data_IXI
# 
_chem_comp.id                                    IXI 
_chem_comp.name                                  "5-[(3,6-dimethylpyridine-2-carbonyl)amino]-N-methyl-2-phenyl-1H-benzimidazole-6-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H21 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-01 
_chem_comp.pdbx_modified_date                    2022-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        399.445 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IXI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SGJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IXI N3  N1  N 0 1 Y N N 92.760 -7.012  14.993 4.625  0.419  0.595  N3  IXI 1  
IXI C4  C1  C 0 1 Y N N 92.033 -8.200  15.034 3.812  1.262  -0.029 C4  IXI 2  
IXI C5  C2  C 0 1 Y N N 91.158 -8.513  16.093 4.313  2.413  -0.634 C5  IXI 3  
IXI C6  C3  C 0 1 Y N N 91.021 -7.537  17.123 5.675  2.666  -0.575 C6  IXI 4  
IXI C7  C4  C 0 1 N N N 90.433 -9.822  16.108 3.389  3.369  -1.343 C7  IXI 5  
IXI C8  C5  C 0 1 N N N 93.377 -4.758  15.978 6.800  -0.354 1.387  C8  IXI 6  
IXI C10 C6  C 0 1 Y N N 95.475 -9.820  11.993 0.139  -1.824 -0.016 C10 IXI 7  
IXI C13 C7  C 0 1 Y N N 93.850 -11.489 10.411 -1.777 0.181  0.245  C13 IXI 8  
IXI C22 C8  C 0 1 N N N 98.543 -7.627  13.252 1.806  -5.173 -0.662 C22 IXI 9  
IXI C24 C9  C 0 1 Y N N 92.957 -13.865 7.066  -5.645 1.969  0.335  C24 IXI 10 
IXI C26 C10 C 0 1 Y N N 93.888 -15.245 5.386  -7.981 1.496  0.100  C26 IXI 11 
IXI C28 C11 C 0 1 Y N N 95.438 -14.151 6.947  -6.391 -0.281 -0.122 C28 IXI 12 
IXI C1  C12 C 0 1 Y N N 91.725 -6.321  17.076 6.487  1.759  0.087  C1  IXI 13 
IXI C2  C13 C 0 1 Y N N 92.616 -6.064  15.990 5.920  0.635  0.666  C2  IXI 14 
IXI C9  C14 C 0 1 Y N N 94.020 -9.954  12.256 0.530  -0.500 0.255  C9  IXI 15 
IXI C11 C15 C 0 1 Y N N 96.086 -10.507 10.930 -1.213 -2.138 -0.156 C11 IXI 16 
IXI C12 C16 C 0 1 Y N N 93.209 -10.797 11.456 -0.420 0.493  0.384  C12 IXI 17 
IXI C14 C17 C 0 1 Y N N 95.298 -11.343 10.159 -2.167 -1.147 -0.021 C14 IXI 18 
IXI N15 N2  N 0 1 Y N N 95.620 -12.156 9.064  -3.549 -1.132 -0.103 N15 IXI 19 
IXI C16 C18 C 0 1 Y N N 94.382 -12.749 8.695  -3.949 0.158  0.108  C16 IXI 20 
IXI N17 N3  N 0 1 Y N N 93.315 -12.401 9.465  -2.902 0.921  0.312  N17 IXI 21 
IXI N18 N4  N 0 1 N N N 93.443 -9.216  13.319 1.883  -0.189 0.395  N18 IXI 22 
IXI C19 C19 C 0 1 N N N 96.361 -8.802  12.745 1.158  -2.878 -0.159 C19 IXI 23 
IXI N20 N5  N 0 1 N N N 97.793 -8.761  12.695 0.792  -4.124 -0.520 N20 IXI 24 
IXI O21 O1  O 0 1 N N N 95.755 -7.790  13.260 2.329  -2.624 0.049  O21 IXI 25 
IXI C23 C20 C 0 1 Y N N 94.278 -13.638 7.557  -5.353 0.623  0.108  C23 IXI 26 
IXI C25 C21 C 0 1 Y N N 92.750 -14.687 5.968  -6.957 2.396  0.333  C25 IXI 27 
IXI C27 C22 C 0 1 Y N N 95.197 -14.997 5.864  -7.698 0.161  -0.132 C27 IXI 28 
IXI C29 C23 C 0 1 N N N 92.212 -9.301  13.965 2.359  0.978  -0.083 C29 IXI 29 
IXI O30 O2  O 0 1 N N N 91.370 -10.213 13.781 1.597  1.796  -0.559 O30 IXI 30 
IXI H1  H1  H 0 1 N N N 90.363 -7.736  17.956 6.093  3.549  -1.034 H1  IXI 31 
IXI H2  H2  H 0 1 N N N 91.043 -10.574 16.630 2.930  4.038  -0.614 H2  IXI 32 
IXI H3  H3  H 0 1 N N N 89.472 -9.703  16.630 3.956  3.954  -2.067 H3  IXI 33 
IXI H4  H4  H 0 1 N N N 90.250 -10.152 15.075 2.611  2.806  -1.859 H4  IXI 34 
IXI H5  H5  H 0 1 N N N 94.019 -4.715  15.086 6.877  -0.074 2.437  H5  IXI 35 
IXI H6  H6  H 0 1 N N N 92.665 -3.919  15.958 6.366  -1.351 1.308  H6  IXI 36 
IXI H7  H7  H 0 1 N N N 94.000 -4.689  16.882 7.793  -0.353 0.936  H7  IXI 37 
IXI H8  H8  H 0 1 N N N 99.621 -7.795  13.110 1.325  -6.105 -0.957 H8  IXI 38 
IXI H9  H9  H 0 1 N N N 98.245 -6.702  12.737 2.528  -4.879 -1.424 H9  IXI 39 
IXI H10 H10 H 0 1 N N N 98.324 -7.535  14.326 2.319  -5.314 0.290  H10 IXI 40 
IXI H11 H11 H 0 1 N N N 92.115 -13.395 7.552  -4.847 2.672  0.518  H11 IXI 41 
IXI H12 H12 H 0 1 N N N 93.765 -15.895 4.533  -9.006 1.837  0.090  H12 IXI 42 
IXI H13 H13 H 0 1 N N N 96.433 -13.910 7.289  -6.171 -1.324 -0.299 H13 IXI 43 
IXI H14 H14 H 0 1 N N N 91.593 -5.586  17.856 7.552  1.927  0.152  H14 IXI 44 
IXI H15 H15 H 0 1 N N N 97.139 -10.386 10.721 -1.514 -3.153 -0.369 H15 IXI 45 
IXI H16 H16 H 0 1 N N N 92.150 -10.903 11.639 -0.116 1.508  0.592  H16 IXI 46 
IXI H17 H17 H 0 1 N N N 96.516 -12.289 8.639  -4.124 -1.893 -0.277 H17 IXI 47 
IXI H19 H19 H 0 1 N N N 94.035 -8.493  13.675 2.481  -0.812 0.836  H19 IXI 48 
IXI H20 H20 H 0 1 N N N 98.291 -9.519  12.273 -0.142 -4.327 -0.685 H20 IXI 49 
IXI H21 H21 H 0 1 N N N 91.760 -14.884 5.584  -7.185 3.436  0.513  H21 IXI 50 
IXI H22 H22 H 0 1 N N N 96.033 -15.476 5.377  -8.501 -0.535 -0.321 H22 IXI 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IXI C1  C2  DOUB Y N 1  
IXI C1  C6  SING Y N 2  
IXI C2  N3  SING Y N 3  
IXI C2  C8  SING N N 4  
IXI N3  C4  DOUB Y N 5  
IXI C4  C5  SING Y N 6  
IXI C4  C29 SING N N 7  
IXI C5  C6  DOUB Y N 8  
IXI C5  C7  SING N N 9  
IXI C9  C10 DOUB Y N 10 
IXI C9  C12 SING Y N 11 
IXI C9  N18 SING N N 12 
IXI C10 C11 SING Y N 13 
IXI C10 C19 SING N N 14 
IXI C11 C14 DOUB Y N 15 
IXI C12 C13 DOUB Y N 16 
IXI C13 C14 SING Y N 17 
IXI C13 N17 SING Y N 18 
IXI C14 N15 SING Y N 19 
IXI N15 C16 SING Y N 20 
IXI C16 N17 DOUB Y N 21 
IXI C16 C23 SING N N 22 
IXI N18 C29 SING N N 23 
IXI C19 N20 SING N N 24 
IXI C19 O21 DOUB N N 25 
IXI N20 C22 SING N N 26 
IXI C23 C24 DOUB Y N 27 
IXI C23 C28 SING Y N 28 
IXI C24 C25 SING Y N 29 
IXI C25 C26 DOUB Y N 30 
IXI C26 C27 SING Y N 31 
IXI C27 C28 DOUB Y N 32 
IXI C29 O30 DOUB N N 33 
IXI C6  H1  SING N N 34 
IXI C7  H2  SING N N 35 
IXI C7  H3  SING N N 36 
IXI C7  H4  SING N N 37 
IXI C8  H5  SING N N 38 
IXI C8  H6  SING N N 39 
IXI C8  H7  SING N N 40 
IXI C22 H8  SING N N 41 
IXI C22 H9  SING N N 42 
IXI C22 H10 SING N N 43 
IXI C24 H11 SING N N 44 
IXI C26 H12 SING N N 45 
IXI C28 H13 SING N N 46 
IXI C1  H14 SING N N 47 
IXI C11 H15 SING N N 48 
IXI C12 H16 SING N N 49 
IXI N15 H17 SING N N 50 
IXI N18 H19 SING N N 51 
IXI N20 H20 SING N N 52 
IXI C25 H21 SING N N 53 
IXI C27 H22 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IXI SMILES           ACDLabs              12.01 "Cc1ccc(C)nc1C(=O)Nc1cc2nc([NH]c2cc1C(=O)NC)c1ccccc1"                                                                                                        
IXI InChI            InChI                1.03  "InChI=1S/C23H21N5O2/c1-13-9-10-14(2)25-20(13)23(30)28-17-12-19-18(11-16(17)22(29)24-3)26-21(27-19)15-7-5-4-6-8-15/h4-12H,1-3H3,(H,24,29)(H,26,27)(H,28,30)" 
IXI InChIKey         InChI                1.03  XIXHZOISHHEUGW-UHFFFAOYSA-N                                                                                                                                  
IXI SMILES_CANONICAL CACTVS               3.385 "CNC(=O)c1cc2[nH]c(nc2cc1NC(=O)c3nc(C)ccc3C)c4ccccc4"                                                                                                        
IXI SMILES           CACTVS               3.385 "CNC(=O)c1cc2[nH]c(nc2cc1NC(=O)c3nc(C)ccc3C)c4ccccc4"                                                                                                        
IXI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(nc1C(=O)Nc2cc3c(cc2C(=O)NC)[nH]c(n3)c4ccccc4)C"                                                                                                      
IXI SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccc(nc1C(=O)Nc2cc3c(cc2C(=O)NC)[nH]c(n3)c4ccccc4)C"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
IXI "SYSTEMATIC NAME" ACDLabs              12.01 "5-[(3,6-dimethylpyridine-2-carbonyl)amino]-N-methyl-2-phenyl-1H-benzimidazole-6-carboxamide"        
IXI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[(3,6-dimethylpyridin-2-yl)carbonylamino]-~{N}-methyl-2-phenyl-3~{H}-benzimidazole-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IXI "Create component" 2022-02-01 RCSB 
IXI "Initial release"  2022-10-12 RCSB 
# 
