data_XII
# 
_chem_comp.id                                    XII 
_chem_comp.name                                  "(3R)-3,5,5-trihydroxy-3-methylpentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H12 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-06 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        164.156 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XII 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8SZ6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XII C02 C1  C 0 1 N N R N N N 96.941  131.925 132.205 -0.053 0.090  -0.042 C02 XII 1  
XII C03 C2  C 0 1 N N N N N N 97.585  132.761 133.398 -0.120 -0.177 -1.547 C03 XII 2  
XII C04 C3  C 0 1 N N N N N N 97.884  132.092 131.043 -1.273 0.908  0.386  C04 XII 3  
XII C05 C4  C 0 1 N N N N N N 99.300  131.491 131.349 -2.530 0.139  0.068  C05 XII 4  
XII C08 C5  C 0 1 N N N N N N 95.652  132.357 131.563 1.223  0.871  0.281  C08 XII 5  
XII C09 C6  C 0 1 N N N N N N 94.430  132.383 132.486 2.436  0.110  -0.259 C09 XII 6  
XII O01 O1  O 0 1 N N N N N N 96.813  130.495 132.639 -0.042 -1.153 0.663  O01 XII 7  
XII O02 O2  O 0 1 N N N N N N 93.237  132.339 131.749 3.615  0.893  -0.062 O02 XII 8  
XII O06 O3  O 0 1 N N N N N N 99.432  130.559 132.184 -3.730 0.666  0.358  O06 XII 9  
XII O07 O4  O 0 1 N N N N N N 100.189 131.962 130.783 -2.457 -0.951 -0.447 O07 XII 10 
XII O10 O5  O 0 1 N N N N N N 94.431  131.227 133.294 2.567  -1.132 0.435  O10 XII 11 
XII H1  H1  H 0 1 N N N N N N 96.944  132.684 134.288 -1.029 -0.734 -1.776 H1  XII 12 
XII H2  H2  H 0 1 N N N N N N 98.583  132.360 133.629 -0.129 0.771  -2.084 H2  XII 13 
XII H3  H3  H 0 1 N N N N N N 97.673  133.816 133.100 0.749  -0.760 -1.852 H3  XII 14 
XII H4  H4  H 0 1 N N N N N N 97.992  133.165 130.824 -1.225 1.099  1.458  H4  XII 15 
XII H5  H5  H 0 1 N N N N N N 97.462  131.580 130.166 -1.281 1.856  -0.152 H5  XII 16 
XII H6  H6  H 0 1 N N N N N N 95.796  133.372 131.163 1.174  1.855  -0.185 H6  XII 17 
XII H7  H7  H 0 1 N N N N N N 95.437  131.664 130.736 1.316  0.984  1.361  H7  XII 18 
XII H8  H8  H 0 1 N N N N N N 96.211  130.439 133.371 0.000  -1.060 1.625  H8  XII 19 
XII H9  H9  H 0 1 N N N N N N 92.496  132.356 132.343 4.425  0.472  -0.381 H9  XII 20 
XII H10 H10 H 0 1 N N N N N N 100.350 130.327 132.258 -4.507 0.135  0.136  H10 XII 21 
XII H11 H11 H 0 1 N N N N N N 93.674  131.240 133.868 2.691  -1.038 1.390  H11 XII 22 
XII H12 H12 H 0 1 N N N N N N 94.471  133.290 133.107 2.301  -0.081 -1.324 H12 XII 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XII O07 C05 DOUB N N 1  
XII C04 C05 SING N N 2  
XII C04 C02 SING N N 3  
XII C05 O06 SING N N 4  
XII C08 C02 SING N N 5  
XII C08 C09 SING N N 6  
XII O02 C09 SING N N 7  
XII C02 O01 SING N N 8  
XII C02 C03 SING N N 9  
XII C09 O10 SING N N 10 
XII C03 H1  SING N N 11 
XII C03 H2  SING N N 12 
XII C03 H3  SING N N 13 
XII C04 H4  SING N N 14 
XII C04 H5  SING N N 15 
XII C08 H6  SING N N 16 
XII C08 H7  SING N N 17 
XII O01 H8  SING N N 18 
XII O02 H9  SING N N 19 
XII O06 H10 SING N N 20 
XII O10 H11 SING N N 21 
XII C09 H12 SING N N 22 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XII SMILES           ACDLabs              12.01 "OC(=O)CC(O)(C)CC(O)O"                                                              
XII InChI            InChI                1.06  "InChI=1S/C6H12O5/c1-6(11,2-4(7)8)3-5(9)10/h4,7-8,11H,2-3H2,1H3,(H,9,10)/t6-/m1/s1" 
XII InChIKey         InChI                1.06  LENSSSSJMZWHIU-ZCFIWIBFSA-N                                                         
XII SMILES_CANONICAL CACTVS               3.385 "C[C@@](O)(CC(O)O)CC(O)=O"                                                          
XII SMILES           CACTVS               3.385 "C[C](O)(CC(O)O)CC(O)=O"                                                            
XII SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@](CC(O)O)(CC(=O)O)O"                                                          
XII SMILES           "OpenEye OEToolkits" 2.0.7 "CC(CC(O)O)(CC(=O)O)O"                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XII "SYSTEMATIC NAME" ACDLabs              12.01 "(3R)-3,5,5-trihydroxy-3-methylpentanoic acid"        
XII "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-3-methyl-3,5,5-tris(oxidanyl)pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XII "Create component" 2023-06-06 RCSB 
XII "Initial release"  2024-03-20 RCSB 
# 
