data_URI
# 
_chem_comp.id                                    URI 
_chem_comp.name                                  URIDINE 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H12 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2001-03-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        244.201 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     URI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1I5L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
URI N1     N1   N 0 1 N N N 13.859 6.258 12.518 -0.241 0.429  -1.029 N1     URI 1  
URI C2     C2   C 0 1 N N N 14.153 5.779 11.254 0.482  -0.634 -1.422 C2     URI 2  
URI N3     N3   N 0 1 N N N 13.320 6.227 10.257 0.743  -0.850 -2.725 N3     URI 3  
URI C4     C4   C 0 1 N N N 12.238 7.073 10.394 0.289  0.007  -3.661 C4     URI 4  
URI C5     C5   C 0 1 N N N 11.977 7.497 11.738 -0.468 1.134  -3.260 C5     URI 5  
URI C6     C6   C 0 1 N N N 12.771 7.080 12.731 -0.720 1.324  -1.947 C6     URI 6  
URI O2     O2   O 0 1 N N N 15.078 5.010 11.037 0.898  -1.416 -0.590 O2     URI 7  
URI O4     O4   O 0 1 N N N 11.593 7.395 9.395  0.529  -0.184 -4.839 O4     URI 8  
URI "C1'"  C1*  C 0 1 N N R 14.779 5.894 13.607 -0.513 0.636  0.394  "C1'"  URI 9  
URI "C2'"  C2*  C 0 1 N N R 14.648 6.799 14.833 -1.204 -0.608 1.007  "C2'"  URI 10 
URI "C3'"  C3*  C 0 1 N N S 14.868 5.842 16.003 -0.831 -0.481 2.508  "C3'"  URI 11 
URI "C4'"  C4*  C 0 1 N N R 14.500 4.472 15.446 0.409  0.431  2.508  "C4'"  URI 12 
URI "O2'"  O2*  O 0 1 N N N 15.597 7.844 14.783 -2.620 -0.546 0.828  "O2'"  URI 13 
URI "O3'"  O3*  O 0 1 N N N 16.275 5.893 16.189 -1.901 0.117  3.240  "O3'"  URI 14 
URI "O4'"  O4*  O 0 1 N N N 14.513 4.571 14.003 0.719  0.737  1.138  "O4'"  URI 15 
URI "C5'"  C5*  C 0 1 N N N 13.181 3.891 15.891 1.589  -0.293 3.159  "C5'"  URI 16 
URI "O5'"  O5*  O 0 1 N N N 13.240 3.291 17.191 2.736  0.558  3.148  "O5'"  URI 17 
URI H3     H3   H 0 1 N N N 13.526 5.896 9.314  1.263  -1.624 -2.991 H3     URI 18 
URI H5     H5   H 0 1 N N N 11.142 8.162 12.015 -0.841 1.832  -3.995 H5     URI 19 
URI H6     H6   H 0 1 N N N 12.522 7.422 13.749 -1.296 2.178  -1.623 H6     URI 20 
URI "H1'"  H1*  H 0 1 N N N 15.815 6.011 13.212 -1.125 1.526  0.542  "H1'"  URI 21 
URI "H2'"  H2*  H 0 1 N N N 13.665 7.320 14.910 -0.799 -1.527 0.581  "H2'"  URI 22 
URI "H3'"  H3*  H 0 1 N N N 14.302 6.063 16.938 -0.585 -1.458 2.924  "H3'"  URI 23 
URI "H4'"  H4*  H 0 1 N N N 15.258 3.764 15.855 0.193  1.350  3.053  "H4'"  URI 24 
URI "HO2'" *HO2 H 0 0 N N N 15.515 8.406 15.544 -2.988 -1.345 1.229  "HO2'" URI 25 
URI "HO3'" *HO3 H 0 0 N N N 16.411 5.297 16.916 -1.614 0.170  4.162  "HO3'" URI 26 
URI "H5'1" 1H5* H 0 0 N N N 12.373 4.658 15.843 1.808  -1.204 2.602  "H5'1" URI 27 
URI "H5'2" 2H5* H 0 0 N N N 12.791 3.167 15.137 1.336  -0.548 4.188  "H5'2" URI 28 
URI "HO5'" *HO5 H 0 0 N N N 12.409 2.925 17.471 3.455  0.064  3.567  "HO5'" URI 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
URI N1    C2     SING N N 1  
URI N1    C6     SING N N 2  
URI N1    "C1'"  SING N N 3  
URI C2    N3     SING N N 4  
URI C2    O2     DOUB N N 5  
URI N3    C4     SING N N 6  
URI N3    H3     SING N N 7  
URI C4    C5     SING N N 8  
URI C4    O4     DOUB N N 9  
URI C5    C6     DOUB N N 10 
URI C5    H5     SING N N 11 
URI C6    H6     SING N N 12 
URI "C1'" "C2'"  SING N N 13 
URI "C1'" "O4'"  SING N N 14 
URI "C1'" "H1'"  SING N N 15 
URI "C2'" "C3'"  SING N N 16 
URI "C2'" "O2'"  SING N N 17 
URI "C2'" "H2'"  SING N N 18 
URI "C3'" "C4'"  SING N N 19 
URI "C3'" "O3'"  SING N N 20 
URI "C3'" "H3'"  SING N N 21 
URI "C4'" "O4'"  SING N N 22 
URI "C4'" "C5'"  SING N N 23 
URI "C4'" "H4'"  SING N N 24 
URI "O2'" "HO2'" SING N N 25 
URI "O3'" "HO3'" SING N N 26 
URI "C5'" "O5'"  SING N N 27 
URI "C5'" "H5'1" SING N N 28 
URI "C5'" "H5'2" SING N N 29 
URI "O5'" "HO5'" SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
URI SMILES           ACDLabs              10.04 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)CO"                                                                                            
URI SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O"                                                                             
URI SMILES           CACTVS               3.341 "OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O"                                                                                  
URI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O"                                                                        
URI SMILES           "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)O"                                                                                          
URI InChI            InChI                1.03  "InChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1" 
URI InChIKey         InChI                1.03  DRTQHJPVMGBUCF-XVFCMESISA-N                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
URI "SYSTEMATIC NAME" ACDLabs              10.04 uridine                                                                            
URI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
URI "Create component"  2001-03-08 RCSB 
URI "Modify descriptor" 2011-06-04 RCSB 
# 
