C4   SING  N  N  13  
GII  N6   N5   DOUB  N  N  14  
GII  N4   N5   DOUB  N  N  15  
GII  N4   C14  SING  N  N  16  
GII  C15  C14  DOUB  Y  N  17  
GII  C15  C16  SING  Y  N  18  
GII  C14  C13  SING  Y  N  19  
GII  C6   C7   SING  N  N  20  
GII  C16  C11  DOUB  Y  N  21  
GII  C7   C8   SING  N  N  22  
GII  C13  C12  DOUB  Y  N  23  
GII  C11  C12  SING  Y  N  24  
GII  C11  N2   SING  N  N  25  
GII  C10  N2   SING  N  N  26  
GII  C10  C9   SING  N  N  27  
GII  C12  N3   SING  N  N  28  
GII  C8   C9   SING  N  N  29  
GII  N3   O5   DOUB  N  N  30  
GII  N3   O4   SING  N  N  31  
GII  C4   H2   SING  N  N  32  
GII  C4   H3   SING  N  N  33  
GII  C5   H4   SING  N  N  34  
GII  C5   H5   SING  N  N  35  
GII  C6   H6   SING  N  N  36  
GII  C6   H7   SING  N  N  37  
GII  C7   H8   SING  N  N  38  
GII  C7   H9   SING  N  N  39  
GII  C8   H10  SING  N  N  40  
GII  C8   H11  SING  N  N  41  
GII  C10  H12  SING  N  N  42  
GII  C10  H13  SING  N  N  43  
GII  C13  H14  SING  N  N  44  
GII  C15  H15  SING  N  N  45  
GII  C17  H16  SING  N  N  46  
GII  C17  H17  SING  N  N  47  
GII  C1   H18  SING  N  N  48  
GII  C16  H19  SING  N  N  49  
GII  C18  H20  SING  N  N  50  
GII  C2   H21  SING  N  N  51  
GII  C3   H22  SING  N  N  52  
GII  C9   H23  SING  N  N  53  
GII  C9   H24  SING  N  N  54  
GII  N2   H25  SING  N  N  55  
GII  O1   H30  SING  N  N  56  
GII  O2   H31  SING  N  N  57  
GII  O3   H32  SING  N  N  58  
GII  O6   H33  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GII  SMILES            ACDLabs               12.01  "[O-][N+](=O)c1cc(\N=[N+]=[N-])ccc1NCCCCCCN1CC(O)C(O)C(O)C1CO"  
GII  InChI             InChI                 1.03   "InChI=1S/C18H28N6O6/c19-22-21-12-5-6-13(14(9-12)24(29)30)20-7-3-1-2-4-8-23-10-16(26)18(28)17(27)15(23)11-25/h5-6,9,15-18,20,25-28H,1-4,7-8,10-11H2/t15-,16+,17-,18-/m1/s1"  
GII  InChIKey          InChI                 1.03   WSZFAXCTHDAHNX-XMTFNYHQSA-N  
GII  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCCCCCNc2ccc(cc2[N+]([O-])=O)N=[N+]=[N-]"  
GII  SMILES            CACTVS                3.385  "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCCCCCNc2ccc(cc2[N+]([O-])=O)N=[N+]=[N-]"  
GII  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N=[N+]=[N-])[N+](=O)[O-])NCCCCCCN2C[C@@H]([C@H]([C@@H]([C@H]2CO)O)O)O"  
GII  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N=[N+]=[N-])[N+](=O)[O-])NCCCCCCN2CC(C(C(C2CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GII  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,3R,4R,5S)-1-[6-(4-azido-2-nitroanilino)hexyl]-2-(hydroxymethyl)piperidine-3,4,5-triol"  
GII  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{R},4~{R},5~{S})-1-[6-[(4-azido-2-nitro-phenyl)amino]hexyl]-2-(hydroxymethyl)piperidine-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GII  "Create component"  2021-12-24  RCSB  
GII  "Initial release"   2022-05-04  RCSB  
##
