data_XRI
# 
_chem_comp.id                                    XRI 
_chem_comp.name                                  "5-tert-butyl-2-methyl-4-({5-[(5S)-2-oxa-7-azaspiro[4.4]nonane-7-carbonyl]-1H-pyrazol-3-yl}methoxy)benzonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H30 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-08 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.520 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XRI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G3E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XRI C10 C1  C 0 1 N N N N N N -12.092 8.066  43.155 -3.862 -2.154 -0.121 C10 XRI 1  
XRI C11 C2  C 0 1 N N N N N N -11.243 8.421  41.917 -4.999 -3.175 -0.210 C11 XRI 2  
XRI C13 C3  C 0 1 N N N N N N -11.633 8.986  44.316 -2.961 -2.286 -1.349 C13 XRI 3  
XRI O14 O1  O 0 1 N N N N N N -13.213 7.015  45.539 -2.250 0.155  0.049  O14 XRI 4  
XRI C15 C4  C 0 1 N N N N N N -13.777 6.549  46.773 -1.439 1.328  0.135  C15 XRI 5  
XRI C16 C5  C 0 1 Y N N N N N -14.072 7.717  47.655 0.015  0.933  0.162  C16 XRI 6  
XRI C17 C6  C 0 1 Y N N N N N -13.254 8.706  48.226 0.514  -0.371 0.112  C17 XRI 7  
XRI C18 C7  C 0 1 Y N N N N N -14.124 9.516  48.931 1.891  -0.238 0.162  C18 XRI 8  
XRI C21 C8  C 0 1 N N N N N N -14.036 10.705 49.802 2.884  -1.324 0.139  C21 XRI 9  
XRI C24 C9  C 0 1 N N N N N N -11.505 10.898 49.631 5.293  -2.015 -0.049 C24 XRI 10 
XRI C25 C10 C 0 1 N N N N N N -10.571 11.904 50.300 6.541  -1.311 0.547  C25 XRI 11 
XRI C26 C11 C 0 1 N N S N N N -11.323 12.288 51.564 6.304  0.146  0.116  C26 XRI 12 
XRI C27 C12 C 0 1 N N N N N N -11.119 11.195 52.676 7.020  1.131  1.045  C27 XRI 13 
XRI C28 C13 C 0 1 N N N N N N -10.739 11.976 53.927 7.969  1.901  0.095  C28 XRI 14 
XRI C1  C14 C 0 1 N N N N N N -11.889 2.404  44.580 -6.056 3.204  0.080  C1  XRI 15 
XRI C2  C15 C 0 1 Y N N N N N -11.921 3.854  44.208 -5.485 1.810  0.028  C2  XRI 16 
XRI C3  C16 C 0 1 Y N N N N N -12.555 4.750  45.056 -4.122 1.621  0.063  C3  XRI 17 
XRI C4  C17 C 0 1 Y N N N N N -12.562 6.095  44.755 -3.595 0.336  0.015  C4  XRI 18 
XRI C5  C18 C 0 1 Y N N N N N -12.002 6.582  43.574 -4.440 -0.763 -0.069 C5  XRI 19 
XRI C6  C19 C 0 1 Y N N N N N -11.371 5.656  42.746 -5.805 -0.583 -0.105 C6  XRI 20 
XRI C7  C20 C 0 1 Y N N N N N -11.298 4.313  43.041 -6.340 0.707  -0.051 C7  XRI 21 
XRI C8  C21 C 0 1 N N N N N N -10.633 3.411  42.134 -7.759 0.898  -0.082 C8  XRI 22 
XRI N9  N1  N 0 1 N N N N N N -10.128 2.651  41.443 -8.884 1.049  -0.107 N9  XRI 23 
XRI C12 C22 C 0 1 N N N N N N -13.559 8.374  42.787 -3.042 -2.413 1.145  C12 XRI 24 
XRI N19 N2  N 0 1 Y N N N N N -15.360 8.994  48.780 2.144  1.102  0.239  N19 XRI 25 
XRI N20 N3  N 0 1 Y N N N N N -15.377 7.909  48.005 1.035  1.751  0.231  N20 XRI 26 
XRI O22 O2  O 0 1 N N N N N N -15.103 11.082 50.257 2.518  -2.484 0.164  O22 XRI 27 
XRI N23 N4  N 0 1 N N N N N N -12.849 11.284 50.096 4.199  -1.033 0.088  N23 XRI 28 
XRI O29 O3  O 0 1 N N N N N N -11.000 13.333 53.672 7.367  1.775  -1.213 O29 XRI 29 
XRI C30 C23 C 0 1 N N N N N N -10.751 13.546 52.287 6.870  0.417  -1.281 C30 XRI 30 
XRI C31 C24 C 0 1 N N N N N N -12.741 12.442 50.993 4.785  0.317  0.161  C31 XRI 31 
XRI H37 H1  H 0 1 N N N N N N -11.361 9.490  41.685 -5.641 -3.081 0.665  H37 XRI 32 
XRI H38 H2  H 0 1 N N N N N N -10.184 8.206  42.125 -5.583 -2.990 -1.111 H38 XRI 33 
XRI H39 H3  H 0 1 N N N N N N -11.578 7.820  41.058 -4.581 -4.181 -0.247 H39 XRI 34 
XRI H44 H4  H 0 1 N N N N N N -11.703 10.038 44.001 -3.545 -2.102 -2.251 H44 XRI 35 
XRI H45 H5  H 0 1 N N N N N N -12.279 8.822  45.191 -2.151 -1.559 -1.286 H45 XRI 36 
XRI H43 H6  H 0 1 N N N N N N -10.591 8.751  44.580 -2.543 -3.293 -1.387 H43 XRI 37 
XRI H47 H7  H 0 1 N N N N N N -14.708 6.000  46.567 -1.626 1.964  -0.730 H47 XRI 38 
XRI H46 H8  H 0 1 N N N N N N -13.061 5.882  47.275 -1.684 1.873  1.047  H46 XRI 39 
XRI H17 H9  H 0 1 N N N N N N -12.183 8.810  48.134 -0.053 -1.287 0.048  H17 XRI 40 
XRI H50 H10 H 0 1 N N N N N N -11.263 9.872  49.946 5.458  -2.254 -1.099 H50 XRI 41 
XRI H51 H11 H 0 1 N N N N N N -11.436 10.971 48.536 5.064  -2.920 0.514  H51 XRI 42 
XRI H52 H12 H 0 1 N N N N N N -9.602  11.443 50.542 6.558  -1.399 1.633  H52 XRI 43 
XRI H53 H13 H 0 1 N N N N N N -10.409 12.781 49.656 7.458  -1.704 0.109  H53 XRI 44 
XRI H54 H14 H 0 1 N N N N N N -12.049 10.631 52.839 6.305  1.811  1.507  H54 XRI 45 
XRI H55 H15 H 0 1 N N N N N N -10.314 10.501 52.393 7.589  0.596  1.805  H55 XRI 46 
XRI H56 H16 H 0 1 N N N N N N -11.340 11.632 54.782 8.028  2.950  0.386  H56 XRI 47 
XRI H57 H17 H 0 1 N N N N N N -9.671  11.834 54.149 8.961  1.449  0.101  H57 XRI 48 
XRI H34 H18 H 0 1 N N N N N N -12.766 1.896  44.153 -6.160 3.592  -0.933 H34 XRI 49 
XRI H33 H19 H 0 1 N N N N N N -10.971 1.944  44.185 -7.034 3.178  0.561  H33 XRI 50 
XRI H32 H20 H 0 1 N N N N N N -11.906 2.306  45.676 -5.387 3.849  0.650  H32 XRI 51 
XRI H35 H21 H 0 1 N N N N N N -13.043 4.394  45.951 -3.461 2.473  0.128  H35 XRI 52 
XRI H36 H22 H 0 1 N N N N N N -10.918 6.008  41.831 -6.462 -1.439 -0.171 H36 XRI 53 
XRI H40 H23 H 0 1 N N N N N N -13.648 9.428  42.485 -2.625 -3.419 1.107  H40 XRI 54 
XRI H41 H24 H 0 1 N N N N N N -13.872 7.726  41.955 -2.233 -1.686 1.208  H41 XRI 55 
XRI H42 H25 H 0 1 N N N N N N -14.203 8.187  43.659 -3.685 -2.319 2.020  H42 XRI 56 
XRI H19 H26 H 0 1 N N N N N N -16.178 9.381  49.205 3.026  1.503  0.287  H19 XRI 57 
XRI H59 H27 H 0 1 N N N N N N -9.671  13.639 52.100 7.682  -0.275 -1.504 H59 XRI 58 
XRI H58 H28 H 0 1 N N N N N N -11.263 14.455 51.940 6.084  0.337  -2.032 H58 XRI 59 
XRI H61 H29 H 0 1 N N N N N N -12.846 13.386 50.438 4.492  0.800  1.093  H61 XRI 60 
XRI H60 H30 H 0 1 N N N N N N -13.498 12.399 51.790 4.451  0.914  -0.688 H60 XRI 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XRI C1  C2  SING N N 1  
XRI C2  C3  DOUB Y N 2  
XRI C2  C7  SING Y N 3  
XRI C3  C4  SING Y N 4  
XRI C4  C5  DOUB Y N 5  
XRI C4  O14 SING N N 6  
XRI C5  C6  SING Y N 7  
XRI C5  C10 SING N N 8  
XRI C6  C7  DOUB Y N 9  
XRI C7  C8  SING N N 10 
XRI C8  N9  TRIP N N 11 
XRI C10 C11 SING N N 12 
XRI C10 C12 SING N N 13 
XRI C10 C13 SING N N 14 
XRI O14 C15 SING N N 15 
XRI C15 C16 SING N N 16 
XRI C16 C17 SING Y N 17 
XRI C16 N20 DOUB Y N 18 
XRI C17 C18 DOUB Y N 19 
XRI C18 N19 SING Y N 20 
XRI C18 C21 SING N N 21 
XRI N19 N20 SING Y N 22 
XRI C21 O22 DOUB N N 23 
XRI C21 N23 SING N N 24 
XRI N23 C24 SING N N 25 
XRI N23 C31 SING N N 26 
XRI C24 C25 SING N N 27 
XRI C25 C26 SING N N 28 
XRI C26 C27 SING N N 29 
XRI C26 C30 SING N N 30 
XRI C26 C31 SING N N 31 
XRI C27 C28 SING N N 32 
XRI C28 O29 SING N N 33 
XRI O29 C30 SING N N 34 
XRI C11 H37 SING N N 35 
XRI C11 H38 SING N N 36 
XRI C11 H39 SING N N 37 
XRI C13 H44 SING N N 38 
XRI C13 H45 SING N N 39 
XRI C13 H43 SING N N 40 
XRI C15 H47 SING N N 41 
XRI C15 H46 SING N N 42 
XRI C17 H17 SING N N 43 
XRI C24 H50 SING N N 44 
XRI C24 H51 SING N N 45 
XRI C25 H52 SING N N 46 
XRI C25 H53 SING N N 47 
XRI C27 H54 SING N N 48 
XRI C27 H55 SING N N 49 
XRI C28 H56 SING N N 50 
XRI C28 H57 SING N N 51 
XRI C1  H34 SING N N 52 
XRI C1  H33 SING N N 53 
XRI C1  H32 SING N N 54 
XRI C3  H35 SING N N 55 
XRI C6  H36 SING N N 56 
XRI C12 H40 SING N N 57 
XRI C12 H41 SING N N 58 
XRI C12 H42 SING N N 59 
XRI N19 H19 SING N N 60 
XRI C30 H59 SING N N 61 
XRI C30 H58 SING N N 62 
XRI C31 H61 SING N N 63 
XRI C31 H60 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XRI SMILES           ACDLabs              12.01 "CC(C)(C)c1cc(C#N)c(C)cc1OCc1cc([NH]n1)C(=O)N1CCC2(CCOC2)C1"                                                                                                         
XRI InChI            InChI                1.06  "InChI=1S/C24H30N4O3/c1-16-9-21(19(23(2,3)4)10-17(16)12-25)31-13-18-11-20(27-26-18)22(29)28-7-5-24(14-28)6-8-30-15-24/h9-11H,5-8,13-15H2,1-4H3,(H,26,27)/t24-/m0/s1" 
XRI InChIKey         InChI                1.06  RYNYQPKWTQAPAX-DEOSSOPVSA-N                                                                                                                                          
XRI SMILES_CANONICAL CACTVS               3.385 "Cc1cc(OCc2cc([nH]n2)C(=O)N3CC[C@]4(CCOC4)C3)c(cc1C#N)C(C)(C)C"                                                                                                      
XRI SMILES           CACTVS               3.385 "Cc1cc(OCc2cc([nH]n2)C(=O)N3CC[C]4(CCOC4)C3)c(cc1C#N)C(C)(C)C"                                                                                                       
XRI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1C#N)C(C)(C)C)OCc2cc([nH]n2)C(=O)N3CC[C@@]4(C3)CCOC4"                                                                                                     
XRI SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1C#N)C(C)(C)C)OCc2cc([nH]n2)C(=O)N3CCC4(C3)CCOC4"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XRI "SYSTEMATIC NAME" ACDLabs              12.01 "5-tert-butyl-2-methyl-4-({5-[(5S)-2-oxa-7-azaspiro[4.4]nonane-7-carbonyl]-1H-pyrazol-3-yl}methoxy)benzonitrile"                    
XRI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-~{tert}-butyl-2-methyl-4-[[5-[[(5~{S})-2-oxa-7-azaspiro[4.4]nonan-7-yl]carbonyl]-1~{H}-pyrazol-3-yl]methoxy]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XRI "Create component" 2023-06-08 RCSB 
XRI "Initial release"  2024-12-18 RCSB 
# 
