data_SSI
#

_chem_comp.id                                   SSI
_chem_comp.name                                 "[(3S)-4-hydroxy-3-{[(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]amino}butyl]phosphonic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H17 N4 O5 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "S-SerMe-ImmH phosphonate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-09-27
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       316.250
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SSI
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3OZG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SSI  P       P       P  0  1  N  N  N  112.511  75.076  26.449  -3.902  -1.382   0.155  P       SSI   1  
SSI  N1      N1      N  0  1  N  N  N  106.052  68.610  25.159   4.011  -2.373  -0.124  N1      SSI   2  
SSI  C2      C2      C  0  1  N  N  N  105.454  69.294  26.179   2.817  -2.334  -0.771  C2      SSI   3  
SSI  N3      N3      N  0  1  N  N  N  105.972  70.427  26.675   2.147  -1.229  -0.921  N3      SSI   4  
SSI  C4      C4      C  0  1  Y  N  N  107.131  70.897  26.132   2.617  -0.057  -0.431  C4      SSI   5  
SSI  C5      C5      C  0  1  Y  N  N  107.824  70.236  25.024   3.842  -0.036   0.244  C5      SSI   6  
SSI  C6      C6      C  0  1  N  N  N  107.188  68.995  24.545   4.546  -1.248   0.398  C6      SSI   7  
SSI  O6      O6      O  0  1  N  N  N  107.693  68.352  23.597   5.618  -1.278   0.980  O6      SSI   8  
SSI  N7      N7      N  0  1  Y  N  N  108.910  70.970  24.711   4.076   1.263   0.629  N7      SSI   9  
SSI  C8      C8      C  0  1  Y  N  N  108.990  72.055  25.506   3.038   2.038   0.211  C8      SSI  10  
SSI  C9      C9      C  0  1  Y  N  N  107.942  72.098  26.420   2.136   1.270  -0.434  C9      SSI  11  
SSI  "C1'"   "C1'"   C  0  1  N  N  N  107.674  73.181  27.425   0.845   1.745  -1.049  "C1'"   SSI  12  
SSI  O1P     O1P     O  0  1  N  N  N  112.343  76.436  27.093  -3.823  -2.887  -0.410  O1P     SSI  13  
SSI  O2P     O2P     O  0  1  N  N  N  111.662  74.936  25.202  -5.199  -0.779  -0.225  O2P     SSI  14  
SSI  "C3'"   "C3'"   C  0  1  N  N  N  110.025  73.687  30.252  -1.763   3.369  -0.375  "C3'"   SSI  15  
SSI  "O3'"   "O3'"   O  0  1  N  N  N  109.629  72.593  31.048  -1.902   3.523   1.039  "O3'"   SSI  16  
SSI  O3P     O3P     O  0  1  N  N  N  113.906  74.562  26.214  -3.771  -1.403   1.760  O3P     SSI  17  
SSI  "C4'"   "C4'"   C  0  1  N  N  S  109.760  73.178  28.826  -1.548   1.892  -0.709  "C4'"   SSI  18  
SSI  "N4'"   "N4'"   N  0  1  N  N  N  108.328  72.984  28.678  -0.270   1.442  -0.141  "N4'"   SSI  19  
SSI  "C5'"   "C5'"   C  0  1  N  N  N  110.327  74.162  27.821  -2.689   1.064  -0.115  "C5'"   SSI  20  
SSI  "C6'"   "C6'"   C  0  1  N  N  N  111.831  73.948  27.678  -2.543  -0.395  -0.552  "C6'"   SSI  21  
SSI  HN1     HN1     H  0  1  N  N  N  105.617  67.766  24.846   4.481  -3.217  -0.033  HN1     SSI  22  
SSI  H2      H2      H  0  1  N  N  N  104.536  68.910  26.599   2.411  -3.250  -1.175  H2      SSI  23  
SSI  H8      H8      H  0  1  N  N  N  109.771  72.799  25.442   2.949   3.102   0.372  H8      SSI  24  
SSI  "H1'"   "H1'"   H  0  1  N  N  N  108.029  74.132  27.002   0.895   2.820  -1.217  "H1'"   SSI  25  
SSI  "H1'A"  "H1'A"  H  0  0  N  N  N  106.590  73.213  27.609   0.686   1.236  -2.000  "H1'A"  SSI  26  
SSI  HO1P    HO1P    H  0  0  N  N  N  111.728  76.953  26.586  -4.518  -3.470  -0.074  HO1P    SSI  27  
SSI  "H3'"   "H3'"   H  0  1  N  N  N  111.084  73.942  30.405  -2.666   3.726  -0.870  "H3'"   SSI  28  
SSI  "H3'A"  "H3'A"  H  0  0  N  N  N  109.440  74.591  30.479  -0.906   3.948  -0.721  "H3'A"  SSI  29  
SSI  "HO3'"  "HO3'"  H  0  0  N  N  N  109.754  72.806  31.965  -2.042   4.437   1.323  "HO3'"  SSI  30  
SSI  HO3P    HO3P    H  0  0  N  N  N  113.982  74.247  25.321  -2.943  -1.786   2.082  HO3P    SSI  31  
SSI  "H4'"   "H4'"   H  0  1  N  N  N  110.260  72.216  28.641  -1.531   1.763  -1.791  "H4'"   SSI  32  
SSI  "HN4'"  "HN4'"  H  0  0  N  N  N  107.902  73.632  29.309  -0.299   0.459   0.081  "HN4'"  SSI  33  
SSI  "H5'"   "H5'"   H  0  1  N  N  N  109.843  74.007  26.846  -2.652   1.122   0.973  "H5'"   SSI  34  
SSI  "H5'A"  "H5'A"  H  0  0  N  N  N  110.136  75.188  28.168  -3.644   1.455  -0.467  "H5'A"  SSI  35  
SSI  "H6'"   "H6'"   H  0  1  N  N  N  112.020  72.912  27.361  -1.588  -0.786  -0.200  "H6'"   SSI  36  
SSI  "H6'A"  "H6'A"  H  0  0  N  N  N  112.316  74.135  28.647  -2.579  -0.453  -1.640  "H6'A"  SSI  37  
SSI  HN7     HN7     H  0  1  N  N  N  109.564  70.742  23.990   4.854   1.577   1.117  HN7     SSI  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SSI  O2P    P       DOUB  N  N   1  
SSI  O3P    P       SING  N  N   2  
SSI  P      O1P     SING  N  N   3  
SSI  P      "C6'"   SING  N  N   4  
SSI  C6     N1      SING  N  N   5  
SSI  N1     C2      SING  N  N   6  
SSI  N1     HN1     SING  N  N   7  
SSI  C2     N3      DOUB  N  N   8  
SSI  C2     H2      SING  N  N   9  
SSI  C4     N3      SING  N  N  10  
SSI  C5     C4      DOUB  Y  N  11  
SSI  C4     C9      SING  Y  N  12  
SSI  C6     C5      SING  N  N  13  
SSI  N7     C5      SING  Y  N  14  
SSI  O6     C6      DOUB  N  N  15  
SSI  N7     C8      SING  Y  N  16  
SSI  C8     C9      DOUB  Y  N  17  
SSI  C8     H8      SING  N  N  18  
SSI  C9     "C1'"   SING  N  N  19  
SSI  "C1'"  "N4'"   SING  N  N  20  
SSI  "C1'"  "H1'"   SING  N  N  21  
SSI  "C1'"  "H1'A"  SING  N  N  22  
SSI  O1P    HO1P    SING  N  N  23  
SSI  "C4'"  "C3'"   SING  N  N  24  
SSI  "C3'"  "O3'"   SING  N  N  25  
SSI  "C3'"  "H3'"   SING  N  N  26  
SSI  "C3'"  "H3'A"  SING  N  N  27  
SSI  "O3'"  "HO3'"  SING  N  N  28  
SSI  O3P    HO3P    SING  N  N  29  
SSI  "C5'"  "C4'"   SING  N  N  30  
SSI  "N4'"  "C4'"   SING  N  N  31  
SSI  "C4'"  "H4'"   SING  N  N  32  
SSI  "N4'"  "HN4'"  SING  N  N  33  
SSI  "C6'"  "C5'"   SING  N  N  34  
SSI  "C5'"  "H5'"   SING  N  N  35  
SSI  "C5'"  "H5'A"  SING  N  N  36  
SSI  "C6'"  "H6'"   SING  N  N  37  
SSI  "C6'"  "H6'A"  SING  N  N  38  
SSI  N7     HN7     SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SSI  SMILES            ACDLabs               12.01  "O=P(O)(O)CCC(NCc2c1N=CNC(=O)c1nc2)CO"  
SSI  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H](CC[P](O)(O)=O)NCc1c[nH]c2C(=O)NC=Nc12"  
SSI  SMILES            CACTVS                3.370  "OC[CH](CC[P](O)(O)=O)NCc1c[nH]c2C(=O)NC=Nc12"  
SSI  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1c(c2c([nH]1)C(=O)NC=N2)CN[C@@H](CCP(=O)(O)O)CO"  
SSI  SMILES            "OpenEye OEToolkits"  1.7.0  "c1c(c2c([nH]1)C(=O)NC=N2)CNC(CCP(=O)(O)O)CO"  
SSI  InChI             InChI                 1.03   "InChI=1S/C11H17N4O5P/c16-5-8(1-2-21(18,19)20)12-3-7-4-13-10-9(7)14-6-15-11(10)17/h4,6,8,12-13,16H,1-3,5H2,(H,14,15,17)(H2,18,19,20)/t8-/m0/s1"  
SSI  InChIKey          InChI                 1.03   YYXVNWBGVIIBOW-QMMMGPOBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SSI  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(3S)-4-hydroxy-3-{[(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]amino}butyl]phosphonic acid"  
SSI  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "[(3S)-4-hydroxy-3-[(4-oxo-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)methylamino]butyl]phosphonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SSI  "Create component"      2010-09-27  RCSB  
SSI  "Modify aromatic_flag"  2011-06-04  RCSB  
SSI  "Modify descriptor"     2011-06-04  RCSB  
SSI  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SSI
_pdbx_chem_comp_synonyms.name        "S-SerMe-ImmH phosphonate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
