data_YII
# 
_chem_comp.id                                    YII 
_chem_comp.name                                  "3-[(3-aminophenyl)methyl]-5-methyl-7-[methyl(oxidanyl)-$l^{3}-sulfanyl]pyridazino[4,5-b]indol-4-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H18 N4 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-06 
_chem_comp.pdbx_modified_date                    2023-05-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        366.437 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YII 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G2E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YII C2  C1  C 0 1 Y N N -0.079 0.196  -11.019 -0.359 -1.331 -0.199 C2  YII 1  
YII O1  O1  O 0 1 N N N 1.450  -5.389 -13.903 -6.151 1.309  -0.577 O1  YII 2  
YII C4  C2  C 0 1 Y N N 0.060  -2.327 -10.324 -2.760 -1.941 0.695  C4  YII 3  
YII C7  C3  C 0 1 N N N -1.126 -5.576 -13.575 -6.036 1.208  2.069  C7  YII 4  
YII C6  C4  C 0 1 Y N N 0.290  -3.817 -12.182 -4.390 -0.224 0.317  C6  YII 5  
YII S   S1  S 0 1 N N R 0.446  -5.507 -12.784 -6.048 0.354  0.469  S   YII 6  
YII C5  C5  C 0 1 Y N N 0.198  -3.614 -10.815 -4.051 -1.477 0.808  C5  YII 7  
YII C8  C6  C 0 1 Y N N 0.237  -2.764 -13.080 -3.442 0.574  -0.285 C8  YII 8  
YII C9  C7  C 0 1 Y N N 0.088  -1.476 -12.571 -2.132 0.122  -0.414 C9  YII 9  
YII N   N1  N 0 1 Y N N 0.023  -0.248 -13.242 -1.000 0.689  -0.962 N   YII 10 
YII C10 C8  C 0 1 N N N 0.031  -0.105 -14.695 -0.944 2.015  -1.581 C10 YII 11 
YII C1  C9  C 0 1 Y N N -0.067 0.762  -12.293 0.071  -0.169 -0.840 C1  YII 12 
YII C3  C10 C 0 1 Y N N 0.011  -1.240 -11.194 -1.789 -1.147 0.084  C3  YII 13 
YII C11 C11 C 0 1 N N N -0.124 1.101  -9.944  0.559  -2.374 0.046  C11 YII 14 
YII N1  N2  N 0 1 N N N -0.128 2.388  -10.049 1.804  -2.254 -0.323 N1  YII 15 
YII N2  N3  N 0 1 N N N -0.099 2.914  -11.302 2.263  -1.101 -0.967 N2  YII 16 
YII C   C12 C 0 1 N N N -0.096 2.191  -12.486 1.429  -0.074 -1.226 C   YII 17 
YII O   O2  O 0 1 N N N -0.120 2.777  -13.565 1.841  0.928  -1.788 O   YII 18 
YII C12 C13 C 0 1 N N N 0.026  4.377  -11.345 3.670  -1.007 -1.365 C12 YII 19 
YII C13 C14 C 0 1 Y N N 1.454  4.833  -11.524 4.470  -0.399 -0.242 C13 YII 20 
YII C18 C15 C 0 1 Y N N 2.322  4.914  -10.440 5.036  -1.213 0.722  C18 YII 21 
YII C17 C16 C 0 1 Y N N 3.659  5.207  -10.626 5.771  -0.659 1.754  C17 YII 22 
YII C16 C17 C 0 1 Y N N 4.160  5.428  -11.901 5.942  0.710  1.826  C16 YII 23 
YII C15 C18 C 0 1 Y N N 3.306  5.384  -12.998 5.375  1.530  0.859  C15 YII 24 
YII N3  N4  N 0 1 N N N 3.774  5.661  -14.258 5.550  2.914  0.924  N3  YII 25 
YII C14 C19 C 0 1 Y N N 1.958  5.089  -12.793 4.642  0.970  -0.180 C14 YII 26 
YII H   H2  H 0 1 N N N -0.010 -2.164 -9.259  -2.499 -2.916 1.079  H   YII 27 
YII H3  H3  H 0 1 N N N -0.991 -5.517 -14.665 -7.028 1.614  2.272  H3  YII 28 
YII H4  H4  H 0 1 N N N -1.625 -6.522 -13.318 -5.764 0.504  2.855  H4  YII 29 
YII H2  H5  H 0 1 N N N -1.744 -4.732 -13.236 -5.310 2.021  2.042  H2  YII 30 
YII H1  H6  H 0 1 N N N 0.234  -4.454 -10.137 -4.803 -2.090 1.281  H1  YII 31 
YII H5  H7  H 0 1 N N N 0.309  -2.936 -14.144 -3.718 1.547  -0.664 H5  YII 32 
YII H6  H8  H 0 1 N N N -0.029 0.961  -14.959 -0.697 2.760  -0.824 H6  YII 33 
YII H8  H9  H 0 1 N N N 0.961  -0.531 -15.100 -0.180 2.021  -2.359 H8  YII 34 
YII H7  H10 H 0 1 N N N -0.832 -0.637 -15.120 -1.912 2.252  -2.021 H7  YII 35 
YII H9  H11 H 0 1 N N N -0.158 0.685  -8.948  0.230  -3.275 0.542  H9  YII 36 
YII H11 H12 H 0 1 N N N -0.361 4.791  -10.402 4.052  -2.004 -1.585 H11 YII 37 
YII H10 H13 H 0 1 N N N -0.573 4.757  -12.186 3.755  -0.381 -2.253 H10 YII 38 
YII H17 H14 H 0 1 N N N 1.946  4.746  -9.442  4.905  -2.283 0.669  H17 YII 39 
YII H16 H15 H 0 1 N N N 4.319  5.264  -9.773  6.212  -1.297 2.506  H16 YII 40 
YII H15 H16 H 0 1 N N N 5.211  5.634  -12.041 6.516  1.142  2.632  H15 YII 41 
YII H14 H17 H 0 1 N N N 4.756  5.848  -14.216 5.160  3.485  0.244  H14 YII 42 
YII H13 H18 H 0 1 N N N 3.609  4.876  -14.855 6.062  3.304  1.650  H13 YII 43 
YII H12 H19 H 0 1 N N N 1.290  5.059  -13.641 4.199  1.605  -0.933 H12 YII 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YII C10 N   SING N N 1  
YII N3  C15 SING N N 2  
YII O1  S   DOUB N N 3  
YII C7  S   SING N N 4  
YII O   C   DOUB N N 5  
YII N   C9  SING Y N 6  
YII N   C1  SING Y N 7  
YII C8  C9  DOUB Y N 8  
YII C8  C6  SING Y N 9  
YII C15 C14 DOUB Y N 10 
YII C15 C16 SING Y N 11 
YII C14 C13 SING Y N 12 
YII S   C6  SING N N 13 
YII C9  C3  SING Y N 14 
YII C   C1  SING N N 15 
YII C   N2  SING N N 16 
YII C1  C2  DOUB Y N 17 
YII C6  C5  DOUB Y N 18 
YII C16 C17 DOUB Y N 19 
YII C13 C12 SING N N 20 
YII C13 C18 DOUB Y N 21 
YII C12 N2  SING N N 22 
YII N2  N1  SING N N 23 
YII C3  C2  SING Y N 24 
YII C3  C4  DOUB Y N 25 
YII C2  C11 SING N N 26 
YII C5  C4  SING Y N 27 
YII C17 C18 SING Y N 28 
YII N1  C11 DOUB N N 29 
YII C4  H   SING N N 30 
YII C7  H3  SING N N 31 
YII C7  H4  SING N N 32 
YII C7  H2  SING N N 33 
YII C5  H1  SING N N 34 
YII C8  H5  SING N N 35 
YII C10 H6  SING N N 36 
YII C10 H8  SING N N 37 
YII C10 H7  SING N N 38 
YII C11 H9  SING N N 39 
YII C12 H11 SING N N 40 
YII C12 H10 SING N N 41 
YII C18 H17 SING N N 42 
YII C17 H16 SING N N 43 
YII C16 H15 SING N N 44 
YII N3  H14 SING N N 45 
YII N3  H13 SING N N 46 
YII C14 H12 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YII SMILES           ACDLabs              12.01 "CS(=O)c1cc2c(cc1)c1C=NN(Cc3cccc(N)c3)C(=O)c1n2C"                                                                                        
YII InChI            InChI                1.06  "InChI=1S/C19H18N4O2S/c1-22-17-9-14(26(2)25)6-7-15(17)16-10-21-23(19(24)18(16)22)11-12-4-3-5-13(20)8-12/h3-10H,11,20H2,1-2H3/t26-/m1/s1" 
YII InChIKey         InChI                1.06  NJHOCORPIDXRKR-AREMUKBSSA-N                                                                                                              
YII SMILES_CANONICAL CACTVS               3.385 "Cn1c2cc(ccc2c3C=NN(Cc4cccc(N)c4)C(=O)c13)[S@@](C)=O"                                                                                    
YII SMILES           CACTVS               3.385 "Cn1c2cc(ccc2c3C=NN(Cc4cccc(N)c4)C(=O)c13)[S](C)=O"                                                                                      
YII SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c2cc(ccc2c3c1C(=O)N(N=C3)Cc4cccc(c4)N)S(=O)C"                                                                                        
YII SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1c2cc(ccc2c3c1C(=O)N(N=C3)Cc4cccc(c4)N)S(=O)C"                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YII "SYSTEMATIC NAME" ACDLabs              12.01 "3-[(3-aminophenyl)methyl]-7-[(R)-methanesulfinyl]-5-methyl-3,5-dihydro-4H-pyridazino[4,5-b]indol-4-one" 
YII "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(3-aminophenyl)methyl]-5-methyl-7-methylsulfinyl-pyridazino[4,5-b]indol-4-one"                       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YII "Create component" 2023-02-06 RCSB 
YII "Initial release"  2023-05-17 RCSB 
# 
