data_TDI
#

_chem_comp.id                                   TDI
_chem_comp.name                                 "(3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-[(METHYLSULFANYL)METHYL]PYRROLIDIN-3-OL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H19 N5 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(3R,4S)-1-[9-DEAZAADENIN-9-YL)METHYL]-3-HYDROXY-4-(METHYLTHIOMETHYL)PYRROLIDINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-12-13
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       293.388
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TDI
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1Y6Q
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TDI  C2      C2    C  0  1  Y  N  N  53.790  75.119  21.033   3.569   1.913   0.421  C2      TDI   1  
TDI  C4      C4    C  0  1  Y  N  N  55.679  74.355  19.843   2.493  -0.120   0.387  C4      TDI   2  
TDI  C5      C5    C  0  1  Y  N  N  54.877  74.090  18.701   3.637  -0.705  -0.184  C5      TDI   3  
TDI  C6      C6    C  0  1  Y  N  N  53.497  74.366  18.796   4.742   0.116  -0.436  C6      TDI   4  
TDI  CS5     CS5   C  0  1  N  N  N  56.570  68.203  23.222  -6.572  -0.838  -1.052  CS5     TDI   5  
TDI  S       S     S  0  1  N  N  N  55.708  69.777  23.563  -5.328  -0.628   0.251  S       TDI   6  
TDI  "C5'"   C5*   C  0  1  N  N  N  56.913  70.567  22.496  -4.078   0.322  -0.657  "C5'"   TDI   7  
TDI  "C4'"   C4*   C  0  1  N  N  S  58.251  71.265  22.340  -2.897   0.626   0.267  "C4'"   TDI   8  
TDI  "C1'"   C1*   C  0  1  N  N  N  58.578  72.050  21.066  -2.145  -0.672   0.617  "C1'"   TDI   9  
TDI  "N1'"   N1*   N  0  1  N  N  N  58.843  73.448  21.530  -0.771  -0.534   0.086  "N1'"   TDI  10  
TDI  C10     C10   C  0  1  N  N  N  58.245  74.061  20.335   0.133  -1.081   1.107  C10     TDI  11  
TDI  C9      C9    C  0  1  Y  N  N  57.026  73.974  19.456   1.522  -1.199   0.536  C9      TDI  12  
TDI  C8      C8    C  0  1  Y  N  N  56.982  73.527  18.181   2.101  -2.318   0.061  C8      TDI  13  
TDI  N7      N7    N  0  1  Y  N  N  55.700  73.593  17.722   3.364  -2.040  -0.372  N7      TDI  14  
TDI  N6      N6    N  0  1  N  N  N  52.669  74.119  17.707   5.894  -0.403  -1.003  N6      TDI  15  
TDI  N1      N1    N  0  1  Y  N  N  52.999  74.877  19.974   4.662   1.405  -0.120  N1      TDI  16  
TDI  N3      N3    N  0  1  Y  N  N  55.108  74.866  20.980   2.506   1.184   0.678  N3      TDI  17  
TDI  "C2'"   C2*   C  0  1  N  N  N  57.858  73.667  22.639  -0.507   0.926   0.021  "C2'"   TDI  18  
TDI  "C3'"   C3*   C  0  1  N  N  R  57.862  72.329  23.412  -1.860   1.512  -0.460  "C3'"   TDI  19  
TDI  "O3'"   O3*   O  0  1  N  N  N  59.161  72.345  24.048  -1.988   2.880  -0.065  "O3'"   TDI  20  
TDI  H2      H2    H  0  1  N  N  N  53.352  75.531  21.958   3.549   2.966   0.662  H2      TDI  21  
TDI  HS51    1HS5  H  0  0  N  N  N  57.664  68.092  23.405  -6.131  -1.375  -1.892  HS51    TDI  22  
TDI  HS52    2HS5  H  0  0  N  N  N  55.821  67.712  23.886  -7.416  -1.405  -0.661  HS52    TDI  23  
TDI  HS53    3HS5  H  0  0  N  N  N  56.737  67.850  22.178  -6.916   0.141  -1.387  HS53    TDI  24  
TDI  "H5'1"  1H5*  H  0  0  N  N  N  56.256  71.337  22.028  -3.730  -0.258  -1.512  "H5'1"  TDI  25  
TDI  "H5'2"  2H5*  H  0  0  N  N  N  57.053  69.749  21.751  -4.515   1.258  -1.007  "H5'2"  TDI  26  
TDI  "H4'"   H4*   H  0  1  N  N  N  59.121  70.569  22.379  -3.245   1.118   1.175  "H4'"   TDI  27  
TDI  "H1'1"  1H1*  H  0  0  N  N  N  57.794  71.977  20.277  -2.113  -0.803   1.699  "H1'1"  TDI  28  
TDI  "H1'2"  2H1*  H  0  0  N  N  N  59.407  71.609  20.464  -2.639  -1.524   0.151  "H1'2"  TDI  29  
TDI  H101    1H10  H  0  0  N  N  N  59.065  73.940  19.590   0.150  -0.417   1.971  H101    TDI  30  
TDI  H102    2H10  H  0  0  N  N  N  58.237  75.139  20.619  -0.219  -2.067   1.412  H102    TDI  31  
TDI  H8      H8    H  0  1  N  N  N  57.852  73.166  17.607   1.634  -3.292   0.029  H8      TDI  32  
TDI  HN7     HN7   H  0  1  N  N  N  55.402  73.313  16.788   3.977  -2.686  -0.756  HN7     TDI  33  
TDI  HN61    1HN6  H  0  0  N  N  N  52.787  73.146  17.424   5.941  -1.345  -1.230  HN61    TDI  34  
TDI  HN62    2HN6  H  0  0  N  N  N  51.671  74.319  17.776   6.654   0.175  -1.173  HN62    TDI  35  
TDI  "H2'1"  1H2*  H  0  0  N  N  N  56.849  73.996  22.298  -0.250   1.315   1.006  "H2'1"  TDI  36  
TDI  "H2'2"  2H2*  H  0  0  N  N  N  58.069  74.562  23.270   0.284   1.143  -0.697  "H2'2"  TDI  37  
TDI  "H3'"   H3*   H  0  1  N  N  N  56.938  72.172  24.016  -1.960   1.414  -1.541  "H3'"   TDI  38  
TDI  H1      H1    H  0  1  N  N  N  58.924  72.993  24.701  -1.267   3.362  -0.491  H1      TDI  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TDI  C2     N1      DOUB  Y  N   1  
TDI  C2     N3      SING  Y  N   2  
TDI  C2     H2      SING  N  N   3  
TDI  C4     C5      SING  Y  N   4  
TDI  C4     C9      SING  Y  N   5  
TDI  C4     N3      DOUB  Y  N   6  
TDI  C5     C6      DOUB  Y  N   7  
TDI  C5     N7      SING  Y  N   8  
TDI  C6     N6      SING  N  N   9  
TDI  C6     N1      SING  Y  N  10  
TDI  CS5    S       SING  N  N  11  
TDI  CS5    HS51    SING  N  N  12  
TDI  CS5    HS52    SING  N  N  13  
TDI  CS5    HS53    SING  N  N  14  
TDI  S      "C5'"   SING  N  N  15  
TDI  "C5'"  "C4'"   SING  N  N  16  
TDI  "C5'"  "H5'1"  SING  N  N  17  
TDI  "C5'"  "H5'2"  SING  N  N  18  
TDI  "C4'"  "C1'"   SING  N  N  19  
TDI  "C4'"  "C3'"   SING  N  N  20  
TDI  "C4'"  "H4'"   SING  N  N  21  
TDI  "C1'"  "N1'"   SING  N  N  22  
TDI  "C1'"  "H1'1"  SING  N  N  23  
TDI  "C1'"  "H1'2"  SING  N  N  24  
TDI  "N1'"  C10     SING  N  N  25  
TDI  "N1'"  "C2'"   SING  N  N  26  
TDI  C10    C9      SING  N  N  27  
TDI  C10    H101    SING  N  N  28  
TDI  C10    H102    SING  N  N  29  
TDI  C9     C8      DOUB  Y  N  30  
TDI  C8     N7      SING  Y  N  31  
TDI  C8     H8      SING  N  N  32  
TDI  N7     HN7     SING  N  N  33  
TDI  N6     HN61    SING  N  N  34  
TDI  N6     HN62    SING  N  N  35  
TDI  "C2'"  "C3'"   SING  N  N  36  
TDI  "C2'"  "H2'1"  SING  N  N  37  
TDI  "C2'"  "H2'2"  SING  N  N  38  
TDI  "C3'"  "O3'"   SING  N  N  39  
TDI  "C3'"  "H3'"   SING  N  N  40  
TDI  "O3'"  H1      SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TDI  SMILES            ACDLabs               10.04  "S(C)CC3CN(Cc2cnc1c2ncnc1N)CC3O"  
TDI  SMILES_CANONICAL  CACTVS                3.341  "CSC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c(N)ncnc23"  
TDI  SMILES            CACTVS                3.341  "CSC[CH]1CN(C[CH]1O)Cc2c[nH]c3c(N)ncnc23"  
TDI  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CSC[C@H]1C[N@](C[C@@H]1O)Cc2c[nH]c3c2ncnc3N"  
TDI  SMILES            "OpenEye OEToolkits"  1.5.0  "CSCC1CN(CC1O)Cc2c[nH]c3c2ncnc3N"  
TDI  InChI             InChI                 1.03   "InChI=1S/C13H19N5OS/c1-20-6-9-4-18(5-10(9)19)3-8-2-15-12-11(8)16-7-17-13(12)14/h2,7,9-10,15,19H,3-6H2,1H3,(H2,14,16,17)/t9-,10+/m1/s1"  
TDI  InChIKey          InChI                 1.03   NTHMDFGHOCNNOE-ZJUUUORDSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TDI  "SYSTEMATIC NAME"  ACDLabs               10.04  "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(methylsulfanyl)methyl]pyrrolidin-3-ol"  
TDI  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(1S,3R,4S)-1-[(4-amino-5H-pyrrolo[4,5-d]pyrimidin-7-yl)methyl]-4-(methylsulfanylmethyl)pyrrolidin-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TDI  "Create component"   2004-12-13  PDBJ  
TDI  "Modify descriptor"  2011-06-04  RCSB  
TDI  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     TDI
_pdbx_chem_comp_synonyms.name        "(3R,4S)-1-[9-DEAZAADENIN-9-YL)METHYL]-3-HYDROXY-4-(METHYLTHIOMETHYL)PYRROLIDINE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
